data_9IML
#
_model_server_result.job_id            Ns-9L4BDXzc-qu8ZeM3DDw 
_model_server_result.datetime_utc      '2025-07-04 10:37:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9iml 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":601}' 
#
_entry.id    9IML 
#
_exptl.entry_id    9IML 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.57 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.11 
_cell.angle_gamma         90 
_cell.entry_id            9IML 
_cell.length_a            101.57 
_cell.length_b            84.97 
_cell.length_c            106.99 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9IML 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,J,K 1 1 
C,D,I,L,M 2 1 
E,F,N,O 3 1 
G,H,P,Q 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H31 F N4 O' 
_chem_comp.formula_weight    458.57 
_chem_comp.id                XB7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[(4-fluorophenyl)methyl]-N-{1-[2-(4-methoxyphenyl)ethyl]piperidin-4-yl}-1H-benzimidazol-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 XB7 sing 376 n n 
O1 C2 XB7 sing 377 n n 
C3 C2 XB7 doub 378 n y 
C3 C4 XB7 sing 379 n y 
C2 C28 XB7 sing 380 n y 
C4 C5 XB7 doub 381 n y 
C28 C27 XB7 doub 382 n y 
C5 C27 XB7 sing 383 n y 
C5 C6 XB7 sing 384 n n 
C7 C6 XB7 sing 385 n n 
C7 N1 XB7 sing 386 n n 
C12 N1 XB7 sing 387 n n 
C12 C11 XB7 sing 388 n n 
N1 C8 XB7 sing 389 n n 
C11 C10 XB7 sing 390 n n 
C8 C9 XB7 sing 391 n n 
F1 C24 XB7 sing 392 n n 
C10 C9 XB7 sing 393 n n 
C10 N2 XB7 sing 394 n n 
C24 C23 XB7 doub 395 n y 
C24 C25 XB7 sing 396 n y 
C23 C22 XB7 sing 397 n y 
N3 C13 XB7 doub 398 n y 
N3 C14 XB7 sing 399 n y 
C25 C26 XB7 doub 400 n y 
N2 C13 XB7 sing 401 n n 
C13 N4 XB7 sing 402 n y 
C15 C14 XB7 doub 403 n y 
C15 C16 XB7 sing 404 n y 
C22 C21 XB7 doub 405 n y 
C14 C19 XB7 sing 406 n y 
C26 C21 XB7 sing 407 n y 
C21 C20 XB7 sing 408 n n 
C16 C17 XB7 doub 409 n y 
N4 C19 XB7 sing 410 n y 
N4 C20 XB7 sing 411 n n 
C19 C18 XB7 doub 412 n y 
C17 C18 XB7 sing 413 n y 
C1 H1 XB7 sing 414 n n 
C1 H2 XB7 sing 415 n n 
C1 H3 XB7 sing 416 n n 
C10 H4 XB7 sing 417 n n 
C11 H5 XB7 sing 418 n n 
C11 H6 XB7 sing 419 n n 
C12 H7 XB7 sing 420 n n 
C12 H8 XB7 sing 421 n n 
C15 H9 XB7 sing 422 n n 
C16 H10 XB7 sing 423 n n 
C17 H11 XB7 sing 424 n n 
C18 H12 XB7 sing 425 n n 
C20 H13 XB7 sing 426 n n 
C20 H14 XB7 sing 427 n n 
C22 H15 XB7 sing 428 n n 
C23 H16 XB7 sing 429 n n 
C25 H17 XB7 sing 430 n n 
C26 H18 XB7 sing 431 n n 
C27 H19 XB7 sing 432 n n 
C28 H20 XB7 sing 433 n n 
C3 H21 XB7 sing 434 n n 
C4 H22 XB7 sing 435 n n 
C6 H23 XB7 sing 436 n n 
C6 H24 XB7 sing 437 n n 
C7 H25 XB7 sing 438 n n 
C7 H26 XB7 sing 439 n n 
C8 H27 XB7 sing 440 n n 
C8 H28 XB7 sing 441 n n 
C9 H29 XB7 sing 442 n n 
C9 H30 XB7 sing 443 n n 
N2 H32 XB7 sing 444 n n 
#
_atom_sites.entry_id                     9IML 
_atom_sites.fract_transf_matrix[1][1]    0.009845 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000019 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011769 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 XB7 C 1 601 601 XB7 LIG . 
J 4 HOH A 1 601 47 HOH HOH . 
J 4 HOH A 2 602 23 HOH HOH . 
J 4 HOH A 3 603 15 HOH HOH . 
J 4 HOH A 4 604 21 HOH HOH . 
J 4 HOH A 5 605 2 HOH HOH . 
J 4 HOH A 6 606 18 HOH HOH . 
J 4 HOH A 7 607 83 HOH HOH . 
J 4 HOH A 8 608 84 HOH HOH . 
J 4 HOH A 9 609 65 HOH HOH . 
J 4 HOH A 10 610 64 HOH HOH . 
K 4 HOH B 1 101 75 HOH HOH . 
K 4 HOH B 2 102 82 HOH HOH . 
L 4 HOH C 1 701 16 HOH HOH . 
L 4 HOH C 2 702 41 HOH HOH . 
L 4 HOH C 3 703 40 HOH HOH . 
L 4 HOH C 4 704 34 HOH HOH . 
L 4 HOH C 5 705 66 HOH HOH . 
L 4 HOH C 6 706 51 HOH HOH . 
L 4 HOH C 7 707 19 HOH HOH . 
L 4 HOH C 8 708 10 HOH HOH . 
L 4 HOH C 9 709 35 HOH HOH . 
L 4 HOH C 10 710 42 HOH HOH . 
L 4 HOH C 11 711 13 HOH HOH . 
L 4 HOH C 12 712 8 HOH HOH . 
L 4 HOH C 13 713 74 HOH HOH . 
L 4 HOH C 14 714 73 HOH HOH . 
M 4 HOH D 1 101 70 HOH HOH . 
M 4 HOH D 2 102 68 HOH HOH . 
M 4 HOH D 3 103 71 HOH HOH . 
N 4 HOH E 1 601 22 HOH HOH . 
N 4 HOH E 2 602 24 HOH HOH . 
N 4 HOH E 3 603 67 HOH HOH . 
O 4 HOH F 1 101 1 HOH HOH . 
P 4 HOH G 1 601 20 HOH HOH . 
P 4 HOH G 2 602 79 HOH HOH . 
P 4 HOH G 3 603 77 HOH HOH . 
P 4 HOH G 4 604 78 HOH HOH . 
P 4 HOH G 5 605 72 HOH HOH . 
Q 4 HOH H 1 101 57 HOH HOH . 
Q 4 HOH H 2 102 62 HOH HOH . 
Q 4 HOH H 3 103 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 XB7 . . . I 3 -75.09 -25.569 15.133 1 63.33 ? C10 XB7 601 C 1 
HETATM 2 C C11 XB7 . . . I 3 -75.379 -24.408 14.228 1 72.45 ? C11 XB7 601 C 1 
HETATM 3 C C12 XB7 . . . I 3 -74.849 -24.695 12.839 1 75.95 ? C12 XB7 601 C 1 
HETATM 4 C C13 XB7 . . . I 3 -75.423 -24.775 17.597 1 66.28 ? C13 XB7 601 C 1 
HETATM 5 C C14 XB7 . . . I 3 -74.449 -23.783 19.238 1 61.64 ? C14 XB7 601 C 1 
HETATM 6 C C15 XB7 . . . I 3 -73.551 -23.205 20.116 1 62.02 ? C15 XB7 601 C 1 
HETATM 7 C C16 XB7 . . . I 3 -74.049 -22.635 21.263 1 59.28 ? C16 XB7 601 C 1 
HETATM 8 C C17 XB7 . . . I 3 -75.415 -22.636 21.546 1 60.63 ? C17 XB7 601 C 1 
HETATM 9 C C18 XB7 . . . I 3 -76.324 -23.205 20.684 1 57.95 ? C18 XB7 601 C 1 
HETATM 10 C C19 XB7 . . . I 3 -75.811 -23.777 19.535 1 63.25 ? C19 XB7 601 C 1 
HETATM 11 C C20 XB7 . . . I 3 -77.853 -24.672 18.313 1 63.89 ? C20 XB7 601 C 1 
HETATM 12 C C21 XB7 . . . I 3 -78.606 -23.551 17.643 1 64.3 ? C21 XB7 601 C 1 
HETATM 13 C C22 XB7 . . . I 3 -78.727 -22.32 18.25 1 58.71 ? C22 XB7 601 C 1 
HETATM 14 C C23 XB7 . . . I 3 -79.428 -21.289 17.65 1 55.66 ? C23 XB7 601 C 1 
HETATM 15 C C24 XB7 . . . I 3 -80.007 -21.526 16.442 1 64.79 ? C24 XB7 601 C 1 
HETATM 16 C C25 XB7 . . . I 3 -79.922 -22.727 15.805 1 60.87 ? C25 XB7 601 C 1 
HETATM 17 C C26 XB7 . . . I 3 -79.212 -23.744 16.42 1 60.63 ? C26 XB7 601 C 1 
HETATM 18 C C8 XB7 . . . I 3 -73.119 -26.131 13.751 1 71.84 ? C8 XB7 601 C 1 
HETATM 19 C C9 XB7 . . . I 3 -73.622 -25.884 15.158 1 55.06 ? C9 XB7 601 C 1 
HETATM 20 F F1 XB7 . . . I 3 -80.699 -20.519 15.846 1 63.49 ? F1 XB7 601 C 1 
HETATM 21 N N1 XB7 . . . I 3 -73.414 -24.994 12.872 1 73.65 ? N1 XB7 601 C 1 
HETATM 22 N N2 XB7 . . . I 3 -75.728 -25.47 16.443 1 67.84 ? N2 XB7 601 C 1 
HETATM 23 N N3 XB7 . . . I 3 -74.225 -24.421 18.019 1 64.47 ? N3 XB7 601 C 1 
HETATM 24 N N4 XB7 . . . I 3 -76.425 -24.417 18.469 1 64.85 ? N4 XB7 601 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           497 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           24 
#