data_9IN9 # _model_server_result.job_id plpyHJCYnmK5qHGWhTij8g _model_server_result.datetime_utc '2025-06-20 03:09:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9in9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9IN9 # _exptl.entry_id 9IN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9IN9 _cell.length_a 46.235 _cell.length_b 115.755 _cell.length_c 53.214 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C FME 1 A FME 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A NZ LYS 204 A LYS 204 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.483 ? covale ? covale4 A NZ LYS 204 A LYS 204 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 481 n n C1 C6 RET sing 482 n n C1 C16 RET sing 483 n n C1 C17 RET sing 484 n n C2 C3 RET sing 485 n n C2 H21 RET sing 486 n n C2 H22 RET sing 487 n n C3 C4 RET sing 488 n n C3 H31 RET sing 489 n n C3 H32 RET sing 490 n n C4 C5 RET sing 491 n n C4 H41 RET sing 492 n n C4 H42 RET sing 493 n n C5 C6 RET doub 494 n n C5 C18 RET sing 495 n n C6 C7 RET sing 496 n n C7 C8 RET doub 497 e n C7 H7 RET sing 498 n n C8 C9 RET sing 499 n n C8 H8 RET sing 500 n n C9 C10 RET doub 501 e n C9 C19 RET sing 502 n n C10 C11 RET sing 503 n n C10 H10 RET sing 504 n n C11 C12 RET doub 505 e n C11 H11 RET sing 506 n n C12 C13 RET sing 507 n n C12 H12 RET sing 508 n n C13 C14 RET doub 509 e n C13 C20 RET sing 510 n n C14 C15 RET sing 511 n n C14 H14 RET sing 512 n n C15 O1 RET doub 513 n n C15 H15 RET sing 514 n n C16 H161 RET sing 515 n n C16 H162 RET sing 516 n n C16 H163 RET sing 517 n n C17 H171 RET sing 518 n n C17 H172 RET sing 519 n n C17 H173 RET sing 520 n n C18 H181 RET sing 521 n n C18 H182 RET sing 522 n n C18 H183 RET sing 523 n n C19 H191 RET sing 524 n n C19 H192 RET sing 525 n n C19 H193 RET sing 526 n n C20 H201 RET sing 527 n n C20 H202 RET sing 528 n n C20 H203 RET sing 529 n n # _atom_sites.entry_id 9IN9 _atom_sites.fract_transf_matrix[1][1] 0.021629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 97N A 1 302 303 97N 97N . D 4 LFA A 1 303 401 LFA LFA . E 4 LFA A 1 304 402 LFA LFA . F 4 LFA A 1 305 403 LFA LFA . G 4 LFA A 1 306 404 LFA LFA . H 4 LFA A 1 307 405 LFA LFA . I 4 LFA A 1 308 406 LFA LFA . J 4 LFA A 1 309 407 LFA LFA . K 4 LFA A 1 310 408 LFA LFA . L 4 LFA A 1 311 409 LFA LFA . M 4 LFA A 1 312 410 LFA LFA . N 4 LFA A 1 313 411 LFA LFA . O 4 LFA A 1 314 412 LFA LFA . P 4 LFA A 1 315 413 LFA LFA . Q 4 LFA A 1 316 414 LFA LFA . R 4 LFA A 1 317 415 LFA LFA . S 4 LFA A 1 318 416 LFA LFA . T 5 OLC A 1 319 417 OLC OLA . U 5 OLC A 1 320 418 OLC OLA . V 5 OLC A 1 321 419 OLC OLC . W 5 OLC A 1 322 420 OLC OLC . X 4 LFA A 1 323 421 LFA LFA . Y 4 LFA A 1 324 422 LFA LFA . Z 4 LFA A 1 325 423 LFA LFA . AA 4 LFA A 1 326 424 LFA LFA . BA 6 HOH A 1 401 518 HOH HOH . BA 6 HOH A 2 402 522 HOH HOH . BA 6 HOH A 3 403 530 HOH HOH . BA 6 HOH A 4 404 544 HOH HOH . BA 6 HOH A 5 405 548 HOH HOH . BA 6 HOH A 6 406 573 HOH HOH . BA 6 HOH A 7 407 605 HOH HOH . BA 6 HOH A 8 408 505 HOH HOH . BA 6 HOH A 9 409 596 HOH HOH . BA 6 HOH A 10 410 574 HOH HOH . BA 6 HOH A 11 411 602 HOH HOH . BA 6 HOH A 12 412 553 HOH HOH . BA 6 HOH A 13 413 540 HOH HOH . BA 6 HOH A 14 414 504 HOH HOH . BA 6 HOH A 15 415 588 HOH HOH . BA 6 HOH A 16 416 512 HOH HOH . BA 6 HOH A 17 417 545 HOH HOH . BA 6 HOH A 18 418 523 HOH HOH . BA 6 HOH A 19 419 532 HOH HOH . BA 6 HOH A 20 420 526 HOH HOH . BA 6 HOH A 21 421 529 HOH HOH . BA 6 HOH A 22 422 536 HOH HOH . BA 6 HOH A 23 423 515 HOH HOH . BA 6 HOH A 24 424 579 HOH HOH . BA 6 HOH A 25 425 547 HOH HOH . BA 6 HOH A 26 426 577 HOH HOH . BA 6 HOH A 27 427 606 HOH HOH . BA 6 HOH A 28 428 513 HOH HOH . BA 6 HOH A 29 429 521 HOH HOH . BA 6 HOH A 30 430 550 HOH HOH . BA 6 HOH A 31 431 567 HOH HOH . BA 6 HOH A 32 432 561 HOH HOH . BA 6 HOH A 33 433 520 HOH HOH . BA 6 HOH A 34 434 570 HOH HOH . BA 6 HOH A 35 435 552 HOH HOH . BA 6 HOH A 36 436 527 HOH HOH . BA 6 HOH A 37 437 506 HOH HOH . BA 6 HOH A 38 438 594 HOH HOH . BA 6 HOH A 39 439 507 HOH HOH . BA 6 HOH A 40 440 514 HOH HOH . BA 6 HOH A 41 441 560 HOH HOH . BA 6 HOH A 42 442 580 HOH HOH . BA 6 HOH A 43 443 502 HOH HOH . BA 6 HOH A 44 444 534 HOH HOH . BA 6 HOH A 45 445 537 HOH HOH . BA 6 HOH A 46 446 556 HOH HOH . BA 6 HOH A 47 447 555 HOH HOH . BA 6 HOH A 48 448 525 HOH HOH . BA 6 HOH A 49 449 542 HOH HOH . BA 6 HOH A 50 450 510 HOH HOH . BA 6 HOH A 51 451 539 HOH HOH . BA 6 HOH A 52 452 564 HOH HOH . BA 6 HOH A 53 453 528 HOH HOH . BA 6 HOH A 54 454 503 HOH HOH . BA 6 HOH A 55 455 546 HOH HOH . BA 6 HOH A 56 456 563 HOH HOH . BA 6 HOH A 57 457 519 HOH HOH . BA 6 HOH A 58 458 609 HOH HOH . BA 6 HOH A 59 459 535 HOH HOH . BA 6 HOH A 60 460 589 HOH HOH . BA 6 HOH A 61 461 595 HOH HOH . BA 6 HOH A 62 462 543 HOH HOH . BA 6 HOH A 63 463 549 HOH HOH . BA 6 HOH A 64 464 516 HOH HOH . BA 6 HOH A 65 465 583 HOH HOH . BA 6 HOH A 66 466 610 HOH HOH . BA 6 HOH A 67 467 509 HOH HOH . BA 6 HOH A 68 468 599 HOH HOH . BA 6 HOH A 69 469 558 HOH HOH . BA 6 HOH A 70 470 593 HOH HOH . BA 6 HOH A 71 471 575 HOH HOH . BA 6 HOH A 72 472 541 HOH HOH . BA 6 HOH A 73 473 517 HOH HOH . BA 6 HOH A 74 474 601 HOH HOH . BA 6 HOH A 75 475 557 HOH HOH . BA 6 HOH A 76 476 586 HOH HOH . BA 6 HOH A 77 477 554 HOH HOH . BA 6 HOH A 78 478 538 HOH HOH . BA 6 HOH A 79 479 508 HOH HOH . BA 6 HOH A 80 480 578 HOH HOH . BA 6 HOH A 81 481 597 HOH HOH . BA 6 HOH A 82 482 608 HOH HOH . BA 6 HOH A 83 483 568 HOH HOH . BA 6 HOH A 84 484 600 HOH HOH . BA 6 HOH A 85 485 598 HOH HOH . BA 6 HOH A 86 486 524 HOH HOH . BA 6 HOH A 87 487 571 HOH HOH . BA 6 HOH A 88 488 566 HOH HOH . BA 6 HOH A 89 489 501 HOH HOH . BA 6 HOH A 90 490 565 HOH HOH . BA 6 HOH A 91 491 562 HOH HOH . BA 6 HOH A 92 492 511 HOH HOH . BA 6 HOH A 93 493 572 HOH HOH . BA 6 HOH A 94 494 584 HOH HOH . BA 6 HOH A 95 495 559 HOH HOH . BA 6 HOH A 96 496 592 HOH HOH . BA 6 HOH A 97 497 581 HOH HOH . BA 6 HOH A 98 498 551 HOH HOH . BA 6 HOH A 99 499 607 HOH HOH . BA 6 HOH A 100 500 569 HOH HOH . BA 6 HOH A 101 501 587 HOH HOH . BA 6 HOH A 102 502 582 HOH HOH . BA 6 HOH A 103 503 533 HOH HOH . BA 6 HOH A 104 504 611 HOH HOH . BA 6 HOH A 105 505 604 HOH HOH . BA 6 HOH A 106 506 531 HOH HOH . BA 6 HOH A 107 507 603 HOH HOH . BA 6 HOH A 108 508 576 HOH HOH . BA 6 HOH A 109 509 585 HOH HOH . BA 6 HOH A 110 510 591 HOH HOH . BA 6 HOH A 111 511 590 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . B 2 -10.017 10.545 -10.035 0.6 25.52 ? C1 RET 301 A 1 HETATM 2 C C1 RET . B . B 2 -9.967 10.57 -10.118 0.4 25.46 ? C1 RET 301 A 1 HETATM 3 C C2 RET . A . B 2 -10.625 9.585 -11.064 0.6 25.44 ? C2 RET 301 A 1 HETATM 4 C C2 RET . B . B 2 -10.652 9.823 -11.261 0.4 24.56 ? C2 RET 301 A 1 HETATM 5 C C3 RET . A . B 2 -12.074 9.925 -11.381 0.6 24.05 ? C3 RET 301 A 1 HETATM 6 C C3 RET . B . B 2 -11.583 8.725 -10.771 0.4 25.67 ? C3 RET 301 A 1 HETATM 7 C C4 RET . A . B 2 -12.933 9.86 -10.134 0.6 25.43 ? C4 RET 301 A 1 HETATM 8 C C4 RET . B . B 2 -12.646 9.268 -9.833 0.4 26.09 ? C4 RET 301 A 1 HETATM 9 C C5 RET . A . B 2 -12.275 10.455 -8.902 0.6 22.71 ? C5 RET 301 A 1 HETATM 10 C C5 RET . B . B 2 -12.134 10.29 -8.849 0.4 22.64 ? C5 RET 301 A 1 HETATM 11 C C6 RET . A . B 2 -10.95 10.686 -8.822 0.6 24.58 ? C6 RET 301 A 1 HETATM 12 C C6 RET . B . B 2 -10.985 10.965 -9.039 0.4 25.22 ? C6 RET 301 A 1 HETATM 13 C C7 RET . A . B 2 -10.407 11.346 -7.645 0.6 19.94 ? C7 RET 301 A 1 HETATM 14 C C7 RET . B . B 2 -10.554 11.945 -8.061 0.4 21.22 ? C7 RET 301 A 1 HETATM 15 C C8 RET . A . B 2 -9.388 12.216 -7.447 0.6 20.74 ? C8 RET 301 A 1 HETATM 16 C C8 RET . B . B 2 -9.438 11.982 -7.357 0.4 21.45 ? C8 RET 301 A 1 HETATM 17 C C9 RET . A . B 2 -9.025 12.781 -6.158 0.6 20.77 ? C9 RET 301 A 1 HETATM 18 C C9 RET . B . B 2 -9.113 12.968 -6.363 0.4 22.53 ? C9 RET 301 A 1 HETATM 19 C C10 RET . A . B 2 -7.84 13.443 -6.034 0.6 23.4 ? C10 RET 301 A 1 HETATM 20 C C10 RET . B . B 2 -7.943 13.646 -6.44 0.4 20.18 ? C10 RET 301 A 1 HETATM 21 C C11 RET . A . B 2 -7.307 14.104 -4.874 0.6 18.98 ? C11 RET 301 A 1 HETATM 22 C C11 RET . B . B 2 -7.471 14.644 -5.526 0.4 19.53 ? C11 RET 301 A 1 HETATM 23 C C12 RET . A . B 2 -6.349 15.047 -4.961 0.6 21.38 ? C12 RET 301 A 1 HETATM 24 C C12 RET . B . B 2 -6.231 15.135 -5.463 0.4 20.03 ? C12 RET 301 A 1 HETATM 25 C C13 RET . A . B 2 -5.75 15.809 -3.888 0.6 20.21 ? C13 RET 301 A 1 HETATM 26 C C13 RET . B . B 2 -5.779 16.135 -4.519 0.4 16.98 ? C13 RET 301 A 1 HETATM 27 C C14 RET . A . B 2 -4.54 16.379 -4.09 0.6 23.13 ? C14 RET 301 A 1 HETATM 28 C C14 RET . B . B 2 -4.575 16.718 -4.686 0.4 17.67 ? C14 RET 301 A 1 HETATM 29 C C15 RET . A . B 2 -3.78 17.182 -3.168 0.6 21.6 ? C15 RET 301 A 1 HETATM 30 C C15 RET . B . B 2 -3.961 17.705 -3.838 0.4 20.05 ? C15 RET 301 A 1 HETATM 31 C C16 RET . A . B 2 -9.8 11.901 -10.724 0.6 24.79 ? C16 RET 301 A 1 HETATM 32 C C16 RET . B . B 2 -9.275 11.803 -10.714 0.4 20.54 ? C16 RET 301 A 1 HETATM 33 C C17 RET . A . B 2 -8.655 9.975 -9.622 0.6 24.23 ? C17 RET 301 A 1 HETATM 34 C C17 RET . B . B 2 -8.904 9.631 -9.533 0.4 23.23 ? C17 RET 301 A 1 HETATM 35 C C18 RET . A . B 2 -13.267 10.869 -7.851 0.6 22.98 ? C18 RET 301 A 1 HETATM 36 C C18 RET . B . B 2 -12.885 10.26 -7.546 0.4 25.69 ? C18 RET 301 A 1 HETATM 37 C C19 RET . A . B 2 -10.02 12.642 -5.037 0.6 21.53 ? C19 RET 301 A 1 HETATM 38 C C19 RET . B . B 2 -10.118 13.207 -5.271 0.4 22.16 ? C19 RET 301 A 1 HETATM 39 C C20 RET . A . B 2 -6.549 15.998 -2.628 0.6 23.18 ? C20 RET 301 A 1 HETATM 40 C C20 RET . B . B 2 -6.692 16.481 -3.374 0.4 24.49 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #