data_9IO7 # _model_server_result.job_id S7BEBOiiuRugLUcv6Yg5hA _model_server_result.datetime_utc '2025-07-21 21:01:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9io7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9IO7 # _exptl.entry_id 9IO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 393.416 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.939 _cell.angle_gamma 90 _cell.entry_id 9IO7 _cell.length_a 35.884 _cell.length_b 50.18 _cell.length_c 60.586 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 45 1_555 A SG CYS 217 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? covale ? covale1 A OG SER 48 A SER 46 1_555 B CAG C8V . A C8V 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C13 H23 N5 O7 S' _chem_comp.formula_weight 393.416 _chem_comp.id C8V _chem_comp.mon_nstd_flag . _chem_comp.name "(2S,5R)-1-formyl-N'-[(3R)-piperidine-3-carbonyl]-5-[(sulfooxy)amino]piperidine-2-carbohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'OPEN FORM - Zidebactam' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAF SAZ C8V doub 70 n n OAE SAZ C8V doub 71 n n SAZ OAS C8V sing 72 n n SAZ OAD C8V sing 73 n n OAS NAR C8V sing 74 n n NAR CAV C8V sing 75 n n CB CAK C8V sing 76 n n CB CA C8V sing 77 n n CAK CAV C8V sing 78 n n OAA CAG C8V doub 79 n n CAV CAN C8V sing 80 n n CAG N C8V sing 81 n n CA N C8V sing 82 n n CA C C8V sing 83 n n N CAN C8V sing 84 n n NAQ C C8V sing 85 n n NAQ NAP C8V sing 86 n n C O C8V doub 87 n n CAH CAI C8V sing 88 n n CAH CAJ C8V sing 89 n n CAI NAO C8V sing 90 n n OAB CAT C8V doub 91 n n NAP CAT C8V sing 92 n n CAT CAW C8V sing 93 n n NAO CAM C8V sing 94 n n CAJ CAW C8V sing 95 n n CAW CAM C8V sing 96 n n NAR H1 C8V sing 97 n n CAV H2 C8V sing 98 n n CAK H3 C8V sing 99 n n CAK H4 C8V sing 100 n n CB H5 C8V sing 101 n n CB H6 C8V sing 102 n n CAN H7 C8V sing 103 n n CAN H8 C8V sing 104 n n CAG H9 C8V sing 105 n n CA H10 C8V sing 106 n n NAQ H11 C8V sing 107 n n NAP H12 C8V sing 108 n n CAW H13 C8V sing 109 n n CAJ H14 C8V sing 110 n n CAJ H15 C8V sing 111 n n CAH H16 C8V sing 112 n n CAH H17 C8V sing 113 n n CAI H18 C8V sing 114 n n CAI H19 C8V sing 115 n n NAO H20 C8V sing 116 n n CAM H22 C8V sing 117 n n CAM H23 C8V sing 118 n n OAD H24 C8V sing 119 n n # _atom_sites.entry_id 9IO7 _atom_sites.fract_transf_matrix[1][1] 0.027868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003886 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C8V A 1 301 301 C8V C8V . C 3 EDO A 1 302 302 EDO EDO . D 4 HOH A 1 401 3 HOH HOH . D 4 HOH A 2 402 32 HOH HOH . D 4 HOH A 3 403 24 HOH HOH . D 4 HOH A 4 404 34 HOH HOH . D 4 HOH A 5 405 18 HOH HOH . D 4 HOH A 6 406 25 HOH HOH . D 4 HOH A 7 407 36 HOH HOH . D 4 HOH A 8 408 6 HOH HOH . D 4 HOH A 9 409 26 HOH HOH . D 4 HOH A 10 410 38 HOH HOH . D 4 HOH A 11 411 17 HOH HOH . D 4 HOH A 12 412 35 HOH HOH . D 4 HOH A 13 413 15 HOH HOH . D 4 HOH A 14 414 21 HOH HOH . D 4 HOH A 15 415 30 HOH HOH . D 4 HOH A 16 416 4 HOH HOH . D 4 HOH A 17 417 14 HOH HOH . D 4 HOH A 18 418 5 HOH HOH . D 4 HOH A 19 419 20 HOH HOH . D 4 HOH A 20 420 16 HOH HOH . D 4 HOH A 21 421 28 HOH HOH . D 4 HOH A 22 422 39 HOH HOH . D 4 HOH A 23 423 29 HOH HOH . D 4 HOH A 24 424 12 HOH HOH . D 4 HOH A 25 425 8 HOH HOH . D 4 HOH A 26 426 13 HOH HOH . D 4 HOH A 27 427 9 HOH HOH . D 4 HOH A 28 428 27 HOH HOH . D 4 HOH A 29 429 10 HOH HOH . D 4 HOH A 30 430 1 HOH HOH . D 4 HOH A 31 431 11 HOH HOH . D 4 HOH A 32 432 22 HOH HOH . D 4 HOH A 33 433 33 HOH HOH . D 4 HOH A 34 434 31 HOH HOH . D 4 HOH A 35 435 37 HOH HOH . D 4 HOH A 36 436 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAF C8V . . . B 2 9.243 -2.815 23.807 1 26.64 ? OAF C8V 301 A 1 HETATM 2 S SAZ C8V . . . B 2 10.304 -3.238 22.895 1 26.18 ? SAZ C8V 301 A 1 HETATM 3 O OAD C8V . . . B 2 9.935 -3.188 21.46 1 25.8 ? OAD C8V 301 A 1 HETATM 4 O OAE C8V . . . B 2 11.574 -2.563 23.16 1 27.3 ? OAE C8V 301 A 1 HETATM 5 O OAS C8V . . . B 2 10.599 -4.762 23.142 1 25.65 ? OAS C8V 301 A 1 HETATM 6 N NAR C8V . . . B 2 9.46 -5.65 23.083 1 24.56 ? NAR C8V 301 A 1 HETATM 7 C CAV C8V . . . B 2 10.04 -6.887 23.668 1 23.65 ? CAV C8V 301 A 1 HETATM 8 C CAK C8V . . . B 2 10.812 -6.455 24.925 1 23.6 ? CAK C8V 301 A 1 HETATM 9 C CB C8V . . . B 2 12.226 -7.02 25.079 1 23.45 ? CB C8V 301 A 1 HETATM 10 C CAN C8V . . . B 2 10.885 -7.708 22.663 1 21.35 ? CAN C8V 301 A 1 HETATM 11 N N C8V . . . B 2 12.229 -7.137 22.583 1 20.45 ? N C8V 301 A 1 HETATM 12 C CAG C8V . . . B 2 12.669 -6.396 21.539 1 17.42 ? CAG C8V 301 A 1 HETATM 13 O OAA C8V . . . B 2 13.656 -5.665 21.567 1 16.75 ? OAA C8V 301 A 1 HETATM 14 C CA C8V . . . B 2 13.022 -7.313 23.807 1 22.71 ? CA C8V 301 A 1 HETATM 15 C C C8V . . . B 2 13.583 -8.72 23.903 1 25.49 ? C C8V 301 A 1 HETATM 16 O O C8V . . . B 2 12.831 -9.697 23.803 1 28.74 ? O C8V 301 A 1 HETATM 17 N NAQ C8V . . . B 2 14.865 -8.83 24.279 1 27.65 ? NAQ C8V 301 A 1 HETATM 18 N NAP C8V . . . B 2 15.331 -9.761 25.2 1 32.24 ? NAP C8V 301 A 1 HETATM 19 C CAT C8V . . . B 2 14.675 -10.058 26.339 1 34.82 ? CAT C8V 301 A 1 HETATM 20 O OAB C8V . . . B 2 13.666 -9.451 26.715 1 35.34 ? OAB C8V 301 A 1 HETATM 21 C CAW C8V . . . B 2 15.328 -11.124 27.213 1 38.06 ? CAW C8V 301 A 1 HETATM 22 C CAJ C8V . . . B 2 14.418 -11.501 28.408 1 39.31 ? CAJ C8V 301 A 1 HETATM 23 C CAH C8V . . . B 2 15.176 -11.867 29.695 1 42.21 ? CAH C8V 301 A 1 HETATM 24 C CAI C8V . . . B 2 16.193 -10.796 30.082 1 42.6 ? CAI C8V 301 A 1 HETATM 25 N NAO C8V . . . B 2 16.554 -9.883 28.978 1 41.13 ? NAO C8V 301 A 1 HETATM 26 C CAM C8V . . . B 2 16.687 -10.608 27.698 1 40.27 ? CAM C8V 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #