data_9IOY # _model_server_result.job_id YkpmXc72-H1njBbUCUe3eQ _model_server_result.datetime_utc '2025-07-22 04:04:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ioy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 9IOY # _exptl.entry_id 9IOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.131 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzene-1,3-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9IOY _cell.length_a 146.956 _cell.length_b 146.956 _cell.length_c 146.956 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 73.478 73.478 3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -73.478 73.478 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 92 A CYS 69 1_555 B FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 A ND1 HIS 94 A HIS 71 1_555 B FE2 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 A SG CYS 111 A CYS 88 1_555 B FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc4 A ND1 HIS 114 A HIS 91 1_555 B FE2 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 A NE2 HIS 200 A HIS 177 1_555 C FE FE2 . A FE2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc6 A NE2 HIS 205 A HIS 182 1_555 C FE FE2 . A FE2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc7 A OD1 ASP 360 A ASP 337 1_555 C FE FE2 . A FE2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc8 A OD2 ASP 360 A ASP 337 1_555 C FE FE2 . A FE2 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? # _chem_comp.formula 'C8 H6 O4' _chem_comp.formula_weight 166.131 _chem_comp.id 8G0 _chem_comp.mon_nstd_flag . _chem_comp.name 'benzene-1,3-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C09 8G0 doub 1 n n O03 C02 8G0 doub 2 n n C09 C08 8G0 sing 3 n n C09 O11 8G0 sing 4 n n C12 C08 8G0 doub 5 n y C12 C04 8G0 sing 6 n y C08 C07 8G0 sing 7 n y C02 C04 8G0 sing 8 n n C02 O01 8G0 sing 9 n n C04 C05 8G0 doub 10 n y C07 C06 8G0 doub 11 n y C05 C06 8G0 sing 12 n y O01 H1 8G0 sing 13 n n C05 H2 8G0 sing 14 n n C06 H3 8G0 sing 15 n n C07 H4 8G0 sing 16 n n O11 H5 8G0 sing 17 n n C12 H6 8G0 sing 18 n n # _atom_sites.entry_id 9IOY _atom_sites.fract_transf_matrix[1][1] 0.006805 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 501 501 FES FES . C 3 FE2 A 1 502 503 FE2 FE2 . D 4 8G0 A 1 503 504 8G0 8G0 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 8G0 . . . D 4 -46.457 6.752 17.953 1 57.81 ? O01 8G0 503 A 1 HETATM 2 C C02 8G0 . . . D 4 -45.877 7.331 16.97 1 55.25 ? C02 8G0 503 A 1 HETATM 3 O O03 8G0 . . . D 4 -46.161 7.142 15.781 1 47.64 ? O03 8G0 503 A 1 HETATM 4 C C04 8G0 . . . D 4 -44.813 8.357 17.265 1 56.41 ? C04 8G0 503 A 1 HETATM 5 C C05 8G0 . . . D 4 -44.256 9.128 16.247 1 52.33 ? C05 8G0 503 A 1 HETATM 6 C C06 8G0 . . . D 4 -43.302 10.086 16.548 1 52.02 ? C06 8G0 503 A 1 HETATM 7 C C07 8G0 . . . D 4 -42.895 10.276 17.861 1 54.05 ? C07 8G0 503 A 1 HETATM 8 C C08 8G0 . . . D 4 -43.46 9.533 18.9 1 59.22 ? C08 8G0 503 A 1 HETATM 9 C C09 8G0 . . . D 4 -42.985 9.691 20.365 1 60.62 ? C09 8G0 503 A 1 HETATM 10 O O10 8G0 . . . D 4 -43.285 8.8 21.207 1 58.02 ? O10 8G0 503 A 1 HETATM 11 O O11 8G0 . . . D 4 -42.304 10.686 20.656 1 62.64 ? O11 8G0 503 A 1 HETATM 12 C C12 8G0 . . . D 4 -44.402 8.559 18.581 1 62.91 ? C12 8G0 503 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #