data_9IPW # _model_server_result.job_id TG_aCrg3pozlf9_YgVmjxQ _model_server_result.datetime_utc '2025-03-30 18:13:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ipw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":201}' # _entry.id 9IPW # _exptl.entry_id 9IPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.195 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-Hydroxy-4-methoxymethylcoumarin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9IPW _cell.length_a 94.443 _cell.length_b 94.443 _cell.length_c 361.486 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA trimeric 3 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 D,E,F 2 1 G,H,I 3 1 J,K,L,M,N 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 59 A GLU 59 1_555 A N CAS 60 A CAS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C CAS 60 A CAS 60 1_555 A N GLY 61 A GLY 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C LEU 88 A LEU 88 1_555 A N CAS 89 A CAS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C CAS 89 A CAS 89 1_555 A N ILE 90 A ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C PHE 25 C PHE 76 1_555 C N CAS 26 C CAS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 C C CAS 26 C CAS 77 1_555 C N ASN 27 C ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 D C GLU 59 D GLU 59 1_555 D N CAS 60 D CAS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 D C CAS 60 D CAS 60 1_555 D N GLY 61 D GLY 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 D C LEU 88 D LEU 88 1_555 D N CAS 89 D CAS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 D C CAS 89 D CAS 89 1_555 D N ILE 90 D ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 F C PHE 25 F PHE 76 1_555 F N CAS 26 F CAS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 F C CAS 26 F CAS 77 1_555 F N ASN 27 F ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 G C GLU 59 G GLU 59 1_555 G N CAS 60 G CAS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale14 G C CAS 60 G CAS 60 1_555 G N GLY 61 G GLY 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 G C LEU 88 G LEU 88 1_555 G N CAS 89 G CAS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 G C CAS 89 G CAS 89 1_555 G N ILE 90 G ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale17 I C PHE 25 I PHE 76 1_555 I N CAS 26 I CAS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 I C CAS 26 I CAS 77 1_555 I N ASN 27 I ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale19 J C GLU 59 J GLU 59 1_555 J N CAS 60 J CAS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 J C CAS 60 J CAS 60 1_555 J N GLY 61 J GLY 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale21 J C LEU 88 J LEU 88 1_555 J N CAS 89 J CAS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale22 J C CAS 89 J CAS 89 1_555 J N ILE 90 J ILE 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale23 L C PHE 25 L PHE 76 1_555 L N CAS 26 L CAS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale24 L C CAS 26 L CAS 77 1_555 L N ASN 27 L ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C11 H10 O4' _chem_comp.formula_weight 206.195 _chem_comp.id A1L2Z _chem_comp.mon_nstd_flag . _chem_comp.name 7-Hydroxy-4-methoxymethylcoumarin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(methoxymethyl)-7-oxidanyl-chromen-2-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1L2Z doub 1 n y C1 C6 A1L2Z sing 2 n y C2 C3 A1L2Z sing 3 n y C3 C4 A1L2Z doub 4 n y C3 O3 A1L2Z sing 5 n n C4 C5 A1L2Z sing 6 n y C5 C6 A1L2Z doub 7 n y C5 O1 A1L2Z sing 8 n n C6 C9 A1L2Z sing 9 n n O1 C7 A1L2Z sing 10 n n C7 C8 A1L2Z sing 11 n n C7 O2 A1L2Z doub 12 n n C8 C9 A1L2Z doub 13 n n C9 C10 A1L2Z sing 14 n n C10 O4 A1L2Z sing 15 n n O4 C11 A1L2Z sing 16 n n C1 H1 A1L2Z sing 17 n n C10 H2 A1L2Z sing 18 n n C10 H3 A1L2Z sing 19 n n C11 H4 A1L2Z sing 20 n n C11 H5 A1L2Z sing 21 n n C11 H6 A1L2Z sing 22 n n C2 H7 A1L2Z sing 23 n n C4 H8 A1L2Z sing 24 n n C8 H9 A1L2Z sing 25 n n O3 H10 A1L2Z sing 26 n n # _atom_sites.entry_id 9IPW _atom_sites.fract_transf_matrix[1][1] 0.010588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 A1L2Z K 1 201 201 A1L2Z D3 . N 5 HOH L 1 301 5 HOH HOH . N 5 HOH L 2 302 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1L2Z . . . M 4 -48.61 -10.303 19.407 1 50.12 ? C1 A1L2Z 201 K 1 HETATM 2 C C10 A1L2Z . . . M 4 -46.095 -9.41 21.082 1 61.71 ? C10 A1L2Z 201 K 1 HETATM 3 C C11 A1L2Z . . . M 4 -44.815 -9.963 23.053 1 58.57 ? C11 A1L2Z 201 K 1 HETATM 4 C C2 A1L2Z . . . M 4 -49.785 -10.669 18.737 1 43.99 ? C2 A1L2Z 201 K 1 HETATM 5 C C3 A1L2Z . . . M 4 -51.042 -10.305 19.224 1 45.62 ? C3 A1L2Z 201 K 1 HETATM 6 C C4 A1L2Z . . . M 4 -51.126 -9.569 20.393 1 41.37 ? C4 A1L2Z 201 K 1 HETATM 7 C C5 A1L2Z . . . M 4 -49.961 -9.209 21.056 1 49.11 ? C5 A1L2Z 201 K 1 HETATM 8 C C6 A1L2Z . . . M 4 -48.678 -9.559 20.583 1 51.93 ? C6 A1L2Z 201 K 1 HETATM 9 C C7 A1L2Z . . . M 4 -49.088 -8.092 22.94 1 52.56 ? C7 A1L2Z 201 K 1 HETATM 10 C C8 A1L2Z . . . M 4 -47.808 -8.411 22.542 1 55.48 ? C8 A1L2Z 201 K 1 HETATM 11 C C9 A1L2Z . . . M 4 -47.575 -9.129 21.374 1 53.32 ? C9 A1L2Z 201 K 1 HETATM 12 O O1 A1L2Z . . . M 4 -50.128 -8.501 22.187 1 51.17 ? O1 A1L2Z 201 K 1 HETATM 13 O O2 A1L2Z . . . M 4 -49.249 -7.459 23.941 1 48.88 ? O2 A1L2Z 201 K 1 HETATM 14 O O3 A1L2Z . . . M 4 -52.226 -10.662 18.566 1 47.23 ? O3 A1L2Z 201 K 1 HETATM 15 O O4 A1L2Z . . . M 4 -45.301 -8.974 22.178 1 63.18 ? O4 A1L2Z 201 K 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 470 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 15 #