data_9IR2 # _model_server_result.job_id FK6SkASKtxjfBPxl4wUyTQ _model_server_result.datetime_utc '2025-07-21 14:25:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ir2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 9IR2 # _exptl.entry_id 9IR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9IR2 _cell.length_a 64.6 _cell.length_b 64.6 _cell.length_c 230.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -38.368333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 218 n n C1 C2 GOL sing 219 n n C1 H11 GOL sing 220 n n C1 H12 GOL sing 221 n n O1 HO1 GOL sing 222 n n C2 O2 GOL sing 223 n n C2 C3 GOL sing 224 n n C2 H2 GOL sing 225 n n O2 HO2 GOL sing 226 n n C3 O3 GOL sing 227 n n C3 H31 GOL sing 228 n n C3 H32 GOL sing 229 n n O3 HO3 GOL sing 230 n n # _atom_sites.entry_id 9IR2 _atom_sites.fract_transf_matrix[1][1] 0.01548 _atom_sites.fract_transf_matrix[1][2] 0.008937 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 301 301 FMN FMN . C 3 DCM A 1 302 304 DCM DCM . D 4 GOL A 1 303 305 GOL GOL . E 5 HOH A 1 401 253 HOH HOH . E 5 HOH A 2 402 96 HOH HOH . E 5 HOH A 3 403 281 HOH HOH . E 5 HOH A 4 404 301 HOH HOH . E 5 HOH A 5 405 257 HOH HOH . E 5 HOH A 6 406 226 HOH HOH . E 5 HOH A 7 407 228 HOH HOH . E 5 HOH A 8 408 133 HOH HOH . E 5 HOH A 9 409 236 HOH HOH . E 5 HOH A 10 410 250 HOH HOH . E 5 HOH A 11 411 170 HOH HOH . E 5 HOH A 12 412 33 HOH HOH . E 5 HOH A 13 413 84 HOH HOH . E 5 HOH A 14 414 233 HOH HOH . E 5 HOH A 15 415 128 HOH HOH . E 5 HOH A 16 416 178 HOH HOH . E 5 HOH A 17 417 140 HOH HOH . E 5 HOH A 18 418 237 HOH HOH . E 5 HOH A 19 419 156 HOH HOH . E 5 HOH A 20 420 102 HOH HOH . E 5 HOH A 21 421 245 HOH HOH . E 5 HOH A 22 422 88 HOH HOH . E 5 HOH A 23 423 78 HOH HOH . E 5 HOH A 24 424 16 HOH HOH . E 5 HOH A 25 425 58 HOH HOH . E 5 HOH A 26 426 242 HOH HOH . E 5 HOH A 27 427 22 HOH HOH . E 5 HOH A 28 428 100 HOH HOH . E 5 HOH A 29 429 76 HOH HOH . E 5 HOH A 30 430 90 HOH HOH . E 5 HOH A 31 431 17 HOH HOH . E 5 HOH A 32 432 104 HOH HOH . E 5 HOH A 33 433 240 HOH HOH . E 5 HOH A 34 434 269 HOH HOH . E 5 HOH A 35 435 221 HOH HOH . E 5 HOH A 36 436 203 HOH HOH . E 5 HOH A 37 437 248 HOH HOH . E 5 HOH A 38 438 202 HOH HOH . E 5 HOH A 39 439 5 HOH HOH . E 5 HOH A 40 440 28 HOH HOH . E 5 HOH A 41 441 136 HOH HOH . E 5 HOH A 42 442 141 HOH HOH . E 5 HOH A 43 443 166 HOH HOH . E 5 HOH A 44 444 3 HOH HOH . E 5 HOH A 45 445 143 HOH HOH . E 5 HOH A 46 446 43 HOH HOH . E 5 HOH A 47 447 198 HOH HOH . E 5 HOH A 48 448 289 HOH HOH . E 5 HOH A 49 449 27 HOH HOH . E 5 HOH A 50 450 131 HOH HOH . E 5 HOH A 51 451 94 HOH HOH . E 5 HOH A 52 452 10 HOH HOH . E 5 HOH A 53 453 123 HOH HOH . E 5 HOH A 54 454 234 HOH HOH . E 5 HOH A 55 455 230 HOH HOH . E 5 HOH A 56 456 192 HOH HOH . E 5 HOH A 57 457 158 HOH HOH . E 5 HOH A 58 458 51 HOH HOH . E 5 HOH A 59 459 287 HOH HOH . E 5 HOH A 60 460 64 HOH HOH . E 5 HOH A 61 461 77 HOH HOH . E 5 HOH A 62 462 292 HOH HOH . E 5 HOH A 63 463 148 HOH HOH . E 5 HOH A 64 464 19 HOH HOH . E 5 HOH A 65 465 235 HOH HOH . E 5 HOH A 66 466 150 HOH HOH . E 5 HOH A 67 467 9 HOH HOH . E 5 HOH A 68 468 71 HOH HOH . E 5 HOH A 69 469 295 HOH HOH . E 5 HOH A 70 470 199 HOH HOH . E 5 HOH A 71 471 83 HOH HOH . E 5 HOH A 72 472 67 HOH HOH . E 5 HOH A 73 473 14 HOH HOH . E 5 HOH A 74 474 120 HOH HOH . E 5 HOH A 75 475 59 HOH HOH . E 5 HOH A 76 476 168 HOH HOH . E 5 HOH A 77 477 45 HOH HOH . E 5 HOH A 78 478 80 HOH HOH . E 5 HOH A 79 479 57 HOH HOH . E 5 HOH A 80 480 108 HOH HOH . E 5 HOH A 81 481 49 HOH HOH . E 5 HOH A 82 482 12 HOH HOH . E 5 HOH A 83 483 2 HOH HOH . E 5 HOH A 84 484 99 HOH HOH . E 5 HOH A 85 485 297 HOH HOH . E 5 HOH A 86 486 204 HOH HOH . E 5 HOH A 87 487 87 HOH HOH . E 5 HOH A 88 488 73 HOH HOH . E 5 HOH A 89 489 97 HOH HOH . E 5 HOH A 90 490 26 HOH HOH . E 5 HOH A 91 491 132 HOH HOH . E 5 HOH A 92 492 29 HOH HOH . E 5 HOH A 93 493 196 HOH HOH . E 5 HOH A 94 494 154 HOH HOH . E 5 HOH A 95 495 183 HOH HOH . E 5 HOH A 96 496 264 HOH HOH . E 5 HOH A 97 497 65 HOH HOH . E 5 HOH A 98 498 135 HOH HOH . E 5 HOH A 99 499 241 HOH HOH . E 5 HOH A 100 500 172 HOH HOH . E 5 HOH A 101 501 74 HOH HOH . E 5 HOH A 102 502 144 HOH HOH . E 5 HOH A 103 503 110 HOH HOH . E 5 HOH A 104 504 25 HOH HOH . E 5 HOH A 105 505 42 HOH HOH . E 5 HOH A 106 506 11 HOH HOH . E 5 HOH A 107 507 1 HOH HOH . E 5 HOH A 108 508 30 HOH HOH . E 5 HOH A 109 509 92 HOH HOH . E 5 HOH A 110 510 188 HOH HOH . E 5 HOH A 111 511 39 HOH HOH . E 5 HOH A 112 512 223 HOH HOH . E 5 HOH A 113 513 72 HOH HOH . E 5 HOH A 114 514 38 HOH HOH . E 5 HOH A 115 515 69 HOH HOH . E 5 HOH A 116 516 176 HOH HOH . E 5 HOH A 117 517 129 HOH HOH . E 5 HOH A 118 518 50 HOH HOH . E 5 HOH A 119 519 36 HOH HOH . E 5 HOH A 120 520 157 HOH HOH . E 5 HOH A 121 521 271 HOH HOH . E 5 HOH A 122 522 98 HOH HOH . E 5 HOH A 123 523 40 HOH HOH . E 5 HOH A 124 524 181 HOH HOH . E 5 HOH A 125 525 55 HOH HOH . E 5 HOH A 126 526 41 HOH HOH . E 5 HOH A 127 527 31 HOH HOH . E 5 HOH A 128 528 21 HOH HOH . E 5 HOH A 129 529 288 HOH HOH . E 5 HOH A 130 530 44 HOH HOH . E 5 HOH A 131 531 6 HOH HOH . E 5 HOH A 132 532 217 HOH HOH . E 5 HOH A 133 533 56 HOH HOH . E 5 HOH A 134 534 186 HOH HOH . E 5 HOH A 135 535 208 HOH HOH . E 5 HOH A 136 536 93 HOH HOH . E 5 HOH A 137 537 35 HOH HOH . E 5 HOH A 138 538 85 HOH HOH . E 5 HOH A 139 539 115 HOH HOH . E 5 HOH A 140 540 20 HOH HOH . E 5 HOH A 141 541 300 HOH HOH . E 5 HOH A 142 542 95 HOH HOH . E 5 HOH A 143 543 4 HOH HOH . E 5 HOH A 144 544 32 HOH HOH . E 5 HOH A 145 545 201 HOH HOH . E 5 HOH A 146 546 149 HOH HOH . E 5 HOH A 147 547 15 HOH HOH . E 5 HOH A 148 548 24 HOH HOH . E 5 HOH A 149 549 18 HOH HOH . E 5 HOH A 150 550 7 HOH HOH . E 5 HOH A 151 551 66 HOH HOH . E 5 HOH A 152 552 89 HOH HOH . E 5 HOH A 153 553 273 HOH HOH . E 5 HOH A 154 554 13 HOH HOH . E 5 HOH A 155 555 75 HOH HOH . E 5 HOH A 156 556 268 HOH HOH . E 5 HOH A 157 557 82 HOH HOH . E 5 HOH A 158 558 111 HOH HOH . E 5 HOH A 159 559 249 HOH HOH . E 5 HOH A 160 560 184 HOH HOH . E 5 HOH A 161 561 197 HOH HOH . E 5 HOH A 162 562 112 HOH HOH . E 5 HOH A 163 563 62 HOH HOH . E 5 HOH A 164 564 145 HOH HOH . E 5 HOH A 165 565 53 HOH HOH . E 5 HOH A 166 566 105 HOH HOH . E 5 HOH A 167 567 171 HOH HOH . E 5 HOH A 168 568 121 HOH HOH . E 5 HOH A 169 569 185 HOH HOH . E 5 HOH A 170 570 86 HOH HOH . E 5 HOH A 171 571 244 HOH HOH . E 5 HOH A 172 572 162 HOH HOH . E 5 HOH A 173 573 81 HOH HOH . E 5 HOH A 174 574 258 HOH HOH . E 5 HOH A 175 575 206 HOH HOH . E 5 HOH A 176 576 63 HOH HOH . E 5 HOH A 177 577 147 HOH HOH . E 5 HOH A 178 578 8 HOH HOH . E 5 HOH A 179 579 34 HOH HOH . E 5 HOH A 180 580 23 HOH HOH . E 5 HOH A 181 581 107 HOH HOH . E 5 HOH A 182 582 47 HOH HOH . E 5 HOH A 183 583 179 HOH HOH . E 5 HOH A 184 584 37 HOH HOH . E 5 HOH A 185 585 155 HOH HOH . E 5 HOH A 186 586 119 HOH HOH . E 5 HOH A 187 587 70 HOH HOH . E 5 HOH A 188 588 138 HOH HOH . E 5 HOH A 189 589 146 HOH HOH . E 5 HOH A 190 590 263 HOH HOH . E 5 HOH A 191 591 270 HOH HOH . E 5 HOH A 192 592 101 HOH HOH . E 5 HOH A 193 593 109 HOH HOH . E 5 HOH A 194 594 274 HOH HOH . E 5 HOH A 195 595 296 HOH HOH . E 5 HOH A 196 596 68 HOH HOH . E 5 HOH A 197 597 125 HOH HOH . E 5 HOH A 198 598 152 HOH HOH . E 5 HOH A 199 599 106 HOH HOH . E 5 HOH A 200 600 205 HOH HOH . E 5 HOH A 201 601 130 HOH HOH . E 5 HOH A 202 602 238 HOH HOH . E 5 HOH A 203 603 194 HOH HOH . E 5 HOH A 204 604 163 HOH HOH . E 5 HOH A 205 605 187 HOH HOH . E 5 HOH A 206 606 222 HOH HOH . E 5 HOH A 207 607 117 HOH HOH . E 5 HOH A 208 608 52 HOH HOH . E 5 HOH A 209 609 252 HOH HOH . E 5 HOH A 210 610 60 HOH HOH . E 5 HOH A 211 611 229 HOH HOH . E 5 HOH A 212 612 61 HOH HOH . E 5 HOH A 213 613 164 HOH HOH . E 5 HOH A 214 614 220 HOH HOH . E 5 HOH A 215 615 231 HOH HOH . E 5 HOH A 216 616 114 HOH HOH . E 5 HOH A 217 617 174 HOH HOH . E 5 HOH A 218 618 256 HOH HOH . E 5 HOH A 219 619 224 HOH HOH . E 5 HOH A 220 620 211 HOH HOH . E 5 HOH A 221 621 266 HOH HOH . E 5 HOH A 222 622 290 HOH HOH . E 5 HOH A 223 623 255 HOH HOH . E 5 HOH A 224 624 294 HOH HOH . E 5 HOH A 225 625 261 HOH HOH . E 5 HOH A 226 626 195 HOH HOH . E 5 HOH A 227 627 251 HOH HOH . E 5 HOH A 228 628 207 HOH HOH . E 5 HOH A 229 629 113 HOH HOH . E 5 HOH A 230 630 299 HOH HOH . E 5 HOH A 231 631 298 HOH HOH . E 5 HOH A 232 632 124 HOH HOH . E 5 HOH A 233 633 177 HOH HOH . E 5 HOH A 234 634 180 HOH HOH . E 5 HOH A 235 635 219 HOH HOH . E 5 HOH A 236 636 284 HOH HOH . E 5 HOH A 237 637 127 HOH HOH . E 5 HOH A 238 638 291 HOH HOH . E 5 HOH A 239 639 293 HOH HOH . E 5 HOH A 240 640 167 HOH HOH . E 5 HOH A 241 641 151 HOH HOH . E 5 HOH A 242 642 303 HOH HOH . E 5 HOH A 243 643 267 HOH HOH . E 5 HOH A 244 644 254 HOH HOH . E 5 HOH A 245 645 190 HOH HOH . E 5 HOH A 246 646 161 HOH HOH . E 5 HOH A 247 647 189 HOH HOH . E 5 HOH A 248 648 79 HOH HOH . E 5 HOH A 249 649 278 HOH HOH . E 5 HOH A 250 650 243 HOH HOH . E 5 HOH A 251 651 48 HOH HOH . E 5 HOH A 252 652 279 HOH HOH . E 5 HOH A 253 653 169 HOH HOH . E 5 HOH A 254 654 153 HOH HOH . E 5 HOH A 255 655 182 HOH HOH . E 5 HOH A 256 656 272 HOH HOH . E 5 HOH A 257 657 218 HOH HOH . E 5 HOH A 258 658 259 HOH HOH . E 5 HOH A 259 659 103 HOH HOH . E 5 HOH A 260 660 215 HOH HOH . E 5 HOH A 261 661 210 HOH HOH . E 5 HOH A 262 662 212 HOH HOH . E 5 HOH A 263 663 193 HOH HOH . E 5 HOH A 264 664 175 HOH HOH . E 5 HOH A 265 665 209 HOH HOH . E 5 HOH A 266 666 159 HOH HOH . E 5 HOH A 267 667 265 HOH HOH . E 5 HOH A 268 668 232 HOH HOH . E 5 HOH A 269 669 239 HOH HOH . E 5 HOH A 270 670 282 HOH HOH . E 5 HOH A 271 671 277 HOH HOH . E 5 HOH A 272 672 46 HOH HOH . E 5 HOH A 273 673 247 HOH HOH . E 5 HOH A 274 674 286 HOH HOH . E 5 HOH A 275 675 137 HOH HOH . E 5 HOH A 276 676 160 HOH HOH . E 5 HOH A 277 677 260 HOH HOH . E 5 HOH A 278 678 116 HOH HOH . E 5 HOH A 279 679 214 HOH HOH . E 5 HOH A 280 680 213 HOH HOH . E 5 HOH A 281 681 304 HOH HOH . E 5 HOH A 282 682 191 HOH HOH . E 5 HOH A 283 683 122 HOH HOH . E 5 HOH A 284 684 262 HOH HOH . E 5 HOH A 285 685 165 HOH HOH . E 5 HOH A 286 686 275 HOH HOH . E 5 HOH A 287 687 280 HOH HOH . E 5 HOH A 288 688 134 HOH HOH . E 5 HOH A 289 689 173 HOH HOH . E 5 HOH A 290 690 302 HOH HOH . E 5 HOH A 291 691 142 HOH HOH . E 5 HOH A 292 692 126 HOH HOH . E 5 HOH A 293 693 91 HOH HOH . E 5 HOH A 294 694 276 HOH HOH . E 5 HOH A 295 695 200 HOH HOH . E 5 HOH A 296 696 225 HOH HOH . E 5 HOH A 297 697 227 HOH HOH . E 5 HOH A 298 698 246 HOH HOH . E 5 HOH A 299 699 54 HOH HOH . E 5 HOH A 300 700 285 HOH HOH . E 5 HOH A 301 701 139 HOH HOH . E 5 HOH A 302 702 216 HOH HOH . E 5 HOH A 303 703 283 HOH HOH . E 5 HOH A 304 704 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 26.014 -31.427 -10.466 1 31.86 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 25.538 -32.539 -11.167 1 27.57 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 27.571 -31.349 -10.56 1 26.83 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 27.954 -30.867 -11.767 1 21.31 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 27.956 -30.316 -9.474 1 27.02 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 29.351 -30.174 -9.477 1 22.4 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #