data_9IS9 # _model_server_result.job_id 6JzJJJwxocx_hL3foe-bZQ _model_server_result.datetime_utc '2025-01-09 18:13:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9is9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9IS9 # _exptl.entry_id 9IS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.375 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9IS9 _cell.length_a 115.605 _cell.length_b 115.605 _cell.length_c 113.326 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H19 N7 O7' _chem_comp.formula_weight 433.375 _chem_comp.id 9L9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2A C2 9L9 sing 1 n n N1 C2 9L9 doub 2 n n N1 C6 9L9 sing 3 n n C2 N3 9L9 sing 4 n n N3 C4 9L9 sing 5 n n C4 O4A 9L9 doub 6 n n C4 C5 9L9 sing 7 n n N5A C5 9L9 sing 8 n n N5A CAW 9L9 sing 9 n n C5 C6 9L9 doub 10 n n C6 N7 9L9 sing 11 n n O8A CAW 9L9 doub 12 n n N9 C1B 9L9 sing 13 n n N9 CAW 9L9 sing 14 n n C1B C2B 9L9 sing 15 n y C1B C6B 9L9 doub 16 n y C2B C3B 9L9 doub 17 n y C3B C4B 9L9 sing 18 n y C4B C5B 9L9 doub 19 n y C4B C7B 9L9 sing 20 n n C5B C6B 9L9 sing 21 n y C7B O7B 9L9 doub 22 n n C7B N 9L9 sing 23 n n N CA 9L9 sing 24 n n CB CG 9L9 sing 25 n n CB CA 9L9 sing 26 n n CG CD 9L9 sing 27 n n CD OE1 9L9 doub 28 n n CD OE2 9L9 sing 29 n n C O 9L9 sing 30 n n C OXT 9L9 doub 31 n n C CA 9L9 sing 32 n n N2A H2A1 9L9 sing 33 n n N2A H2A2 9L9 sing 34 n n N7 H71N 9L9 sing 35 n n N7 H72N 9L9 sing 36 n n N9 H9 9L9 sing 37 n n C2B H2B 9L9 sing 38 n n C6B H6B 9L9 sing 39 n n C3B H3B 9L9 sing 40 n n C5B H5B 9L9 sing 41 n n N H 9L9 sing 42 n n CA HA 9L9 sing 43 n n CB HB1C 9L9 sing 44 n n CB HB2C 9L9 sing 45 n n CG HG1C 9L9 sing 46 n n CG HG2C 9L9 sing 47 n n OE2 HE2 9L9 sing 48 n n O HB 9L9 sing 49 n n N5A H5A 9L9 sing 50 n n N3 HN3 9L9 sing 51 n n # _atom_sites.entry_id 9IS9 _atom_sites.fract_transf_matrix[1][1] 0.00865 _atom_sites.fract_transf_matrix[1][2] 0.004994 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9L9 A 1 401 401 9L9 LIG . D 3 NAD A 1 402 501 NAD NAD . E 2 9L9 B 1 401 401 9L9 LIG . F 3 NAD B 1 402 501 NAD NAD . G 4 PO4 B 1 403 1 PO4 PO4 . H 4 PO4 B 1 404 2 PO4 PO4 . I 5 HOH A 1 501 27 HOH HOH . I 5 HOH A 2 502 86 HOH HOH . I 5 HOH A 3 503 82 HOH HOH . I 5 HOH A 4 504 66 HOH HOH . I 5 HOH A 5 505 42 HOH HOH . I 5 HOH A 6 506 31 HOH HOH . I 5 HOH A 7 507 11 HOH HOH . I 5 HOH A 8 508 8 HOH HOH . I 5 HOH A 9 509 60 HOH HOH . I 5 HOH A 10 510 7 HOH HOH . I 5 HOH A 11 511 9 HOH HOH . I 5 HOH A 12 512 45 HOH HOH . I 5 HOH A 13 513 46 HOH HOH . I 5 HOH A 14 514 47 HOH HOH . I 5 HOH A 15 515 4 HOH HOH . I 5 HOH A 16 516 29 HOH HOH . I 5 HOH A 17 517 85 HOH HOH . I 5 HOH A 18 518 61 HOH HOH . I 5 HOH A 19 519 25 HOH HOH . I 5 HOH A 20 520 50 HOH HOH . I 5 HOH A 21 521 54 HOH HOH . I 5 HOH A 22 522 22 HOH HOH . I 5 HOH A 23 523 3 HOH HOH . I 5 HOH A 24 524 1 HOH HOH . I 5 HOH A 25 525 100 HOH HOH . I 5 HOH A 26 526 58 HOH HOH . I 5 HOH A 27 527 52 HOH HOH . I 5 HOH A 28 528 63 HOH HOH . I 5 HOH A 29 529 49 HOH HOH . I 5 HOH A 30 530 14 HOH HOH . I 5 HOH A 31 531 88 HOH HOH . I 5 HOH A 32 532 79 HOH HOH . I 5 HOH A 33 533 105 HOH HOH . I 5 HOH A 34 534 40 HOH HOH . I 5 HOH A 35 535 56 HOH HOH . I 5 HOH A 36 536 16 HOH HOH . I 5 HOH A 37 537 38 HOH HOH . I 5 HOH A 38 538 70 HOH HOH . I 5 HOH A 39 539 51 HOH HOH . I 5 HOH A 40 540 17 HOH HOH . I 5 HOH A 41 541 37 HOH HOH . I 5 HOH A 42 542 77 HOH HOH . I 5 HOH A 43 543 32 HOH HOH . I 5 HOH A 44 544 72 HOH HOH . I 5 HOH A 45 545 39 HOH HOH . I 5 HOH A 46 546 95 HOH HOH . I 5 HOH A 47 547 78 HOH HOH . J 5 HOH B 1 501 33 HOH HOH . J 5 HOH B 2 502 76 HOH HOH . J 5 HOH B 3 503 44 HOH HOH . J 5 HOH B 4 504 35 HOH HOH . J 5 HOH B 5 505 24 HOH HOH . J 5 HOH B 6 506 57 HOH HOH . J 5 HOH B 7 507 28 HOH HOH . J 5 HOH B 8 508 43 HOH HOH . J 5 HOH B 9 509 5 HOH HOH . J 5 HOH B 10 510 12 HOH HOH . J 5 HOH B 11 511 53 HOH HOH . J 5 HOH B 12 512 13 HOH HOH . J 5 HOH B 13 513 18 HOH HOH . J 5 HOH B 14 514 87 HOH HOH . J 5 HOH B 15 515 26 HOH HOH . J 5 HOH B 16 516 6 HOH HOH . J 5 HOH B 17 517 36 HOH HOH . J 5 HOH B 18 518 19 HOH HOH . J 5 HOH B 19 519 34 HOH HOH . J 5 HOH B 20 520 21 HOH HOH . J 5 HOH B 21 521 2 HOH HOH . J 5 HOH B 22 522 30 HOH HOH . J 5 HOH B 23 523 23 HOH HOH . J 5 HOH B 24 524 10 HOH HOH . J 5 HOH B 25 525 55 HOH HOH . J 5 HOH B 26 526 73 HOH HOH . J 5 HOH B 27 527 15 HOH HOH . J 5 HOH B 28 528 20 HOH HOH . J 5 HOH B 29 529 89 HOH HOH . J 5 HOH B 30 530 65 HOH HOH . J 5 HOH B 31 531 84 HOH HOH . J 5 HOH B 32 532 81 HOH HOH . J 5 HOH B 33 533 62 HOH HOH . J 5 HOH B 34 534 41 HOH HOH . J 5 HOH B 35 535 67 HOH HOH . J 5 HOH B 36 536 93 HOH HOH . J 5 HOH B 37 537 101 HOH HOH . J 5 HOH B 38 538 94 HOH HOH . J 5 HOH B 39 539 83 HOH HOH . J 5 HOH B 40 540 98 HOH HOH . J 5 HOH B 41 541 80 HOH HOH . J 5 HOH B 42 542 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2A 9L9 . . . C 2 -60.897 23.97 23.516 1 36.84 ? N2A 9L9 401 A 1 HETATM 2 N N1 9L9 . . . C 2 -59.015 25.392 23.916 1 37.01 ? N1 9L9 401 A 1 HETATM 3 C C2 9L9 . . . C 2 -59.554 24.42 23.203 1 36.41 ? C2 9L9 401 A 1 HETATM 4 N N3 9L9 . . . C 2 -58.916 23.831 22.202 1 37.71 ? N3 9L9 401 A 1 HETATM 5 C C4 9L9 . . . C 2 -57.704 24.181 21.841 1 39.93 ? C4 9L9 401 A 1 HETATM 6 O O4A 9L9 . . . C 2 -57.11 23.673 20.916 1 42.08 ? O4A 9L9 401 A 1 HETATM 7 N N5A 9L9 . . . C 2 -55.777 25.62 22.213 1 36.34 ? N5A 9L9 401 A 1 HETATM 8 C C5 9L9 . . . C 2 -57.118 25.2 22.573 1 34.39 ? C5 9L9 401 A 1 HETATM 9 C C6 9L9 . . . C 2 -57.793 25.799 23.618 1 38.02 ? C6 9L9 401 A 1 HETATM 10 N N7 9L9 . . . C 2 -57.121 26.864 24.37 1 36.07 ? N7 9L9 401 A 1 HETATM 11 O O8A 9L9 . . . C 2 -56.579 27.193 20.729 1 40.42 ? O8A 9L9 401 A 1 HETATM 12 N N9 9L9 . . . C 2 -54.264 27.02 20.939 1 44.34 ? N9 9L9 401 A 1 HETATM 13 C C1B 9L9 . . . C 2 -53.877 28.009 19.954 1 44.02 ? C1B 9L9 401 A 1 HETATM 14 C C2B 9L9 . . . C 2 -54.645 28.158 18.805 1 41.23 ? C2B 9L9 401 A 1 HETATM 15 C C3B 9L9 . . . C 2 -54.276 29.079 17.832 1 44.02 ? C3B 9L9 401 A 1 HETATM 16 C C4B 9L9 . . . C 2 -53.129 29.835 18.017 1 47.86 ? C4B 9L9 401 A 1 HETATM 17 C C5B 9L9 . . . C 2 -52.352 29.674 19.158 1 44.96 ? C5B 9L9 401 A 1 HETATM 18 C C6B 9L9 . . . C 2 -52.721 28.748 20.129 1 45.78 ? C6B 9L9 401 A 1 HETATM 19 C C7B 9L9 . . . C 2 -52.676 30.854 16.97 1 49.44 ? C7B 9L9 401 A 1 HETATM 20 O O7B 9L9 . . . C 2 -53.417 31.236 16.125 1 44.9 ? O7B 9L9 401 A 1 HETATM 21 C CAW 9L9 . . . C 2 -55.63 26.666 21.24 1 38.31 ? CAW 9L9 401 A 1 HETATM 22 N N 9L9 . . . C 2 -51.305 31.336 17.076 1 46.04 ? N 9L9 401 A 1 HETATM 23 C CA 9L9 . . . C 2 -50.724 32.287 16.147 1 50.32 ? CA 9L9 401 A 1 HETATM 24 C C 9L9 . . . C 2 -49.255 31.897 16.136 1 49.53 ? C 9L9 401 A 1 HETATM 25 O OXT 9L9 . . . C 2 -48.476 32.332 15.251 1 48.39 ? OXT 9L9 401 A 1 HETATM 26 C CB 9L9 . . . C 2 -50.86 33.733 16.635 1 53.23 ? CB 9L9 401 A 1 HETATM 27 C CG 9L9 . . . C 2 -51.685 33.856 17.915 1 58.32 ? CG 9L9 401 A 1 HETATM 28 C CD 9L9 . . . C 2 -51.796 35.296 18.401 1 63.81 ? CD 9L9 401 A 1 HETATM 29 O OE1 9L9 . . . C 2 -51.399 35.602 19.557 1 64.81 ? OE1 9L9 401 A 1 HETATM 30 O OE2 9L9 . . . C 2 -52.285 36.17 17.642 1 67.88 ? OE2 9L9 401 A 1 HETATM 31 O O 9L9 . . . C 2 -48.84 31.107 17.026 1 48.19 ? O 9L9 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #