data_9IS9 # _model_server_result.job_id dNH0YAu912O5kdbBgJF0Kg _model_server_result.datetime_utc '2025-01-09 18:31:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9is9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 9IS9 # _exptl.entry_id 9IS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.375 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9IS9 _cell.length_a 115.605 _cell.length_b 115.605 _cell.length_c 113.326 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H19 N7 O7' _chem_comp.formula_weight 433.375 _chem_comp.id 9L9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2A C2 9L9 sing 1 n n N1 C2 9L9 doub 2 n n N1 C6 9L9 sing 3 n n C2 N3 9L9 sing 4 n n N3 C4 9L9 sing 5 n n C4 O4A 9L9 doub 6 n n C4 C5 9L9 sing 7 n n N5A C5 9L9 sing 8 n n N5A CAW 9L9 sing 9 n n C5 C6 9L9 doub 10 n n C6 N7 9L9 sing 11 n n O8A CAW 9L9 doub 12 n n N9 C1B 9L9 sing 13 n n N9 CAW 9L9 sing 14 n n C1B C2B 9L9 sing 15 n y C1B C6B 9L9 doub 16 n y C2B C3B 9L9 doub 17 n y C3B C4B 9L9 sing 18 n y C4B C5B 9L9 doub 19 n y C4B C7B 9L9 sing 20 n n C5B C6B 9L9 sing 21 n y C7B O7B 9L9 doub 22 n n C7B N 9L9 sing 23 n n N CA 9L9 sing 24 n n CB CG 9L9 sing 25 n n CB CA 9L9 sing 26 n n CG CD 9L9 sing 27 n n CD OE1 9L9 doub 28 n n CD OE2 9L9 sing 29 n n C O 9L9 sing 30 n n C OXT 9L9 doub 31 n n C CA 9L9 sing 32 n n N2A H2A1 9L9 sing 33 n n N2A H2A2 9L9 sing 34 n n N7 H71N 9L9 sing 35 n n N7 H72N 9L9 sing 36 n n N9 H9 9L9 sing 37 n n C2B H2B 9L9 sing 38 n n C6B H6B 9L9 sing 39 n n C3B H3B 9L9 sing 40 n n C5B H5B 9L9 sing 41 n n N H 9L9 sing 42 n n CA HA 9L9 sing 43 n n CB HB1C 9L9 sing 44 n n CB HB2C 9L9 sing 45 n n CG HG1C 9L9 sing 46 n n CG HG2C 9L9 sing 47 n n OE2 HE2 9L9 sing 48 n n O HB 9L9 sing 49 n n N5A H5A 9L9 sing 50 n n N3 HN3 9L9 sing 51 n n # _atom_sites.entry_id 9IS9 _atom_sites.fract_transf_matrix[1][1] 0.00865 _atom_sites.fract_transf_matrix[1][2] 0.004994 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9L9 A 1 401 401 9L9 LIG . D 3 NAD A 1 402 501 NAD NAD . E 2 9L9 B 1 401 401 9L9 LIG . F 3 NAD B 1 402 501 NAD NAD . G 4 PO4 B 1 403 1 PO4 PO4 . H 4 PO4 B 1 404 2 PO4 PO4 . I 5 HOH A 1 501 27 HOH HOH . I 5 HOH A 2 502 86 HOH HOH . I 5 HOH A 3 503 82 HOH HOH . I 5 HOH A 4 504 66 HOH HOH . I 5 HOH A 5 505 42 HOH HOH . I 5 HOH A 6 506 31 HOH HOH . I 5 HOH A 7 507 11 HOH HOH . I 5 HOH A 8 508 8 HOH HOH . I 5 HOH A 9 509 60 HOH HOH . I 5 HOH A 10 510 7 HOH HOH . I 5 HOH A 11 511 9 HOH HOH . I 5 HOH A 12 512 45 HOH HOH . I 5 HOH A 13 513 46 HOH HOH . I 5 HOH A 14 514 47 HOH HOH . I 5 HOH A 15 515 4 HOH HOH . I 5 HOH A 16 516 29 HOH HOH . I 5 HOH A 17 517 85 HOH HOH . I 5 HOH A 18 518 61 HOH HOH . I 5 HOH A 19 519 25 HOH HOH . I 5 HOH A 20 520 50 HOH HOH . I 5 HOH A 21 521 54 HOH HOH . I 5 HOH A 22 522 22 HOH HOH . I 5 HOH A 23 523 3 HOH HOH . I 5 HOH A 24 524 1 HOH HOH . I 5 HOH A 25 525 100 HOH HOH . I 5 HOH A 26 526 58 HOH HOH . I 5 HOH A 27 527 52 HOH HOH . I 5 HOH A 28 528 63 HOH HOH . I 5 HOH A 29 529 49 HOH HOH . I 5 HOH A 30 530 14 HOH HOH . I 5 HOH A 31 531 88 HOH HOH . I 5 HOH A 32 532 79 HOH HOH . I 5 HOH A 33 533 105 HOH HOH . I 5 HOH A 34 534 40 HOH HOH . I 5 HOH A 35 535 56 HOH HOH . I 5 HOH A 36 536 16 HOH HOH . I 5 HOH A 37 537 38 HOH HOH . I 5 HOH A 38 538 70 HOH HOH . I 5 HOH A 39 539 51 HOH HOH . I 5 HOH A 40 540 17 HOH HOH . I 5 HOH A 41 541 37 HOH HOH . I 5 HOH A 42 542 77 HOH HOH . I 5 HOH A 43 543 32 HOH HOH . I 5 HOH A 44 544 72 HOH HOH . I 5 HOH A 45 545 39 HOH HOH . I 5 HOH A 46 546 95 HOH HOH . I 5 HOH A 47 547 78 HOH HOH . J 5 HOH B 1 501 33 HOH HOH . J 5 HOH B 2 502 76 HOH HOH . J 5 HOH B 3 503 44 HOH HOH . J 5 HOH B 4 504 35 HOH HOH . J 5 HOH B 5 505 24 HOH HOH . J 5 HOH B 6 506 57 HOH HOH . J 5 HOH B 7 507 28 HOH HOH . J 5 HOH B 8 508 43 HOH HOH . J 5 HOH B 9 509 5 HOH HOH . J 5 HOH B 10 510 12 HOH HOH . J 5 HOH B 11 511 53 HOH HOH . J 5 HOH B 12 512 13 HOH HOH . J 5 HOH B 13 513 18 HOH HOH . J 5 HOH B 14 514 87 HOH HOH . J 5 HOH B 15 515 26 HOH HOH . J 5 HOH B 16 516 6 HOH HOH . J 5 HOH B 17 517 36 HOH HOH . J 5 HOH B 18 518 19 HOH HOH . J 5 HOH B 19 519 34 HOH HOH . J 5 HOH B 20 520 21 HOH HOH . J 5 HOH B 21 521 2 HOH HOH . J 5 HOH B 22 522 30 HOH HOH . J 5 HOH B 23 523 23 HOH HOH . J 5 HOH B 24 524 10 HOH HOH . J 5 HOH B 25 525 55 HOH HOH . J 5 HOH B 26 526 73 HOH HOH . J 5 HOH B 27 527 15 HOH HOH . J 5 HOH B 28 528 20 HOH HOH . J 5 HOH B 29 529 89 HOH HOH . J 5 HOH B 30 530 65 HOH HOH . J 5 HOH B 31 531 84 HOH HOH . J 5 HOH B 32 532 81 HOH HOH . J 5 HOH B 33 533 62 HOH HOH . J 5 HOH B 34 534 41 HOH HOH . J 5 HOH B 35 535 67 HOH HOH . J 5 HOH B 36 536 93 HOH HOH . J 5 HOH B 37 537 101 HOH HOH . J 5 HOH B 38 538 94 HOH HOH . J 5 HOH B 39 539 83 HOH HOH . J 5 HOH B 40 540 98 HOH HOH . J 5 HOH B 41 541 80 HOH HOH . J 5 HOH B 42 542 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2A 9L9 . . . E 2 -56.305 -9.069 33.951 1 42.92 ? N2A 9L9 401 B 1 HETATM 2 N N1 9L9 . . . E 2 -54.102 -9.977 33.79 1 44.2 ? N1 9L9 401 B 1 HETATM 3 C C2 9L9 . . . E 2 -54.926 -9.162 34.408 1 41.69 ? C2 9L9 401 B 1 HETATM 4 N N3 9L9 . . . E 2 -54.523 -8.418 35.425 1 40.94 ? N3 9L9 401 B 1 HETATM 5 C C4 9L9 . . . E 2 -53.287 -8.445 35.888 1 45.19 ? C4 9L9 401 B 1 HETATM 6 O O4A 9L9 . . . E 2 -52.929 -7.77 36.821 1 45.64 ? O4A 9L9 401 B 1 HETATM 7 N N5A 9L9 . . . E 2 -51.024 -9.358 35.708 1 42.06 ? N5A 9L9 401 B 1 HETATM 8 C C5 9L9 . . . E 2 -52.405 -9.304 35.249 1 40.61 ? C5 9L9 401 B 1 HETATM 9 C C6 9L9 . . . E 2 -52.846 -10.06 34.186 1 41.93 ? C6 9L9 401 B 1 HETATM 10 N N7 9L9 . . . E 2 -51.901 -10.942 33.525 1 45.1 ? N7 9L9 401 B 1 HETATM 11 O O8A 9L9 . . . E 2 -51.435 -10.972 37.291 1 47.5 ? O8A 9L9 401 B 1 HETATM 12 N N9 9L9 . . . E 2 -49.258 -10.205 37.177 1 52.16 ? N9 9L9 401 B 1 HETATM 13 C C1B 9L9 . . . E 2 -48.692 -10.992 38.244 1 50.4 ? C1B 9L9 401 B 1 HETATM 14 C C2B 9L9 . . . E 2 -49.455 -11.272 39.373 1 50.07 ? C2B 9L9 401 B 1 HETATM 15 C C3B 9L9 . . . E 2 -48.893 -11.997 40.397 1 50.62 ? C3B 9L9 401 B 1 HETATM 16 C C4B 9L9 . . . E 2 -47.579 -12.418 40.301 1 52.24 ? C4B 9L9 401 B 1 HETATM 17 C C5B 9L9 . . . E 2 -46.808 -12.117 39.197 1 53.35 ? C5B 9L9 401 B 1 HETATM 18 C C6B 9L9 . . . E 2 -47.375 -11.394 38.157 1 55.05 ? C6B 9L9 401 B 1 HETATM 19 C C7B 9L9 . . . E 2 -46.959 -13.211 41.443 1 56.88 ? C7B 9L9 401 B 1 HETATM 20 O O7B 9L9 . . . E 2 -47.66 -13.74 42.24 1 55.77 ? O7B 9L9 401 B 1 HETATM 21 C CAW 9L9 . . . E 2 -50.647 -10.248 36.78 1 49.1 ? CAW 9L9 401 B 1 HETATM 22 N N 9L9 . . . E 2 -45.508 -13.276 41.508 1 53.97 ? N 9L9 401 B 1 HETATM 23 C CA 9L9 . . . E 2 -44.803 -13.977 42.558 1 58.28 ? CA 9L9 401 B 1 HETATM 24 C C 9L9 . . . E 2 -43.477 -13.252 42.675 1 61.38 ? C 9L9 401 B 1 HETATM 25 O OXT 9L9 . . . E 2 -42.843 -13.29 43.756 1 65.78 ? OXT 9L9 401 B 1 HETATM 26 C CB 9L9 . . . E 2 -44.512 -15.442 42.239 1 63.13 ? CB 9L9 401 B 1 HETATM 27 C CG 9L9 . . . E 2 -45.058 -15.909 40.893 1 63.69 ? CG 9L9 401 B 1 HETATM 28 C CD 9L9 . . . E 2 -44.418 -17.218 40.436 1 67.93 ? CD 9L9 401 B 1 HETATM 29 O OE1 9L9 . . . E 2 -44.346 -18.192 41.23 1 72.21 ? OE1 9L9 401 B 1 HETATM 30 O OE2 9L9 . . . E 2 -43.968 -17.324 39.261 1 73.76 ? OE2 9L9 401 B 1 HETATM 31 O O 9L9 . . . E 2 -43.04 -12.603 41.688 1 60.37 ? O 9L9 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #