data_9IS9 # _model_server_result.job_id F9Ndi0XYJp3AcGEjS0R6gw _model_server_result.datetime_utc '2025-01-09 18:13:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9is9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 9IS9 # _exptl.entry_id 9IS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9IS9 _cell.length_a 115.605 _cell.length_b 115.605 _cell.length_c 113.326 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 288 n n PA O2A NAD sing 289 n n PA O5B NAD sing 290 n n PA O3 NAD sing 291 n n O2A HOA2 NAD sing 292 n n O5B C5B NAD sing 293 n n C5B C4B NAD sing 294 n n C5B H51A NAD sing 295 n n C5B H52A NAD sing 296 n n C4B O4B NAD sing 297 n n C4B C3B NAD sing 298 n n C4B H4B NAD sing 299 n n O4B C1B NAD sing 300 n n C3B O3B NAD sing 301 n n C3B C2B NAD sing 302 n n C3B H3B NAD sing 303 n n O3B HO3A NAD sing 304 n n C2B O2B NAD sing 305 n n C2B C1B NAD sing 306 n n C2B H2B NAD sing 307 n n O2B HO2A NAD sing 308 n n C1B N9A NAD sing 309 n n C1B H1B NAD sing 310 n n N9A C8A NAD sing 311 n y N9A C4A NAD sing 312 n y C8A N7A NAD doub 313 n y C8A H8A NAD sing 314 n n N7A C5A NAD sing 315 n y C5A C6A NAD sing 316 n y C5A C4A NAD doub 317 n y C6A N6A NAD sing 318 n n C6A N1A NAD doub 319 n y N6A H61A NAD sing 320 n n N6A H62A NAD sing 321 n n N1A C2A NAD sing 322 n y C2A N3A NAD doub 323 n y C2A H2A NAD sing 324 n n N3A C4A NAD sing 325 n y O3 PN NAD sing 326 n n PN O1N NAD doub 327 n n PN O2N NAD sing 328 n n PN O5D NAD sing 329 n n O5D C5D NAD sing 330 n n C5D C4D NAD sing 331 n n C5D H51N NAD sing 332 n n C5D H52N NAD sing 333 n n C4D O4D NAD sing 334 n n C4D C3D NAD sing 335 n n C4D H4D NAD sing 336 n n O4D C1D NAD sing 337 n n C3D O3D NAD sing 338 n n C3D C2D NAD sing 339 n n C3D H3D NAD sing 340 n n O3D HO3N NAD sing 341 n n C2D O2D NAD sing 342 n n C2D C1D NAD sing 343 n n C2D H2D NAD sing 344 n n O2D HO2N NAD sing 345 n n C1D N1N NAD sing 346 n n C1D H1D NAD sing 347 n n N1N C2N NAD sing 348 n y N1N C6N NAD doub 349 n y C2N C3N NAD doub 350 n y C2N H2N NAD sing 351 n n C3N C7N NAD sing 352 n n C3N C4N NAD sing 353 n y C7N O7N NAD doub 354 n n C7N N7N NAD sing 355 n n N7N H71N NAD sing 356 n n N7N H72N NAD sing 357 n n C4N C5N NAD doub 358 n y C4N H4N NAD sing 359 n n C5N C6N NAD sing 360 n y C5N H5N NAD sing 361 n n C6N H6N NAD sing 362 n n # _atom_sites.entry_id 9IS9 _atom_sites.fract_transf_matrix[1][1] 0.00865 _atom_sites.fract_transf_matrix[1][2] 0.004994 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9L9 A 1 401 401 9L9 LIG . D 3 NAD A 1 402 501 NAD NAD . E 2 9L9 B 1 401 401 9L9 LIG . F 3 NAD B 1 402 501 NAD NAD . G 4 PO4 B 1 403 1 PO4 PO4 . H 4 PO4 B 1 404 2 PO4 PO4 . I 5 HOH A 1 501 27 HOH HOH . I 5 HOH A 2 502 86 HOH HOH . I 5 HOH A 3 503 82 HOH HOH . I 5 HOH A 4 504 66 HOH HOH . I 5 HOH A 5 505 42 HOH HOH . I 5 HOH A 6 506 31 HOH HOH . I 5 HOH A 7 507 11 HOH HOH . I 5 HOH A 8 508 8 HOH HOH . I 5 HOH A 9 509 60 HOH HOH . I 5 HOH A 10 510 7 HOH HOH . I 5 HOH A 11 511 9 HOH HOH . I 5 HOH A 12 512 45 HOH HOH . I 5 HOH A 13 513 46 HOH HOH . I 5 HOH A 14 514 47 HOH HOH . I 5 HOH A 15 515 4 HOH HOH . I 5 HOH A 16 516 29 HOH HOH . I 5 HOH A 17 517 85 HOH HOH . I 5 HOH A 18 518 61 HOH HOH . I 5 HOH A 19 519 25 HOH HOH . I 5 HOH A 20 520 50 HOH HOH . I 5 HOH A 21 521 54 HOH HOH . I 5 HOH A 22 522 22 HOH HOH . I 5 HOH A 23 523 3 HOH HOH . I 5 HOH A 24 524 1 HOH HOH . I 5 HOH A 25 525 100 HOH HOH . I 5 HOH A 26 526 58 HOH HOH . I 5 HOH A 27 527 52 HOH HOH . I 5 HOH A 28 528 63 HOH HOH . I 5 HOH A 29 529 49 HOH HOH . I 5 HOH A 30 530 14 HOH HOH . I 5 HOH A 31 531 88 HOH HOH . I 5 HOH A 32 532 79 HOH HOH . I 5 HOH A 33 533 105 HOH HOH . I 5 HOH A 34 534 40 HOH HOH . I 5 HOH A 35 535 56 HOH HOH . I 5 HOH A 36 536 16 HOH HOH . I 5 HOH A 37 537 38 HOH HOH . I 5 HOH A 38 538 70 HOH HOH . I 5 HOH A 39 539 51 HOH HOH . I 5 HOH A 40 540 17 HOH HOH . I 5 HOH A 41 541 37 HOH HOH . I 5 HOH A 42 542 77 HOH HOH . I 5 HOH A 43 543 32 HOH HOH . I 5 HOH A 44 544 72 HOH HOH . I 5 HOH A 45 545 39 HOH HOH . I 5 HOH A 46 546 95 HOH HOH . I 5 HOH A 47 547 78 HOH HOH . J 5 HOH B 1 501 33 HOH HOH . J 5 HOH B 2 502 76 HOH HOH . J 5 HOH B 3 503 44 HOH HOH . J 5 HOH B 4 504 35 HOH HOH . J 5 HOH B 5 505 24 HOH HOH . J 5 HOH B 6 506 57 HOH HOH . J 5 HOH B 7 507 28 HOH HOH . J 5 HOH B 8 508 43 HOH HOH . J 5 HOH B 9 509 5 HOH HOH . J 5 HOH B 10 510 12 HOH HOH . J 5 HOH B 11 511 53 HOH HOH . J 5 HOH B 12 512 13 HOH HOH . J 5 HOH B 13 513 18 HOH HOH . J 5 HOH B 14 514 87 HOH HOH . J 5 HOH B 15 515 26 HOH HOH . J 5 HOH B 16 516 6 HOH HOH . J 5 HOH B 17 517 36 HOH HOH . J 5 HOH B 18 518 19 HOH HOH . J 5 HOH B 19 519 34 HOH HOH . J 5 HOH B 20 520 21 HOH HOH . J 5 HOH B 21 521 2 HOH HOH . J 5 HOH B 22 522 30 HOH HOH . J 5 HOH B 23 523 23 HOH HOH . J 5 HOH B 24 524 10 HOH HOH . J 5 HOH B 25 525 55 HOH HOH . J 5 HOH B 26 526 73 HOH HOH . J 5 HOH B 27 527 15 HOH HOH . J 5 HOH B 28 528 20 HOH HOH . J 5 HOH B 29 529 89 HOH HOH . J 5 HOH B 30 530 65 HOH HOH . J 5 HOH B 31 531 84 HOH HOH . J 5 HOH B 32 532 81 HOH HOH . J 5 HOH B 33 533 62 HOH HOH . J 5 HOH B 34 534 41 HOH HOH . J 5 HOH B 35 535 67 HOH HOH . J 5 HOH B 36 536 93 HOH HOH . J 5 HOH B 37 537 101 HOH HOH . J 5 HOH B 38 538 94 HOH HOH . J 5 HOH B 39 539 83 HOH HOH . J 5 HOH B 40 540 98 HOH HOH . J 5 HOH B 41 541 80 HOH HOH . J 5 HOH B 42 542 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 3 -44.94 -6.768 26.696 0.76 64.03 ? PA NAD 402 B 1 HETATM 2 O O1A NAD . . . F 3 -44.436 -8.132 26.319 0.76 71.21 -1 O1A NAD 402 B 1 HETATM 3 O O2A NAD . . . F 3 -46.251 -6.251 26.201 0.76 64.51 ? O2A NAD 402 B 1 HETATM 4 O O5B NAD . . . F 3 -43.829 -5.657 26.24 0.76 61.2 ? O5B NAD 402 B 1 HETATM 5 C C5B NAD . . . F 3 -42.798 -5.341 27.145 0.76 53.94 ? C5B NAD 402 B 1 HETATM 6 C C4B NAD . . . F 3 -42.274 -3.954 26.839 0.76 53.94 ? C4B NAD 402 B 1 HETATM 7 O O4B NAD . . . F 3 -40.83 -3.955 26.874 0.76 54.64 ? O4B NAD 402 B 1 HETATM 8 C C3B NAD . . . F 3 -42.674 -3.431 25.454 0.76 51.39 ? C3B NAD 402 B 1 HETATM 9 O O3B NAD . . . F 3 -43.18 -2.136 25.65 0.76 47.8 ? O3B NAD 402 B 1 HETATM 10 C C2B NAD . . . F 3 -41.341 -3.374 24.7 0.76 52.63 ? C2B NAD 402 B 1 HETATM 11 O O2B NAD . . . F 3 -41.343 -2.414 23.676 0.76 49.82 ? O2B NAD 402 B 1 HETATM 12 C C1B NAD . . . F 3 -40.331 -3.16 25.828 0.76 51.54 ? C1B NAD 402 B 1 HETATM 13 N N9A NAD . . . F 3 -38.983 -3.519 25.407 0.76 51.67 ? N9A NAD 402 B 1 HETATM 14 C C8A NAD . . . F 3 -38.631 -4.573 24.62 0.76 54.22 ? C8A NAD 402 B 1 HETATM 15 N N7A NAD . . . F 3 -37.366 -4.64 24.368 0.76 53.01 ? N7A NAD 402 B 1 HETATM 16 C C5A NAD . . . F 3 -36.807 -3.563 24.997 0.76 51.56 ? C5A NAD 402 B 1 HETATM 17 C C6A NAD . . . F 3 -35.491 -3.052 25.12 0.76 53.72 ? C6A NAD 402 B 1 HETATM 18 N N6A NAD . . . F 3 -34.437 -3.62 24.555 0.76 57.79 ? N6A NAD 402 B 1 HETATM 19 N N1A NAD . . . F 3 -35.298 -1.934 25.841 0.76 53.32 ? N1A NAD 402 B 1 HETATM 20 C C2A NAD . . . F 3 -36.368 -1.369 26.405 0.76 51.85 ? C2A NAD 402 B 1 HETATM 21 N N3A NAD . . . F 3 -37.632 -1.751 26.366 0.76 51.6 ? N3A NAD 402 B 1 HETATM 22 C C4A NAD . . . F 3 -37.812 -2.853 25.647 0.76 50.46 ? C4A NAD 402 B 1 HETATM 23 O O3 NAD . . . F 3 -44.724 -6.665 28.336 0.76 66.85 ? O3 NAD 402 B 1 HETATM 24 P PN NAD . . . F 3 -45.761 -6.811 29.604 0.76 68.02 ? PN NAD 402 B 1 HETATM 25 O O1N NAD . . . F 3 -46.088 -8.275 29.827 0.76 72.72 -1 O1N NAD 402 B 1 HETATM 26 O O2N NAD . . . F 3 -46.877 -5.812 29.601 0.76 63.44 ? O2N NAD 402 B 1 HETATM 27 O O5D NAD . . . F 3 -44.751 -6.401 30.838 0.76 69.1 ? O5D NAD 402 B 1 HETATM 28 C C5D NAD . . . F 3 -43.355 -6.538 30.718 0.76 67.56 ? C5D NAD 402 B 1 HETATM 29 C C4D NAD . . . F 3 -42.839 -7.438 31.807 0.76 64.71 ? C4D NAD 402 B 1 HETATM 30 O O4D NAD . . . F 3 -43.561 -7.181 33.013 0.76 65.23 ? O4D NAD 402 B 1 HETATM 31 C C3D NAD . . . F 3 -43.034 -8.942 31.548 0.76 69.05 ? C3D NAD 402 B 1 HETATM 32 O O3D NAD . . . F 3 -41.913 -9.607 32.08 0.76 70.12 ? O3D NAD 402 B 1 HETATM 33 C C2D NAD . . . F 3 -44.289 -9.252 32.368 0.76 69.32 ? C2D NAD 402 B 1 HETATM 34 O O2D NAD . . . F 3 -44.477 -10.578 32.751 0.76 72.41 ? O2D NAD 402 B 1 HETATM 35 C C1D NAD . . . F 3 -43.903 -8.404 33.579 0.76 65.23 ? C1D NAD 402 B 1 HETATM 36 N N1N NAD . . . F 3 -44.972 -8.292 34.594 0.76 62.72 ? N1N NAD 402 B 1 HETATM 37 C C2N NAD . . . F 3 -44.657 -8.442 35.883 0.76 61.34 ? C2N NAD 402 B 1 HETATM 38 C C3N NAD . . . F 3 -45.599 -8.342 36.883 0.76 57.48 ? C3N NAD 402 B 1 HETATM 39 C C7N NAD . . . F 3 -45.251 -8.493 38.343 0.76 54.93 ? C7N NAD 402 B 1 HETATM 40 O O7N NAD . . . F 3 -44.072 -8.595 38.698 0.76 57.12 ? O7N NAD 402 B 1 HETATM 41 N N7N NAD . . . F 3 -46.29 -8.485 39.174 0.76 50.94 ? N7N NAD 402 B 1 HETATM 42 C C4N NAD . . . F 3 -46.921 -8.105 36.488 0.76 55.11 ? C4N NAD 402 B 1 HETATM 43 C C5N NAD . . . F 3 -47.238 -7.966 35.144 0.76 59.88 ? C5N NAD 402 B 1 HETATM 44 C C6N NAD . . . F 3 -46.243 -8.062 34.19 0.76 61.42 ? C6N NAD 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #