data_9ISB # _model_server_result.job_id 8VO8PeuJ2_4-DYLMhWLawg _model_server_result.datetime_utc '2025-07-03 08:32:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9isb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 9ISB # _exptl.entry_id 9ISB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ISB _cell.length_a 76.05 _cell.length_b 76.05 _cell.length_c 199.13 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ISB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 9ISB _atom_sites.fract_transf_matrix[1][1] 0.013149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 701 763 ADP ADP . D 3 ATP B 1 701 763 ATP ATP . E 4 HOH A 1 801 67 HOH HOH . E 4 HOH A 2 802 30 HOH HOH . E 4 HOH A 3 803 6 HOH HOH . E 4 HOH A 4 804 43 HOH HOH . E 4 HOH A 5 805 77 HOH HOH . E 4 HOH A 6 806 1 HOH HOH . E 4 HOH A 7 807 54 HOH HOH . E 4 HOH A 8 808 65 HOH HOH . E 4 HOH A 9 809 50 HOH HOH . E 4 HOH A 10 810 78 HOH HOH . E 4 HOH A 11 811 76 HOH HOH . E 4 HOH A 12 812 16 HOH HOH . E 4 HOH A 13 813 37 HOH HOH . E 4 HOH A 14 814 28 HOH HOH . E 4 HOH A 15 815 55 HOH HOH . E 4 HOH A 16 816 63 HOH HOH . E 4 HOH A 17 817 5 HOH HOH . E 4 HOH A 18 818 53 HOH HOH . E 4 HOH A 19 819 39 HOH HOH . E 4 HOH A 20 820 31 HOH HOH . E 4 HOH A 21 821 44 HOH HOH . E 4 HOH A 22 822 33 HOH HOH . E 4 HOH A 23 823 73 HOH HOH . E 4 HOH A 24 824 81 HOH HOH . E 4 HOH A 25 825 21 HOH HOH . E 4 HOH A 26 826 69 HOH HOH . E 4 HOH A 27 827 80 HOH HOH . F 4 HOH B 1 801 45 HOH HOH . F 4 HOH B 2 802 40 HOH HOH . F 4 HOH B 3 803 9 HOH HOH . F 4 HOH B 4 804 57 HOH HOH . F 4 HOH B 5 805 74 HOH HOH . F 4 HOH B 6 806 62 HOH HOH . F 4 HOH B 7 807 64 HOH HOH . F 4 HOH B 8 808 27 HOH HOH . F 4 HOH B 9 809 83 HOH HOH . F 4 HOH B 10 810 24 HOH HOH . F 4 HOH B 11 811 58 HOH HOH . F 4 HOH B 12 812 46 HOH HOH . F 4 HOH B 13 813 17 HOH HOH . F 4 HOH B 14 814 11 HOH HOH . F 4 HOH B 15 815 15 HOH HOH . F 4 HOH B 16 816 4 HOH HOH . F 4 HOH B 17 817 22 HOH HOH . F 4 HOH B 18 818 68 HOH HOH . F 4 HOH B 19 819 48 HOH HOH . F 4 HOH B 20 820 35 HOH HOH . F 4 HOH B 21 821 36 HOH HOH . F 4 HOH B 22 822 29 HOH HOH . F 4 HOH B 23 823 3 HOH HOH . F 4 HOH B 24 824 7 HOH HOH . F 4 HOH B 25 825 18 HOH HOH . F 4 HOH B 26 826 41 HOH HOH . F 4 HOH B 27 827 47 HOH HOH . F 4 HOH B 28 828 26 HOH HOH . F 4 HOH B 29 829 10 HOH HOH . F 4 HOH B 30 830 8 HOH HOH . F 4 HOH B 31 831 82 HOH HOH . F 4 HOH B 32 832 32 HOH HOH . F 4 HOH B 33 833 19 HOH HOH . F 4 HOH B 34 834 52 HOH HOH . F 4 HOH B 35 835 25 HOH HOH . F 4 HOH B 36 836 20 HOH HOH . F 4 HOH B 37 837 49 HOH HOH . F 4 HOH B 38 838 13 HOH HOH . F 4 HOH B 39 839 2 HOH HOH . F 4 HOH B 40 840 66 HOH HOH . F 4 HOH B 41 841 34 HOH HOH . F 4 HOH B 42 842 51 HOH HOH . F 4 HOH B 43 843 75 HOH HOH . F 4 HOH B 44 844 14 HOH HOH . F 4 HOH B 45 845 12 HOH HOH . F 4 HOH B 46 846 84 HOH HOH . F 4 HOH B 47 847 23 HOH HOH . F 4 HOH B 48 848 71 HOH HOH . F 4 HOH B 49 849 70 HOH HOH . F 4 HOH B 50 850 56 HOH HOH . F 4 HOH B 51 851 42 HOH HOH . F 4 HOH B 52 852 79 HOH HOH . F 4 HOH B 53 853 60 HOH HOH . F 4 HOH B 54 854 72 HOH HOH . F 4 HOH B 55 855 38 HOH HOH . F 4 HOH B 56 856 61 HOH HOH . F 4 HOH B 57 857 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 0.54 -12.433 -11.219 1 129.47 ? PB ADP 701 A 1 HETATM 2 O O1B ADP . . . C 2 0.695 -11.449 -10.076 1 123.38 ? O1B ADP 701 A 1 HETATM 3 O O2B ADP . . . C 2 -0.507 -13.503 -10.997 1 121.72 ? O2B ADP 701 A 1 HETATM 4 O O3B ADP . . . C 2 0.479 -11.784 -12.585 1 118.85 ? O3B ADP 701 A 1 HETATM 5 P PA ADP . . . C 2 2.399 -14.27 -10.084 1 113.82 ? PA ADP 701 A 1 HETATM 6 O O1A ADP . . . C 2 2.813 -13.487 -8.857 1 107.51 ? O1A ADP 701 A 1 HETATM 7 O O2A ADP . . . C 2 1.369 -15.373 -9.98 1 103.59 ? O2A ADP 701 A 1 HETATM 8 O O3A ADP . . . C 2 1.934 -13.249 -11.248 1 119.79 ? O3A ADP 701 A 1 HETATM 9 O O5' ADP . . . C 2 3.722 -14.875 -10.77 1 99.69 ? O5' ADP 701 A 1 HETATM 10 C C5' ADP . . . C 2 3.618 -15.5 -12.047 1 90.29 ? C5' ADP 701 A 1 HETATM 11 C C4' ADP . . . C 2 4.968 -16.081 -12.442 1 80.56 ? C4' ADP 701 A 1 HETATM 12 O O4' ADP . . . C 2 5.178 -17.309 -11.74 1 77.82 ? O4' ADP 701 A 1 HETATM 13 C C3' ADP . . . C 2 5.007 -16.394 -13.925 1 74.62 ? C3' ADP 701 A 1 HETATM 14 O O3' ADP . . . C 2 6.306 -16.069 -14.433 1 76.73 ? O3' ADP 701 A 1 HETATM 15 C C2' ADP . . . C 2 4.814 -17.889 -14 1 68.91 ? C2' ADP 701 A 1 HETATM 16 O O2' ADP . . . C 2 5.502 -18.411 -15.145 1 65.91 ? O2' ADP 701 A 1 HETATM 17 C C1' ADP . . . C 2 5.372 -18.387 -12.668 1 69.78 ? C1' ADP 701 A 1 HETATM 18 N N9 ADP . . . C 2 4.669 -19.618 -12.196 1 63.15 ? N9 ADP 701 A 1 HETATM 19 C C8 ADP . . . C 2 3.548 -19.647 -11.442 1 57.64 ? C8 ADP 701 A 1 HETATM 20 N N7 ADP . . . C 2 3.172 -20.926 -11.184 1 56.71 ? N7 ADP 701 A 1 HETATM 21 C C5 ADP . . . C 2 4.069 -21.741 -11.776 1 54.87 ? C5 ADP 701 A 1 HETATM 22 C C6 ADP . . . C 2 4.267 -23.204 -11.901 1 48.03 ? C6 ADP 701 A 1 HETATM 23 N N6 ADP . . . C 2 3.398 -24.067 -11.324 1 44.98 ? N6 ADP 701 A 1 HETATM 24 N N1 ADP . . . C 2 5.341 -23.641 -12.611 1 50.35 ? N1 ADP 701 A 1 HETATM 25 C C2 ADP . . . C 2 6.211 -22.79 -13.195 1 52.85 ? C2 ADP 701 A 1 HETATM 26 N N3 ADP . . . C 2 6.091 -21.454 -13.123 1 51.24 ? N3 ADP 701 A 1 HETATM 27 C C4 ADP . . . C 2 5.059 -20.877 -12.444 1 59.04 ? C4 ADP 701 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 27 #