data_9ISB # _model_server_result.job_id jOEP8lBrX8z6a0aJvjmE6w _model_server_result.datetime_utc '2025-07-05 09:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9isb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 9ISB # _exptl.entry_id 9ISB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ISB _cell.length_a 76.05 _cell.length_b 76.05 _cell.length_c 199.13 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ISB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 9ISB _atom_sites.fract_transf_matrix[1][1] 0.013149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 701 763 ADP ADP . D 3 ATP B 1 701 763 ATP ATP . E 4 HOH A 1 801 67 HOH HOH . E 4 HOH A 2 802 30 HOH HOH . E 4 HOH A 3 803 6 HOH HOH . E 4 HOH A 4 804 43 HOH HOH . E 4 HOH A 5 805 77 HOH HOH . E 4 HOH A 6 806 1 HOH HOH . E 4 HOH A 7 807 54 HOH HOH . E 4 HOH A 8 808 65 HOH HOH . E 4 HOH A 9 809 50 HOH HOH . E 4 HOH A 10 810 78 HOH HOH . E 4 HOH A 11 811 76 HOH HOH . E 4 HOH A 12 812 16 HOH HOH . E 4 HOH A 13 813 37 HOH HOH . E 4 HOH A 14 814 28 HOH HOH . E 4 HOH A 15 815 55 HOH HOH . E 4 HOH A 16 816 63 HOH HOH . E 4 HOH A 17 817 5 HOH HOH . E 4 HOH A 18 818 53 HOH HOH . E 4 HOH A 19 819 39 HOH HOH . E 4 HOH A 20 820 31 HOH HOH . E 4 HOH A 21 821 44 HOH HOH . E 4 HOH A 22 822 33 HOH HOH . E 4 HOH A 23 823 73 HOH HOH . E 4 HOH A 24 824 81 HOH HOH . E 4 HOH A 25 825 21 HOH HOH . E 4 HOH A 26 826 69 HOH HOH . E 4 HOH A 27 827 80 HOH HOH . F 4 HOH B 1 801 45 HOH HOH . F 4 HOH B 2 802 40 HOH HOH . F 4 HOH B 3 803 9 HOH HOH . F 4 HOH B 4 804 57 HOH HOH . F 4 HOH B 5 805 74 HOH HOH . F 4 HOH B 6 806 62 HOH HOH . F 4 HOH B 7 807 64 HOH HOH . F 4 HOH B 8 808 27 HOH HOH . F 4 HOH B 9 809 83 HOH HOH . F 4 HOH B 10 810 24 HOH HOH . F 4 HOH B 11 811 58 HOH HOH . F 4 HOH B 12 812 46 HOH HOH . F 4 HOH B 13 813 17 HOH HOH . F 4 HOH B 14 814 11 HOH HOH . F 4 HOH B 15 815 15 HOH HOH . F 4 HOH B 16 816 4 HOH HOH . F 4 HOH B 17 817 22 HOH HOH . F 4 HOH B 18 818 68 HOH HOH . F 4 HOH B 19 819 48 HOH HOH . F 4 HOH B 20 820 35 HOH HOH . F 4 HOH B 21 821 36 HOH HOH . F 4 HOH B 22 822 29 HOH HOH . F 4 HOH B 23 823 3 HOH HOH . F 4 HOH B 24 824 7 HOH HOH . F 4 HOH B 25 825 18 HOH HOH . F 4 HOH B 26 826 41 HOH HOH . F 4 HOH B 27 827 47 HOH HOH . F 4 HOH B 28 828 26 HOH HOH . F 4 HOH B 29 829 10 HOH HOH . F 4 HOH B 30 830 8 HOH HOH . F 4 HOH B 31 831 82 HOH HOH . F 4 HOH B 32 832 32 HOH HOH . F 4 HOH B 33 833 19 HOH HOH . F 4 HOH B 34 834 52 HOH HOH . F 4 HOH B 35 835 25 HOH HOH . F 4 HOH B 36 836 20 HOH HOH . F 4 HOH B 37 837 49 HOH HOH . F 4 HOH B 38 838 13 HOH HOH . F 4 HOH B 39 839 2 HOH HOH . F 4 HOH B 40 840 66 HOH HOH . F 4 HOH B 41 841 34 HOH HOH . F 4 HOH B 42 842 51 HOH HOH . F 4 HOH B 43 843 75 HOH HOH . F 4 HOH B 44 844 14 HOH HOH . F 4 HOH B 45 845 12 HOH HOH . F 4 HOH B 46 846 84 HOH HOH . F 4 HOH B 47 847 23 HOH HOH . F 4 HOH B 48 848 71 HOH HOH . F 4 HOH B 49 849 70 HOH HOH . F 4 HOH B 50 850 56 HOH HOH . F 4 HOH B 51 851 42 HOH HOH . F 4 HOH B 52 852 79 HOH HOH . F 4 HOH B 53 853 60 HOH HOH . F 4 HOH B 54 854 72 HOH HOH . F 4 HOH B 55 855 38 HOH HOH . F 4 HOH B 56 856 61 HOH HOH . F 4 HOH B 57 857 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 -25.706 -39.126 16.116 1 124.16 ? PG ATP 701 B 1 HETATM 2 O O1G ATP . . . D 3 -24.889 -39.344 17.351 1 115.55 ? O1G ATP 701 B 1 HETATM 3 O O2G ATP . . . D 3 -25.025 -39.633 14.828 1 111.73 ? O2G ATP 701 B 1 HETATM 4 O O3G ATP . . . D 3 -27.12 -39.711 16.197 1 119.73 ? O3G ATP 701 B 1 HETATM 5 P PB ATP . . . D 3 -25.169 -36.301 15.257 1 124.62 ? PB ATP 701 B 1 HETATM 6 O O1B ATP . . . D 3 -25.362 -36.175 13.793 1 113.59 ? O1B ATP 701 B 1 HETATM 7 O O2B ATP . . . D 3 -25.576 -35.084 16.095 1 116.94 ? O2B ATP 701 B 1 HETATM 8 O O3B ATP . . . D 3 -25.937 -37.561 15.857 1 124.01 ? O3B ATP 701 B 1 HETATM 9 P PA ATP . . . D 3 -22.675 -36.534 16.886 1 115.27 ? PA ATP 701 B 1 HETATM 10 O O1A ATP . . . D 3 -21.863 -37.757 17.063 1 108.83 ? O1A ATP 701 B 1 HETATM 11 O O2A ATP . . . D 3 -23.517 -36.104 18.096 1 106.51 ? O2A ATP 701 B 1 HETATM 12 O O3A ATP . . . D 3 -23.658 -36.663 15.612 1 121.12 ? O3A ATP 701 B 1 HETATM 13 O O5' ATP . . . D 3 -21.767 -35.332 16.416 1 93.69 ? O5' ATP 701 B 1 HETATM 14 C C5' ATP . . . D 3 -21.413 -35.177 15.026 1 90.94 ? C5' ATP 701 B 1 HETATM 15 C C4' ATP . . . D 3 -21.168 -33.725 14.728 1 80.41 ? C4' ATP 701 B 1 HETATM 16 O O4' ATP . . . D 3 -19.868 -33.356 15.241 1 71.65 ? O4' ATP 701 B 1 HETATM 17 C C3' ATP . . . D 3 -21.118 -33.39 13.241 1 70.67 ? C3' ATP 701 B 1 HETATM 18 O O3' ATP . . . D 3 -21.421 -32.015 13.028 1 65.5 ? O3' ATP 701 B 1 HETATM 19 C C2' ATP . . . D 3 -19.656 -33.681 12.903 1 67.02 ? C2' ATP 701 B 1 HETATM 20 O O2' ATP . . . D 3 -19.219 -33.002 11.724 1 61.79 ? O2' ATP 701 B 1 HETATM 21 C C1' ATP . . . D 3 -18.974 -33.138 14.162 1 65.25 ? C1' ATP 701 B 1 HETATM 22 N N9 ATP . . . D 3 -17.695 -33.758 14.478 1 61.34 ? N9 ATP 701 B 1 HETATM 23 C C8 ATP . . . D 3 -17.463 -34.973 15.071 1 58.05 ? C8 ATP 701 B 1 HETATM 24 N N7 ATP . . . D 3 -16.192 -35.259 15.224 1 51.81 ? N7 ATP 701 B 1 HETATM 25 C C5 ATP . . . D 3 -15.543 -34.15 14.702 1 48.82 ? C5 ATP 701 B 1 HETATM 26 C C6 ATP . . . D 3 -14.181 -33.824 14.563 1 42.23 ? C6 ATP 701 B 1 HETATM 27 N N6 ATP . . . D 3 -13.179 -34.621 14.957 1 40.29 ? N6 ATP 701 B 1 HETATM 28 N N1 ATP . . . D 3 -13.875 -32.632 13.991 1 46.43 ? N1 ATP 701 B 1 HETATM 29 C C2 ATP . . . D 3 -14.868 -31.831 13.591 1 46.63 ? C2 ATP 701 B 1 HETATM 30 N N3 ATP . . . D 3 -16.186 -32.034 13.67 1 48.14 ? N3 ATP 701 B 1 HETATM 31 C C4 ATP . . . D 3 -16.458 -33.218 14.236 1 52.56 ? C4 ATP 701 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #