data_9ISR # _model_server_result.job_id A2V2mkfKrPheyT070loPYw _model_server_result.datetime_utc '2025-01-09 18:23:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9isr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 9ISR # _exptl.entry_id 9ISR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ISR _cell.length_a 65.075 _cell.length_b 201.469 _cell.length_c 240.021 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ISR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 291 n n PA O2A NAP sing 292 n n PA O5B NAP sing 293 n n PA O3 NAP sing 294 n n O2A HOA2 NAP sing 295 n n O5B C5B NAP sing 296 n n C5B C4B NAP sing 297 n n C5B H51A NAP sing 298 n n C5B H52A NAP sing 299 n n C4B O4B NAP sing 300 n n C4B C3B NAP sing 301 n n C4B H4B NAP sing 302 n n O4B C1B NAP sing 303 n n C3B O3B NAP sing 304 n n C3B C2B NAP sing 305 n n C3B H3B NAP sing 306 n n O3B HO3A NAP sing 307 n n C2B O2B NAP sing 308 n n C2B C1B NAP sing 309 n n C2B H2B NAP sing 310 n n O2B P2B NAP sing 311 n n C1B N9A NAP sing 312 n n C1B H1B NAP sing 313 n n N9A C8A NAP sing 314 n y N9A C4A NAP sing 315 n y C8A N7A NAP doub 316 n y C8A H8A NAP sing 317 n n N7A C5A NAP sing 318 n y C5A C6A NAP sing 319 n y C5A C4A NAP doub 320 n y C6A N6A NAP sing 321 n n C6A N1A NAP doub 322 n y N6A H61A NAP sing 323 n n N6A H62A NAP sing 324 n n N1A C2A NAP sing 325 n y C2A N3A NAP doub 326 n y C2A H2A NAP sing 327 n n N3A C4A NAP sing 328 n y O3 PN NAP sing 329 n n PN O1N NAP doub 330 n n PN O2N NAP sing 331 n n PN O5D NAP sing 332 n n O5D C5D NAP sing 333 n n C5D C4D NAP sing 334 n n C5D H51N NAP sing 335 n n C5D H52N NAP sing 336 n n C4D O4D NAP sing 337 n n C4D C3D NAP sing 338 n n C4D H4D NAP sing 339 n n O4D C1D NAP sing 340 n n C3D O3D NAP sing 341 n n C3D C2D NAP sing 342 n n C3D H3D NAP sing 343 n n O3D HO3N NAP sing 344 n n C2D O2D NAP sing 345 n n C2D C1D NAP sing 346 n n C2D H2D NAP sing 347 n n O2D HO2N NAP sing 348 n n C1D N1N NAP sing 349 n n C1D H1D NAP sing 350 n n N1N C2N NAP sing 351 n y N1N C6N NAP doub 352 n y C2N C3N NAP doub 353 n y C2N H2N NAP sing 354 n n C3N C7N NAP sing 355 n n C3N C4N NAP sing 356 n y C7N O7N NAP doub 357 n n C7N N7N NAP sing 358 n n N7N H71N NAP sing 359 n n N7N H72N NAP sing 360 n n C4N C5N NAP doub 361 n y C4N H4N NAP sing 362 n n C5N C6N NAP sing 363 n y C5N H5N NAP sing 364 n n C6N H6N NAP sing 365 n n P2B O1X NAP doub 366 n n P2B O2X NAP sing 367 n n P2B O3X NAP sing 368 n n O2X HOP2 NAP sing 369 n n O3X HOP3 NAP sing 370 n n # _atom_sites.entry_id 9ISR _atom_sites.fract_transf_matrix[1][1] 0.015367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 A1L24 A 1 401 301 A1L24 LIG . F 3 NAP A 1 402 401 NAP NAP . G 2 A1L24 B 1 401 301 A1L24 LIG . H 3 NAP B 1 402 401 NAP NAP . I 2 A1L24 C 1 401 301 A1L24 LIG . J 3 NAP C 1 402 401 NAP NAP . K 2 A1L24 D 1 401 301 A1L24 LIG . L 3 NAP D 1 402 401 NAP NAP . M 4 HOH A 1 501 24 HOH HOH . M 4 HOH A 2 502 18 HOH HOH . M 4 HOH A 3 503 115 HOH HOH . M 4 HOH A 4 504 63 HOH HOH . M 4 HOH A 5 505 92 HOH HOH . M 4 HOH A 6 506 21 HOH HOH . M 4 HOH A 7 507 114 HOH HOH . M 4 HOH A 8 508 19 HOH HOH . M 4 HOH A 9 509 98 HOH HOH . M 4 HOH A 10 510 38 HOH HOH . M 4 HOH A 11 511 41 HOH HOH . M 4 HOH A 12 512 5 HOH HOH . M 4 HOH A 13 513 27 HOH HOH . M 4 HOH A 14 514 47 HOH HOH . M 4 HOH A 15 515 6 HOH HOH . M 4 HOH A 16 516 40 HOH HOH . M 4 HOH A 17 517 26 HOH HOH . M 4 HOH A 18 518 61 HOH HOH . M 4 HOH A 19 519 85 HOH HOH . M 4 HOH A 20 520 20 HOH HOH . M 4 HOH A 21 521 7 HOH HOH . M 4 HOH A 22 522 94 HOH HOH . M 4 HOH A 23 523 105 HOH HOH . M 4 HOH A 24 524 12 HOH HOH . M 4 HOH A 25 525 74 HOH HOH . M 4 HOH A 26 526 120 HOH HOH . M 4 HOH A 27 527 4 HOH HOH . M 4 HOH A 28 528 117 HOH HOH . M 4 HOH A 29 529 133 HOH HOH . M 4 HOH A 30 530 55 HOH HOH . M 4 HOH A 31 531 36 HOH HOH . M 4 HOH A 32 532 42 HOH HOH . M 4 HOH A 33 533 143 HOH HOH . M 4 HOH A 34 534 139 HOH HOH . M 4 HOH A 35 535 138 HOH HOH . M 4 HOH A 36 536 58 HOH HOH . M 4 HOH A 37 537 127 HOH HOH . M 4 HOH A 38 538 135 HOH HOH . M 4 HOH A 39 539 37 HOH HOH . M 4 HOH A 40 540 134 HOH HOH . N 4 HOH B 1 501 13 HOH HOH . N 4 HOH B 2 502 93 HOH HOH . N 4 HOH B 3 503 49 HOH HOH . N 4 HOH B 4 504 34 HOH HOH . N 4 HOH B 5 505 65 HOH HOH . N 4 HOH B 6 506 32 HOH HOH . N 4 HOH B 7 507 86 HOH HOH . N 4 HOH B 8 508 69 HOH HOH . N 4 HOH B 9 509 56 HOH HOH . N 4 HOH B 10 510 44 HOH HOH . N 4 HOH B 11 511 30 HOH HOH . N 4 HOH B 12 512 25 HOH HOH . N 4 HOH B 13 513 122 HOH HOH . N 4 HOH B 14 514 87 HOH HOH . N 4 HOH B 15 515 9 HOH HOH . N 4 HOH B 16 516 71 HOH HOH . N 4 HOH B 17 517 22 HOH HOH . N 4 HOH B 18 518 35 HOH HOH . N 4 HOH B 19 519 53 HOH HOH . N 4 HOH B 20 520 43 HOH HOH . N 4 HOH B 21 521 11 HOH HOH . N 4 HOH B 22 522 46 HOH HOH . N 4 HOH B 23 523 51 HOH HOH . N 4 HOH B 24 524 121 HOH HOH . N 4 HOH B 25 525 50 HOH HOH . N 4 HOH B 26 526 119 HOH HOH . N 4 HOH B 27 527 3 HOH HOH . N 4 HOH B 28 528 1 HOH HOH . N 4 HOH B 29 529 100 HOH HOH . N 4 HOH B 30 530 128 HOH HOH . N 4 HOH B 31 531 73 HOH HOH . N 4 HOH B 32 532 28 HOH HOH . N 4 HOH B 33 533 140 HOH HOH . N 4 HOH B 34 534 81 HOH HOH . N 4 HOH B 35 535 80 HOH HOH . N 4 HOH B 36 536 66 HOH HOH . N 4 HOH B 37 537 106 HOH HOH . N 4 HOH B 38 538 101 HOH HOH . N 4 HOH B 39 539 146 HOH HOH . N 4 HOH B 40 540 89 HOH HOH . N 4 HOH B 41 541 84 HOH HOH . N 4 HOH B 42 542 129 HOH HOH . N 4 HOH B 43 543 124 HOH HOH . N 4 HOH B 44 544 144 HOH HOH . O 4 HOH C 1 501 112 HOH HOH . O 4 HOH C 2 502 16 HOH HOH . O 4 HOH C 3 503 15 HOH HOH . O 4 HOH C 4 504 33 HOH HOH . O 4 HOH C 5 505 76 HOH HOH . O 4 HOH C 6 506 17 HOH HOH . O 4 HOH C 7 507 29 HOH HOH . O 4 HOH C 8 508 91 HOH HOH . O 4 HOH C 9 509 2 HOH HOH . O 4 HOH C 10 510 82 HOH HOH . O 4 HOH C 11 511 10 HOH HOH . O 4 HOH C 12 512 14 HOH HOH . O 4 HOH C 13 513 102 HOH HOH . O 4 HOH C 14 514 141 HOH HOH . O 4 HOH C 15 515 126 HOH HOH . O 4 HOH C 16 516 83 HOH HOH . O 4 HOH C 17 517 142 HOH HOH . O 4 HOH C 18 518 59 HOH HOH . O 4 HOH C 19 519 67 HOH HOH . O 4 HOH C 20 520 78 HOH HOH . O 4 HOH C 21 521 54 HOH HOH . O 4 HOH C 22 522 31 HOH HOH . O 4 HOH C 23 523 8 HOH HOH . O 4 HOH C 24 524 131 HOH HOH . O 4 HOH C 25 525 97 HOH HOH . O 4 HOH C 26 526 88 HOH HOH . O 4 HOH C 27 527 118 HOH HOH . O 4 HOH C 28 528 90 HOH HOH . O 4 HOH C 29 529 125 HOH HOH . O 4 HOH C 30 530 57 HOH HOH . O 4 HOH C 31 531 113 HOH HOH . O 4 HOH C 32 532 110 HOH HOH . O 4 HOH C 33 533 130 HOH HOH . O 4 HOH C 34 534 96 HOH HOH . O 4 HOH C 35 535 62 HOH HOH . O 4 HOH C 36 536 137 HOH HOH . O 4 HOH C 37 537 108 HOH HOH . O 4 HOH C 38 538 123 HOH HOH . O 4 HOH C 39 539 45 HOH HOH . O 4 HOH C 40 540 99 HOH HOH . P 4 HOH D 1 501 75 HOH HOH . P 4 HOH D 2 502 52 HOH HOH . P 4 HOH D 3 503 48 HOH HOH . P 4 HOH D 4 504 68 HOH HOH . P 4 HOH D 5 505 64 HOH HOH . P 4 HOH D 6 506 79 HOH HOH . P 4 HOH D 7 507 60 HOH HOH . P 4 HOH D 8 508 23 HOH HOH . P 4 HOH D 9 509 136 HOH HOH . P 4 HOH D 10 510 132 HOH HOH . P 4 HOH D 11 511 95 HOH HOH . P 4 HOH D 12 512 107 HOH HOH . P 4 HOH D 13 513 77 HOH HOH . P 4 HOH D 14 514 145 HOH HOH . P 4 HOH D 15 515 103 HOH HOH . P 4 HOH D 16 516 109 HOH HOH . P 4 HOH D 17 517 104 HOH HOH . P 4 HOH D 18 518 111 HOH HOH . P 4 HOH D 19 519 116 HOH HOH . P 4 HOH D 20 520 72 HOH HOH . P 4 HOH D 21 521 39 HOH HOH . P 4 HOH D 22 522 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . H 3 10.971 -7.55 38.682 0.82 51.22 ? PA NAP 402 B 1 HETATM 2 O O1A NAP . . . H 3 10.572 -6.115 38.604 0.82 49.57 ? O1A NAP 402 B 1 HETATM 3 O O2A NAP . . . H 3 10.021 -8.581 38.174 0.82 49.52 ? O2A NAP 402 B 1 HETATM 4 O O5B NAP . . . H 3 12.387 -7.746 37.967 0.82 40.43 ? O5B NAP 402 B 1 HETATM 5 C C5B NAP . . . H 3 12.654 -8.986 37.28 0.82 29.33 ? C5B NAP 402 B 1 HETATM 6 C C4B NAP . . . H 3 13.831 -8.78 36.362 0.82 31.66 ? C4B NAP 402 B 1 HETATM 7 O O4B NAP . . . H 3 14.257 -10.062 35.839 0.82 30.75 ? O4B NAP 402 B 1 HETATM 8 C C3B NAP . . . H 3 13.583 -7.879 35.144 0.82 29.2 ? C3B NAP 402 B 1 HETATM 9 O O3B NAP . . . H 3 14.685 -7.012 34.914 0.82 30.31 ? O3B NAP 402 B 1 HETATM 10 C C2B NAP . . . H 3 13.388 -8.871 34.005 0.82 21.52 ? C2B NAP 402 B 1 HETATM 11 O O2B NAP . . . H 3 13.87 -8.33 32.779 0.82 28.42 ? O2B NAP 402 B 1 HETATM 12 C C1B NAP . . . H 3 14.291 -10.019 34.435 0.82 29.3 ? C1B NAP 402 B 1 HETATM 13 N N9A NAP . . . H 3 13.845 -11.309 33.932 0.82 28.85 ? N9A NAP 402 B 1 HETATM 14 C C8A NAP . . . H 3 12.597 -11.857 34.073 0.82 27.83 ? C8A NAP 402 B 1 HETATM 15 N N7A NAP . . . H 3 12.479 -13.028 33.504 0.82 26.89 ? N7A NAP 402 B 1 HETATM 16 C C5A NAP . . . H 3 13.727 -13.267 32.95 0.82 27.07 ? C5A NAP 402 B 1 HETATM 17 C C6A NAP . . . H 3 14.241 -14.346 32.21 0.82 29.55 ? C6A NAP 402 B 1 HETATM 18 N N6A NAP . . . H 3 13.532 -15.422 31.886 0.82 31.96 ? N6A NAP 402 B 1 HETATM 19 N N1A NAP . . . H 3 15.529 -14.266 31.805 0.82 30.96 ? N1A NAP 402 B 1 HETATM 20 C C2A NAP . . . H 3 16.237 -13.18 32.136 0.82 27.47 ? C2A NAP 402 B 1 HETATM 21 N N3A NAP . . . H 3 15.86 -12.108 32.823 0.82 30.83 ? N3A NAP 402 B 1 HETATM 22 C C4A NAP . . . H 3 14.579 -12.213 33.207 0.82 29.32 ? C4A NAP 402 B 1 HETATM 23 O O3 NAP . . . H 3 11.358 -7.886 40.2 0.82 60.59 ? O3 NAP 402 B 1 HETATM 24 P PN NAP . . . H 3 12.627 -7.59 41.138 0.82 61.47 ? PN NAP 402 B 1 HETATM 25 O O1N NAP . . . H 3 12.304 -6.447 42.041 0.82 43.04 ? O1N NAP 402 B 1 HETATM 26 O O2N NAP . . . H 3 13.868 -7.511 40.313 0.82 54.61 ? O2N NAP 402 B 1 HETATM 27 O O5D NAP . . . H 3 12.662 -8.945 41.985 0.82 64.59 ? O5D NAP 402 B 1 HETATM 28 C C5D NAP . . . H 3 13.206 -10.128 41.353 0.82 53.48 ? C5D NAP 402 B 1 HETATM 29 C C4D NAP . . . H 3 13.528 -11.143 42.421 0.82 49.66 ? C4D NAP 402 B 1 HETATM 30 O O4D NAP . . . H 3 14.435 -10.539 43.368 0.82 51.89 ? O4D NAP 402 B 1 HETATM 31 C C3D NAP . . . H 3 12.324 -11.648 43.232 0.82 51.36 ? C3D NAP 402 B 1 HETATM 32 O O3D NAP . . . H 3 12.393 -13.049 43.469 0.82 47.57 ? O3D NAP 402 B 1 HETATM 33 C C2D NAP . . . H 3 12.429 -10.837 44.528 0.82 54.81 ? C2D NAP 402 B 1 HETATM 34 O O2D NAP . . . H 3 11.854 -11.509 45.636 0.82 53.65 ? O2D NAP 402 B 1 HETATM 35 C C1D NAP . . . H 3 13.937 -10.704 44.687 0.82 53.31 ? C1D NAP 402 B 1 HETATM 36 N N1N NAP . . . H 3 14.329 -9.521 45.508 0.82 53.77 ? N1N NAP 402 B 1 HETATM 37 C C2N NAP . . . H 3 15.498 -9.532 46.209 0.82 49.78 ? C2N NAP 402 B 1 HETATM 38 C C3N NAP . . . H 3 15.321 -9.088 47.506 0.82 47.26 ? C3N NAP 402 B 1 HETATM 39 C C7N NAP . . . H 3 15.885 -9.93 48.62 0.82 50.98 ? C7N NAP 402 B 1 HETATM 40 O O7N NAP . . . H 3 16.093 -11.123 48.415 0.82 51.42 ? O7N NAP 402 B 1 HETATM 41 N N7N NAP . . . H 3 16.124 -9.343 49.783 0.82 40.86 ? N7N NAP 402 B 1 HETATM 42 C C4N NAP . . . H 3 14.57 -7.94 47.693 0.82 45.8 ? C4N NAP 402 B 1 HETATM 43 C C5N NAP . . . H 3 13.637 -7.618 46.733 0.82 45.37 ? C5N NAP 402 B 1 HETATM 44 C C6N NAP . . . H 3 13.508 -8.453 45.644 0.82 56.48 ? C6N NAP 402 B 1 HETATM 45 P P2B NAP . . . H 3 12.822 -7.315 32.103 0.82 22.6 ? P2B NAP 402 B 1 HETATM 46 O O1X NAP . . . H 3 13.059 -7.406 30.618 0.82 25.04 ? O1X NAP 402 B 1 HETATM 47 O O2X NAP . . . H 3 11.441 -7.78 32.488 0.82 29.86 ? O2X NAP 402 B 1 HETATM 48 O O3X NAP . . . H 3 13.13 -5.938 32.641 0.82 21.92 ? O3X NAP 402 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 48 #