data_9IT3 # _model_server_result.job_id ka-k7qRTpGcts_bU7AJn8g _model_server_result.datetime_utc '2025-01-25 11:07:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9it3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9IT3 # _exptl.entry_id 9IT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.821 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]-3-chloranyl-phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9IT3 _cell.length_a 115.624 _cell.length_b 115.624 _cell.length_c 113.27 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C17 H18 Cl N7 O7' _chem_comp.formula_weight 467.821 _chem_comp.id A1L23 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]-3-chloranyl-phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C04 A1L23 sing 1 n n N03 C04 A1L23 sing 2 n n N03 C02 A1L23 doub 3 n n C04 C05 A1L23 doub 4 n n N31 C02 A1L23 sing 5 n n C02 N01 A1L23 sing 6 n n C05 N07 A1L23 sing 7 n n C05 C06 A1L23 sing 8 n n N07 C08 A1L23 sing 9 n n N01 C06 A1L23 sing 10 n n CL32 C17 A1L23 sing 11 n n C06 O30 A1L23 doub 12 n n C08 N09 A1L23 sing 13 n n C08 O12 A1L23 doub 14 n n N09 C10 A1L23 sing 15 n n C17 C10 A1L23 sing 16 n y C17 C16 A1L23 doub 17 n y C10 C13 A1L23 doub 18 n y C16 C15 A1L23 sing 19 n y O29 C27 A1L23 doub 20 n n C13 C14 A1L23 sing 21 n y O28 C27 A1L23 sing 22 n n C27 C26 A1L23 sing 23 n n C15 C14 A1L23 doub 24 n y C15 C18 A1L23 sing 25 n n N20 C18 A1L23 sing 26 n n N20 C21 A1L23 sing 27 n n C26 C23 A1L23 sing 28 n n C18 O19 A1L23 doub 29 n n O24 C22 A1L23 doub 30 n n C23 C21 A1L23 sing 31 n n C21 C22 A1L23 sing 32 n n C22 O25 A1L23 sing 33 n n C13 H1 A1L23 sing 34 n n C21 H2 A1L23 sing 35 n n C26 H3 A1L23 sing 36 n n C26 H4 A1L23 sing 37 n n C14 H6 A1L23 sing 38 n n C16 H7 A1L23 sing 39 n n C23 H8 A1L23 sing 40 n n C23 H9 A1L23 sing 41 n n N07 H10 A1L23 sing 42 n n N09 H11 A1L23 sing 43 n n N11 H12 A1L23 sing 44 n n N11 H13 A1L23 sing 45 n n N20 H14 A1L23 sing 46 n n N31 H15 A1L23 sing 47 n n N31 H16 A1L23 sing 48 n n O25 H17 A1L23 sing 49 n n O28 H18 A1L23 sing 50 n n N01 H5 A1L23 sing 51 n n # _atom_sites.entry_id 9IT3 _atom_sites.fract_transf_matrix[1][1] 0.008649 _atom_sites.fract_transf_matrix[1][2] 0.004993 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1L23 A 1 401 401 A1L23 LIG . D 3 NAD A 1 402 701 NAD NAD . E 4 PO4 A 1 403 601 PO4 PO4 . F 4 PO4 B 1 601 601 PO4 PO4 . G 2 A1L23 B 1 602 401 A1L23 LIG . H 3 NAD B 1 603 701 NAD NAD . I 5 HOH A 1 501 22 HOH HOH . I 5 HOH A 2 502 77 HOH HOH . I 5 HOH A 3 503 31 HOH HOH . I 5 HOH A 4 504 51 HOH HOH . I 5 HOH A 5 505 72 HOH HOH . I 5 HOH A 6 506 110 HOH HOH . I 5 HOH A 7 507 35 HOH HOH . I 5 HOH A 8 508 9 HOH HOH . I 5 HOH A 9 509 82 HOH HOH . I 5 HOH A 10 510 49 HOH HOH . I 5 HOH A 11 511 6 HOH HOH . I 5 HOH A 12 512 12 HOH HOH . I 5 HOH A 13 513 56 HOH HOH . I 5 HOH A 14 514 52 HOH HOH . I 5 HOH A 15 515 74 HOH HOH . I 5 HOH A 16 516 100 HOH HOH . I 5 HOH A 17 517 10 HOH HOH . I 5 HOH A 18 518 15 HOH HOH . I 5 HOH A 19 519 42 HOH HOH . I 5 HOH A 20 520 93 HOH HOH . I 5 HOH A 21 521 25 HOH HOH . I 5 HOH A 22 522 8 HOH HOH . I 5 HOH A 23 523 66 HOH HOH . I 5 HOH A 24 524 115 HOH HOH . I 5 HOH A 25 525 3 HOH HOH . I 5 HOH A 26 526 45 HOH HOH . I 5 HOH A 27 527 4 HOH HOH . I 5 HOH A 28 528 69 HOH HOH . I 5 HOH A 29 529 36 HOH HOH . I 5 HOH A 30 530 38 HOH HOH . I 5 HOH A 31 531 48 HOH HOH . I 5 HOH A 32 532 34 HOH HOH . I 5 HOH A 33 533 59 HOH HOH . I 5 HOH A 34 534 84 HOH HOH . I 5 HOH A 35 535 40 HOH HOH . I 5 HOH A 36 536 2 HOH HOH . I 5 HOH A 37 537 26 HOH HOH . I 5 HOH A 38 538 55 HOH HOH . I 5 HOH A 39 539 97 HOH HOH . I 5 HOH A 40 540 54 HOH HOH . I 5 HOH A 41 541 19 HOH HOH . I 5 HOH A 42 542 67 HOH HOH . I 5 HOH A 43 543 101 HOH HOH . I 5 HOH A 44 544 44 HOH HOH . I 5 HOH A 45 545 33 HOH HOH . I 5 HOH A 46 546 76 HOH HOH . I 5 HOH A 47 547 57 HOH HOH . I 5 HOH A 48 548 27 HOH HOH . I 5 HOH A 49 549 99 HOH HOH . I 5 HOH A 50 550 92 HOH HOH . I 5 HOH A 51 551 60 HOH HOH . I 5 HOH A 52 552 102 HOH HOH . I 5 HOH A 53 553 81 HOH HOH . I 5 HOH A 54 554 108 HOH HOH . I 5 HOH A 55 555 114 HOH HOH . I 5 HOH A 56 556 109 HOH HOH . I 5 HOH A 57 557 95 HOH HOH . I 5 HOH A 58 558 106 HOH HOH . I 5 HOH A 59 559 70 HOH HOH . I 5 HOH A 60 560 58 HOH HOH . I 5 HOH A 61 561 111 HOH HOH . I 5 HOH A 62 562 75 HOH HOH . I 5 HOH A 63 563 90 HOH HOH . I 5 HOH A 64 564 47 HOH HOH . I 5 HOH A 65 565 96 HOH HOH . I 5 HOH A 66 566 94 HOH HOH . I 5 HOH A 67 567 86 HOH HOH . I 5 HOH A 68 568 68 HOH HOH . I 5 HOH A 69 569 107 HOH HOH . J 5 HOH B 1 701 71 HOH HOH . J 5 HOH B 2 702 83 HOH HOH . J 5 HOH B 3 703 62 HOH HOH . J 5 HOH B 4 704 104 HOH HOH . J 5 HOH B 5 705 98 HOH HOH . J 5 HOH B 6 706 13 HOH HOH . J 5 HOH B 7 707 20 HOH HOH . J 5 HOH B 8 708 117 HOH HOH . J 5 HOH B 9 709 30 HOH HOH . J 5 HOH B 10 710 53 HOH HOH . J 5 HOH B 11 711 80 HOH HOH . J 5 HOH B 12 712 7 HOH HOH . J 5 HOH B 13 713 5 HOH HOH . J 5 HOH B 14 714 65 HOH HOH . J 5 HOH B 15 715 17 HOH HOH . J 5 HOH B 16 716 16 HOH HOH . J 5 HOH B 17 717 14 HOH HOH . J 5 HOH B 18 718 1 HOH HOH . J 5 HOH B 19 719 41 HOH HOH . J 5 HOH B 20 720 32 HOH HOH . J 5 HOH B 21 721 23 HOH HOH . J 5 HOH B 22 722 28 HOH HOH . J 5 HOH B 23 723 29 HOH HOH . J 5 HOH B 24 724 88 HOH HOH . J 5 HOH B 25 725 43 HOH HOH . J 5 HOH B 26 726 21 HOH HOH . J 5 HOH B 27 727 18 HOH HOH . J 5 HOH B 28 728 89 HOH HOH . J 5 HOH B 29 729 46 HOH HOH . J 5 HOH B 30 730 63 HOH HOH . J 5 HOH B 31 731 24 HOH HOH . J 5 HOH B 32 732 11 HOH HOH . J 5 HOH B 33 733 39 HOH HOH . J 5 HOH B 34 734 78 HOH HOH . J 5 HOH B 35 735 50 HOH HOH . J 5 HOH B 36 736 113 HOH HOH . J 5 HOH B 37 737 85 HOH HOH . J 5 HOH B 38 738 64 HOH HOH . J 5 HOH B 39 739 87 HOH HOH . J 5 HOH B 40 740 37 HOH HOH . J 5 HOH B 41 741 116 HOH HOH . J 5 HOH B 42 742 91 HOH HOH . J 5 HOH B 43 743 103 HOH HOH . J 5 HOH B 44 744 79 HOH HOH . J 5 HOH B 45 745 118 HOH HOH . J 5 HOH B 46 746 61 HOH HOH . J 5 HOH B 47 747 112 HOH HOH . J 5 HOH B 48 748 105 HOH HOH . J 5 HOH B 49 749 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1L23 . . . C 2 51.189 -32.715 17.76 1 42.1 ? C10 A1L23 401 A 1 HETATM 2 C C13 A1L23 . . . C 2 51.624 -33.245 18.963 1 41.05 ? C13 A1L23 401 A 1 HETATM 3 C C15 A1L23 . . . C 2 52.42 -31.074 19.619 1 45.44 ? C15 A1L23 401 A 1 HETATM 4 C C17 A1L23 . . . C 2 51.354 -31.377 17.506 1 44.26 ? C17 A1L23 401 A 1 HETATM 5 C C21 A1L23 . . . C 2 53.321 -27.735 21.455 1 50.19 ? C21 A1L23 401 A 1 HETATM 6 C C22 A1L23 . . . C 2 52.218 -26.696 21.595 1 50.45 ? C22 A1L23 401 A 1 HETATM 7 C C26 A1L23 . . . C 2 55.754 -27.828 20.637 1 59.27 ? C26 A1L23 401 A 1 HETATM 8 C C02 A1L23 . . . C 2 50.913 -39.531 14.617 1 36.02 ? C02 A1L23 401 A 1 HETATM 9 C C04 A1L23 . . . C 2 51.236 -37.329 14.145 1 38.95 ? C04 A1L23 401 A 1 HETATM 10 C C05 A1L23 . . . C 2 50.396 -36.989 15.205 1 36.75 ? C05 A1L23 401 A 1 HETATM 11 C C06 A1L23 . . . C 2 49.81 -37.992 15.961 1 38.52 ? C06 A1L23 401 A 1 HETATM 12 C C08 A1L23 . . . C 2 50.906 -34.913 16.51 1 41.75 ? C08 A1L23 401 A 1 HETATM 13 C C14 A1L23 . . . C 2 52.238 -32.421 19.896 1 42.33 ? C14 A1L23 401 A 1 HETATM 14 C C16 A1L23 . . . C 2 51.966 -30.544 18.428 1 44.35 ? C16 A1L23 401 A 1 HETATM 15 C C18 A1L23 . . . C 2 53.078 -30.153 20.642 1 49.99 ? C18 A1L23 401 A 1 HETATM 16 C C23 A1L23 . . . C 2 54.5 -26.993 20.836 1 58.07 ? C23 A1L23 401 A 1 HETATM 17 C C27 A1L23 . . . C 2 56.549 -27.271 19.458 1 67.54 ? C27 A1L23 401 A 1 HETATM 18 N N01 A1L23 . . . C 2 50.098 -39.238 15.623 1 38.37 ? N01 A1L23 401 A 1 HETATM 19 N N03 A1L23 . . . C 2 51.486 -38.6 13.863 1 37.43 ? N03 A1L23 401 A 1 HETATM 20 N N07 A1L23 . . . C 2 50.091 -35.617 15.536 1 34.33 ? N07 A1L23 401 A 1 HETATM 21 N N09 A1L23 . . . C 2 50.518 -33.551 16.787 1 42.86 ? N09 A1L23 401 A 1 HETATM 22 N N11 A1L23 . . . C 2 51.82 -36.26 13.373 1 38.28 ? N11 A1L23 401 A 1 HETATM 23 N N20 A1L23 . . . C 2 52.787 -28.726 20.531 1 46.93 ? N20 A1L23 401 A 1 HETATM 24 N N31 A1L23 . . . C 2 51.183 -40.925 14.342 1 38.71 ? N31 A1L23 401 A 1 HETATM 25 O O12 A1L23 . . . C 2 51.85 -35.423 17.048 1 39.6 ? O12 A1L23 401 A 1 HETATM 26 O O19 A1L23 . . . C 2 53.772 -30.609 21.506 1 46.69 ? O19 A1L23 401 A 1 HETATM 27 O O24 A1L23 . . . C 2 51.215 -26.748 20.826 1 50.57 ? O24 A1L23 401 A 1 HETATM 28 O O25 A1L23 . . . C 2 52.306 -25.78 22.448 1 49.84 ? O25 A1L23 401 A 1 HETATM 29 O O28 A1L23 . . . C 2 57.806 -27.374 19.433 1 70.64 ? O28 A1L23 401 A 1 HETATM 30 O O29 A1L23 . . . C 2 55.939 -26.711 18.501 1 70.01 ? O29 A1L23 401 A 1 HETATM 31 O O30 A1L23 . . . C 2 49.069 -37.732 16.875 1 38.93 ? O30 A1L23 401 A 1 HETATM 32 CL CL32 A1L23 . . . C 2 50.785 -30.738 15.948 1 50.66 ? CL32 A1L23 401 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 32 #