data_9ITA # _model_server_result.job_id 3NVWAeFxcRIF3j-L_iYBag _model_server_result.datetime_utc '2025-01-09 18:09:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ita # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9ITA # _exptl.entry_id 9ITA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]-3-methyl-phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9ITA _cell.length_a 115.343 _cell.length_b 115.343 _cell.length_c 113.362 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ITA _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C18 H21 N7 O7' _chem_comp.formula_weight 447.402 _chem_comp.id A1L25 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]-3-methyl-phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O27 C25 A1L25 doub 1 n n C25 C20 A1L25 sing 2 n n C25 O26 A1L25 sing 3 n n C20 C28 A1L25 sing 4 n n C20 N18 A1L25 sing 5 n n O19 C17 A1L25 doub 6 n n C28 C29 A1L25 sing 7 n n N18 C17 A1L25 sing 8 n n C17 C14 A1L25 sing 9 n n O32 C30 A1L25 doub 10 n n C13 C14 A1L25 doub 11 n y C13 C12 A1L25 sing 12 n y C29 C30 A1L25 sing 13 n n C14 C15 A1L25 sing 14 n y C30 O31 A1L25 sing 15 n n C12 C11 A1L25 doub 16 n y C15 C16 A1L25 doub 17 n y C11 C16 A1L25 sing 18 n y C11 N10 A1L25 sing 19 n n C16 C24 A1L25 sing 20 n n O07 C08 A1L25 doub 21 n n O21 C03 A1L25 doub 22 n n N10 C08 A1L25 sing 23 n n C08 N22 A1L25 sing 24 n n C03 N02 A1L25 sing 25 n n C03 C04 A1L25 sing 26 n n N02 C01 A1L25 sing 27 n n N22 C04 A1L25 sing 28 n n C04 C05 A1L25 doub 29 n n C01 N09 A1L25 sing 30 n n C01 N06 A1L25 doub 31 n n C05 N06 A1L25 sing 32 n n C05 N23 A1L25 sing 33 n n C13 H1 A1L25 sing 34 n n C15 H2 A1L25 sing 35 n n C24 H3 A1L25 sing 36 n n C24 H4 A1L25 sing 37 n n C24 H5 A1L25 sing 38 n n C28 H6 A1L25 sing 39 n n C28 H7 A1L25 sing 40 n n C12 H8 A1L25 sing 41 n n C20 H9 A1L25 sing 42 n n C29 H10 A1L25 sing 43 n n C29 H11 A1L25 sing 44 n n N09 H13 A1L25 sing 45 n n N09 H14 A1L25 sing 46 n n N10 H15 A1L25 sing 47 n n N18 H16 A1L25 sing 48 n n N22 H17 A1L25 sing 49 n n N23 H18 A1L25 sing 50 n n N23 H19 A1L25 sing 51 n n O26 H20 A1L25 sing 52 n n O31 H21 A1L25 sing 53 n n N02 H22 A1L25 sing 54 n n # _atom_sites.entry_id 9ITA _atom_sites.fract_transf_matrix[1][1] 0.00867 _atom_sites.fract_transf_matrix[1][2] 0.005006 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1L25 A 1 401 401 A1L25 022 . D 3 NAD A 1 402 501 NAD NAD . E 4 PO4 A 1 403 1 PO4 PO4 . F 2 A1L25 B 1 401 401 A1L25 022 . G 3 NAD B 1 402 501 NAD NAD . H 4 PO4 B 1 403 2 PO4 PO4 . I 5 HOH A 1 501 21 HOH HOH . I 5 HOH A 2 502 22 HOH HOH . I 5 HOH A 3 503 5 HOH HOH . I 5 HOH A 4 504 12 HOH HOH . I 5 HOH A 5 505 4 HOH HOH . I 5 HOH A 6 506 17 HOH HOH . I 5 HOH A 7 507 27 HOH HOH . I 5 HOH A 8 508 13 HOH HOH . I 5 HOH A 9 509 9 HOH HOH . I 5 HOH A 10 510 33 HOH HOH . I 5 HOH A 11 511 8 HOH HOH . I 5 HOH A 12 512 15 HOH HOH . I 5 HOH A 13 513 34 HOH HOH . I 5 HOH A 14 514 36 HOH HOH . I 5 HOH A 15 515 24 HOH HOH . I 5 HOH A 16 516 19 HOH HOH . I 5 HOH A 17 517 25 HOH HOH . I 5 HOH A 18 518 20 HOH HOH . I 5 HOH A 19 519 18 HOH HOH . I 5 HOH A 20 520 31 HOH HOH . I 5 HOH A 21 521 14 HOH HOH . I 5 HOH A 22 522 35 HOH HOH . I 5 HOH A 23 523 10 HOH HOH . J 5 HOH B 1 501 2 HOH HOH . J 5 HOH B 2 502 16 HOH HOH . J 5 HOH B 3 503 11 HOH HOH . J 5 HOH B 4 504 3 HOH HOH . J 5 HOH B 5 505 23 HOH HOH . J 5 HOH B 6 506 32 HOH HOH . J 5 HOH B 7 507 7 HOH HOH . J 5 HOH B 8 508 6 HOH HOH . J 5 HOH B 9 509 28 HOH HOH . J 5 HOH B 10 510 30 HOH HOH . J 5 HOH B 11 511 37 HOH HOH . J 5 HOH B 12 512 1 HOH HOH . J 5 HOH B 13 513 26 HOH HOH . J 5 HOH B 14 514 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 A1L25 . . . C 2 -53.642 27.864 -17.681 1 50.42 ? C11 A1L25 401 A 1 HETATM 2 C C13 A1L25 . . . C 2 -54.061 28.996 -19.827 1 52.07 ? C13 A1L25 401 A 1 HETATM 3 C C14 A1L25 . . . C 2 -52.784 29.794 -19.55 1 54.88 ? C14 A1L25 401 A 1 HETATM 4 C C15 A1L25 . . . C 2 -52.078 29.589 -18.437 1 51.1 ? C15 A1L25 401 A 1 HETATM 5 C C16 A1L25 . . . C 2 -52.54 28.534 -17.441 1 54.13 ? C16 A1L25 401 A 1 HETATM 6 C C17 A1L25 . . . C 2 -52.323 30.83 -20.581 1 53.26 ? C17 A1L25 401 A 1 HETATM 7 C C24 A1L25 . . . C 2 -51.787 28.253 -16.131 1 54.11 ? C24 A1L25 401 A 1 HETATM 8 C C28 A1L25 . . . C 2 -50.522 33.624 -21.114 1 53.55 ? C28 A1L25 401 A 1 HETATM 9 C C01 A1L25 . . . C 2 -59.511 24.233 -14.553 1 39.46 ? C01 A1L25 401 A 1 HETATM 10 C C03 A1L25 . . . C 2 -57.563 24.052 -15.897 1 41.29 ? C03 A1L25 401 A 1 HETATM 11 C C04 A1L25 . . . C 2 -56.932 25.068 -15.118 1 42.36 ? C04 A1L25 401 A 1 HETATM 12 C C05 A1L25 . . . C 2 -57.592 25.636 -14.089 1 39.49 ? C05 A1L25 401 A 1 HETATM 13 C C08 A1L25 . . . C 2 -55.396 26.516 -16.439 1 47.74 ? C08 A1L25 401 A 1 HETATM 14 C C12 A1L25 . . . C 2 -54.455 28.087 -18.956 1 50.71 ? C12 A1L25 401 A 1 HETATM 15 C C20 A1L25 . . . C 2 -50.32 32.152 -21.501 1 52.35 ? C20 A1L25 401 A 1 HETATM 16 C C25 A1L25 . . . C 2 -48.835 31.782 -21.6 1 54.65 ? C25 A1L25 401 A 1 HETATM 17 C C29 A1L25 . . . C 2 -50.763 33.84 -19.622 1 63.33 ? C29 A1L25 401 A 1 HETATM 18 C C30 A1L25 . . . C 2 -51.487 35.177 -19.419 1 68.19 ? C30 A1L25 401 A 1 HETATM 19 N N02 A1L25 . . . C 2 -58.858 23.664 -15.577 1 40.49 ? N02 A1L25 401 A 1 HETATM 20 N N06 A1L25 . . . C 2 -58.885 25.241 -13.778 1 38.54 ? N06 A1L25 401 A 1 HETATM 21 N N09 A1L25 . . . C 2 -60.86 23.785 -14.273 1 41.7 ? N09 A1L25 401 A 1 HETATM 22 N N10 A1L25 . . . C 2 -54.03 26.877 -16.712 1 47.72 ? N10 A1L25 401 A 1 HETATM 23 N N18 A1L25 . . . C 2 -50.913 31.196 -20.584 1 54.97 ? N18 A1L25 401 A 1 HETATM 24 N N22 A1L25 . . . C 2 -55.585 25.483 -15.442 1 39.97 ? N22 A1L25 401 A 1 HETATM 25 N N23 A1L25 . . . C 2 -56.916 26.668 -13.358 1 37.22 ? N23 A1L25 401 A 1 HETATM 26 O O07 A1L25 . . . C 2 -56.316 27.033 -16.99 1 48.53 ? O07 A1L25 401 A 1 HETATM 27 O O19 A1L25 . . . C 2 -53.091 31.324 -21.334 1 49.01 ? O19 A1L25 401 A 1 HETATM 28 O O21 A1L25 . . . C 2 -56.87 23.468 -16.965 1 44.41 ? O21 A1L25 401 A 1 HETATM 29 O O26 A1L25 . . . C 2 -48.335 30.932 -20.804 1 51.88 ? O26 A1L25 401 A 1 HETATM 30 O O27 A1L25 . . . C 2 -48.123 32.292 -22.511 1 58.35 ? O27 A1L25 401 A 1 HETATM 31 O O31 A1L25 . . . C 2 -51.322 35.854 -18.357 1 71.5 ? O31 A1L25 401 A 1 HETATM 32 O O32 A1L25 . . . C 2 -52.257 35.608 -20.32 1 66.94 ? O32 A1L25 401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #