data_9ITA # _model_server_result.job_id 1-VjmusoBvnf9YPWvNTPOw _model_server_result.datetime_utc '2025-01-09 18:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ita # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 9ITA # _exptl.entry_id 9ITA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9ITA _cell.length_a 115.343 _cell.length_b 115.343 _cell.length_c 113.362 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ITA _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 291 n n PA O2A NAD sing 292 n n PA O5B NAD sing 293 n n PA O3 NAD sing 294 n n O2A HOA2 NAD sing 295 n n O5B C5B NAD sing 296 n n C5B C4B NAD sing 297 n n C5B H51A NAD sing 298 n n C5B H52A NAD sing 299 n n C4B O4B NAD sing 300 n n C4B C3B NAD sing 301 n n C4B H4B NAD sing 302 n n O4B C1B NAD sing 303 n n C3B O3B NAD sing 304 n n C3B C2B NAD sing 305 n n C3B H3B NAD sing 306 n n O3B HO3A NAD sing 307 n n C2B O2B NAD sing 308 n n C2B C1B NAD sing 309 n n C2B H2B NAD sing 310 n n O2B HO2A NAD sing 311 n n C1B N9A NAD sing 312 n n C1B H1B NAD sing 313 n n N9A C8A NAD sing 314 n y N9A C4A NAD sing 315 n y C8A N7A NAD doub 316 n y C8A H8A NAD sing 317 n n N7A C5A NAD sing 318 n y C5A C6A NAD sing 319 n y C5A C4A NAD doub 320 n y C6A N6A NAD sing 321 n n C6A N1A NAD doub 322 n y N6A H61A NAD sing 323 n n N6A H62A NAD sing 324 n n N1A C2A NAD sing 325 n y C2A N3A NAD doub 326 n y C2A H2A NAD sing 327 n n N3A C4A NAD sing 328 n y O3 PN NAD sing 329 n n PN O1N NAD doub 330 n n PN O2N NAD sing 331 n n PN O5D NAD sing 332 n n O5D C5D NAD sing 333 n n C5D C4D NAD sing 334 n n C5D H51N NAD sing 335 n n C5D H52N NAD sing 336 n n C4D O4D NAD sing 337 n n C4D C3D NAD sing 338 n n C4D H4D NAD sing 339 n n O4D C1D NAD sing 340 n n C3D O3D NAD sing 341 n n C3D C2D NAD sing 342 n n C3D H3D NAD sing 343 n n O3D HO3N NAD sing 344 n n C2D O2D NAD sing 345 n n C2D C1D NAD sing 346 n n C2D H2D NAD sing 347 n n O2D HO2N NAD sing 348 n n C1D N1N NAD sing 349 n n C1D H1D NAD sing 350 n n N1N C2N NAD sing 351 n y N1N C6N NAD doub 352 n y C2N C3N NAD doub 353 n y C2N H2N NAD sing 354 n n C3N C7N NAD sing 355 n n C3N C4N NAD sing 356 n y C7N O7N NAD doub 357 n n C7N N7N NAD sing 358 n n N7N H71N NAD sing 359 n n N7N H72N NAD sing 360 n n C4N C5N NAD doub 361 n y C4N H4N NAD sing 362 n n C5N C6N NAD sing 363 n y C5N H5N NAD sing 364 n n C6N H6N NAD sing 365 n n # _atom_sites.entry_id 9ITA _atom_sites.fract_transf_matrix[1][1] 0.00867 _atom_sites.fract_transf_matrix[1][2] 0.005006 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1L25 A 1 401 401 A1L25 022 . D 3 NAD A 1 402 501 NAD NAD . E 4 PO4 A 1 403 1 PO4 PO4 . F 2 A1L25 B 1 401 401 A1L25 022 . G 3 NAD B 1 402 501 NAD NAD . H 4 PO4 B 1 403 2 PO4 PO4 . I 5 HOH A 1 501 21 HOH HOH . I 5 HOH A 2 502 22 HOH HOH . I 5 HOH A 3 503 5 HOH HOH . I 5 HOH A 4 504 12 HOH HOH . I 5 HOH A 5 505 4 HOH HOH . I 5 HOH A 6 506 17 HOH HOH . I 5 HOH A 7 507 27 HOH HOH . I 5 HOH A 8 508 13 HOH HOH . I 5 HOH A 9 509 9 HOH HOH . I 5 HOH A 10 510 33 HOH HOH . I 5 HOH A 11 511 8 HOH HOH . I 5 HOH A 12 512 15 HOH HOH . I 5 HOH A 13 513 34 HOH HOH . I 5 HOH A 14 514 36 HOH HOH . I 5 HOH A 15 515 24 HOH HOH . I 5 HOH A 16 516 19 HOH HOH . I 5 HOH A 17 517 25 HOH HOH . I 5 HOH A 18 518 20 HOH HOH . I 5 HOH A 19 519 18 HOH HOH . I 5 HOH A 20 520 31 HOH HOH . I 5 HOH A 21 521 14 HOH HOH . I 5 HOH A 22 522 35 HOH HOH . I 5 HOH A 23 523 10 HOH HOH . J 5 HOH B 1 501 2 HOH HOH . J 5 HOH B 2 502 16 HOH HOH . J 5 HOH B 3 503 11 HOH HOH . J 5 HOH B 4 504 3 HOH HOH . J 5 HOH B 5 505 23 HOH HOH . J 5 HOH B 6 506 32 HOH HOH . J 5 HOH B 7 507 7 HOH HOH . J 5 HOH B 8 508 6 HOH HOH . J 5 HOH B 9 509 28 HOH HOH . J 5 HOH B 10 510 30 HOH HOH . J 5 HOH B 11 511 37 HOH HOH . J 5 HOH B 12 512 1 HOH HOH . J 5 HOH B 13 513 26 HOH HOH . J 5 HOH B 14 514 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 -49.843 24.203 -4.989 0.74 81.36 ? PA NAD 402 A 1 HETATM 2 O O1A NAD . . . D 3 -50.245 25.286 -4.026 0.74 79.25 -1 O1A NAD 402 A 1 HETATM 3 O O2A NAD . . . D 3 -49.877 22.768 -4.522 0.74 66.22 ? O2A NAD 402 A 1 HETATM 4 O O5B NAD . . . D 3 -48.336 24.547 -5.587 0.74 63.54 ? O5B NAD 402 A 1 HETATM 5 C C5B NAD . . . D 3 -47.786 23.767 -6.617 0.74 57.08 ? C5B NAD 402 A 1 HETATM 6 C C4B NAD . . . D 3 -46.591 22.94 -6.146 0.74 56.92 ? C4B NAD 402 A 1 HETATM 7 O O4B NAD . . . D 3 -45.438 23.774 -5.921 0.74 58.1 ? O4B NAD 402 A 1 HETATM 8 C C3B NAD . . . D 3 -46.772 22.155 -4.834 0.74 54.51 ? C3B NAD 402 A 1 HETATM 9 O O3B NAD . . . D 3 -46.629 20.793 -5.152 0.74 50.98 ? O3B NAD 402 A 1 HETATM 10 C C2B NAD . . . D 3 -45.593 22.622 -3.988 0.74 56.01 ? C2B NAD 402 A 1 HETATM 11 O O2B NAD . . . D 3 -45.067 21.643 -3.116 0.74 53.81 ? O2B NAD 402 A 1 HETATM 12 C C1B NAD . . . D 3 -44.613 23.02 -5.069 0.74 56.72 ? C1B NAD 402 A 1 HETATM 13 N N9A NAD . . . D 3 -43.471 23.73 -4.517 0.74 57 ? N9A NAD 402 A 1 HETATM 14 C C8A NAD . . . D 3 -43.464 24.795 -3.661 0.74 55.7 ? C8A NAD 402 A 1 HETATM 15 N N7A NAD . . . D 3 -42.252 25.159 -3.33 0.74 55.23 ? N7A NAD 402 A 1 HETATM 16 C C5A NAD . . . D 3 -41.406 24.275 -3.982 0.74 54.53 ? C5A NAD 402 A 1 HETATM 17 C C6A NAD . . . D 3 -40.001 24.086 -4.081 0.74 55.95 ? C6A NAD 402 A 1 HETATM 18 N N6A NAD . . . D 3 -39.126 24.861 -3.44 0.74 58.26 ? N6A NAD 402 A 1 HETATM 19 N N1A NAD . . . D 3 -39.508 23.085 -4.845 0.74 54.97 ? N1A NAD 402 A 1 HETATM 20 C C2A NAD . . . D 3 -40.397 22.314 -5.482 0.74 53.1 ? C2A NAD 402 A 1 HETATM 21 N N3A NAD . . . D 3 -41.722 22.383 -5.486 0.74 54.06 ? N3A NAD 402 A 1 HETATM 22 C C4A NAD . . . D 3 -42.172 23.38 -4.72 0.74 55.26 ? C4A NAD 402 A 1 HETATM 23 O O3 NAD . . . D 3 -50.788 24.422 -6.331 0.74 65.87 ? O3 NAD 402 A 1 HETATM 24 P PN NAD . . . D 3 -50.791 25.885 -7.058 0.74 83.67 ? PN NAD 402 A 1 HETATM 25 O O1N NAD . . . D 3 -50.145 26.856 -6.089 0.74 71.67 ? O1N NAD 402 A 1 HETATM 26 O O2N NAD . . . D 3 -52.098 26.235 -7.717 0.74 78.45 -1 O2N NAD 402 A 1 HETATM 27 O O5D NAD . . . D 3 -49.694 25.575 -8.246 0.74 73.87 ? O5D NAD 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #