data_9ITD # _model_server_result.job_id 48BD6K27C0weBnh8si0WzQ _model_server_result.datetime_utc '2025-01-09 07:47:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9itd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 9ITD # _exptl.entry_id 9ITD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]-4-(1~{H}-1,2,3,4-tetrazol-5-yl)butanoic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ITD _cell.length_a 65.296 _cell.length_b 200.343 _cell.length_c 239.744 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ITD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C17 H19 N11 O5' _chem_comp.formula_weight 457.403 _chem_comp.id A1L22 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]-4-(1~{H}-1,2,3,4-tetrazol-5-yl)butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C04 A1L22 sing 1 n n N03 C04 A1L22 sing 2 n n N03 C02 A1L22 doub 3 n n C04 C05 A1L22 doub 4 n n N33 C02 A1L22 sing 5 n n C02 N01 A1L22 sing 6 n n C05 N07 A1L22 sing 7 n n C05 C06 A1L22 sing 8 n n N07 C08 A1L22 sing 9 n n N01 C06 A1L22 sing 10 n n C06 O32 A1L22 doub 11 n n C08 N09 A1L22 sing 12 n n C08 O12 A1L22 doub 13 n n N09 C10 A1L22 sing 14 n n C17 C10 A1L22 doub 15 n y C17 C16 A1L22 sing 16 n y C10 C13 A1L22 sing 17 n y N30 N29 A1L22 doub 18 n y N30 N31 A1L22 sing 19 n y N29 N28 A1L22 sing 20 n y C16 C15 A1L22 doub 21 n y N31 C27 A1L22 doub 22 n y C13 C14 A1L22 doub 23 n y N28 C27 A1L22 sing 24 n y C15 C14 A1L22 sing 25 n y C15 C18 A1L22 sing 26 n n C27 C26 A1L22 sing 27 n n O25 C22 A1L22 doub 28 n n N20 C18 A1L22 sing 29 n n N20 C21 A1L22 sing 30 n n C18 O19 A1L22 doub 31 n n C23 C26 A1L22 sing 32 n n C23 C21 A1L22 sing 33 n n C21 C22 A1L22 sing 34 n n C22 O24 A1L22 sing 35 n n C13 H1 A1L22 sing 36 n n C17 H2 A1L22 sing 37 n n C21 H3 A1L22 sing 38 n n C26 H4 A1L22 sing 39 n n C26 H5 A1L22 sing 40 n n C14 H7 A1L22 sing 41 n n C16 H8 A1L22 sing 42 n n C23 H9 A1L22 sing 43 n n C23 H10 A1L22 sing 44 n n N07 H11 A1L22 sing 45 n n N09 H12 A1L22 sing 46 n n N11 H13 A1L22 sing 47 n n N11 H14 A1L22 sing 48 n n N20 H15 A1L22 sing 49 n n N28 H16 A1L22 sing 50 n n N33 H17 A1L22 sing 51 n n N33 H18 A1L22 sing 52 n n O24 H19 A1L22 sing 53 n n N01 H6 A1L22 sing 54 n n # _atom_sites.entry_id 9ITD _atom_sites.fract_transf_matrix[1][1] 0.015315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 401 301 NAP NAP . F 3 A1L22 A 1 402 302 A1L22 LIG . G 2 NAP B 1 401 301 NAP NAP . H 3 A1L22 B 1 402 302 A1L22 LIG . I 2 NAP C 1 401 301 NAP NAP . J 3 A1L22 C 1 402 302 A1L22 LIG . K 2 NAP D 1 401 301 NAP NAP . L 3 A1L22 D 1 402 302 A1L22 LIG . M 4 HOH A 1 501 145 HOH HOH . M 4 HOH A 2 502 21 HOH HOH . M 4 HOH A 3 503 131 HOH HOH . M 4 HOH A 4 504 26 HOH HOH . M 4 HOH A 5 505 109 HOH HOH . M 4 HOH A 6 506 105 HOH HOH . M 4 HOH A 7 507 67 HOH HOH . M 4 HOH A 8 508 4 HOH HOH . M 4 HOH A 9 509 37 HOH HOH . M 4 HOH A 10 510 35 HOH HOH . M 4 HOH A 11 511 63 HOH HOH . M 4 HOH A 12 512 29 HOH HOH . M 4 HOH A 13 513 150 HOH HOH . M 4 HOH A 14 514 65 HOH HOH . M 4 HOH A 15 515 108 HOH HOH . M 4 HOH A 16 516 13 HOH HOH . M 4 HOH A 17 517 97 HOH HOH . M 4 HOH A 18 518 23 HOH HOH . M 4 HOH A 19 519 96 HOH HOH . M 4 HOH A 20 520 140 HOH HOH . M 4 HOH A 21 521 94 HOH HOH . M 4 HOH A 22 522 167 HOH HOH . M 4 HOH A 23 523 8 HOH HOH . M 4 HOH A 24 524 142 HOH HOH . M 4 HOH A 25 525 31 HOH HOH . M 4 HOH A 26 526 7 HOH HOH . M 4 HOH A 27 527 55 HOH HOH . M 4 HOH A 28 528 68 HOH HOH . M 4 HOH A 29 529 75 HOH HOH . M 4 HOH A 30 530 113 HOH HOH . M 4 HOH A 31 531 46 HOH HOH . M 4 HOH A 32 532 134 HOH HOH . M 4 HOH A 33 533 152 HOH HOH . M 4 HOH A 34 534 157 HOH HOH . M 4 HOH A 35 535 146 HOH HOH . M 4 HOH A 36 536 174 HOH HOH . M 4 HOH A 37 537 78 HOH HOH . M 4 HOH A 38 538 158 HOH HOH . M 4 HOH A 39 539 48 HOH HOH . M 4 HOH A 40 540 176 HOH HOH . N 4 HOH B 1 501 92 HOH HOH . N 4 HOH B 2 502 80 HOH HOH . N 4 HOH B 3 503 83 HOH HOH . N 4 HOH B 4 504 79 HOH HOH . N 4 HOH B 5 505 38 HOH HOH . N 4 HOH B 6 506 60 HOH HOH . N 4 HOH B 7 507 43 HOH HOH . N 4 HOH B 8 508 12 HOH HOH . N 4 HOH B 9 509 84 HOH HOH . N 4 HOH B 10 510 114 HOH HOH . N 4 HOH B 11 511 53 HOH HOH . N 4 HOH B 12 512 173 HOH HOH . N 4 HOH B 13 513 47 HOH HOH . N 4 HOH B 14 514 19 HOH HOH . N 4 HOH B 15 515 30 HOH HOH . N 4 HOH B 16 516 41 HOH HOH . N 4 HOH B 17 517 15 HOH HOH . N 4 HOH B 18 518 61 HOH HOH . N 4 HOH B 19 519 50 HOH HOH . N 4 HOH B 20 520 118 HOH HOH . N 4 HOH B 21 521 151 HOH HOH . N 4 HOH B 22 522 153 HOH HOH . N 4 HOH B 23 523 93 HOH HOH . N 4 HOH B 24 524 156 HOH HOH . N 4 HOH B 25 525 98 HOH HOH . N 4 HOH B 26 526 112 HOH HOH . N 4 HOH B 27 527 124 HOH HOH . N 4 HOH B 28 528 16 HOH HOH . N 4 HOH B 29 529 49 HOH HOH . N 4 HOH B 30 530 6 HOH HOH . N 4 HOH B 31 531 39 HOH HOH . N 4 HOH B 32 532 18 HOH HOH . N 4 HOH B 33 533 87 HOH HOH . N 4 HOH B 34 534 1 HOH HOH . N 4 HOH B 35 535 11 HOH HOH . N 4 HOH B 36 536 132 HOH HOH . N 4 HOH B 37 537 144 HOH HOH . N 4 HOH B 38 538 161 HOH HOH . N 4 HOH B 39 539 66 HOH HOH . N 4 HOH B 40 540 164 HOH HOH . N 4 HOH B 41 541 137 HOH HOH . N 4 HOH B 42 542 62 HOH HOH . N 4 HOH B 43 543 101 HOH HOH . N 4 HOH B 44 544 103 HOH HOH . N 4 HOH B 45 545 89 HOH HOH . N 4 HOH B 46 546 111 HOH HOH . N 4 HOH B 47 547 170 HOH HOH . N 4 HOH B 48 548 171 HOH HOH . N 4 HOH B 49 549 14 HOH HOH . N 4 HOH B 50 550 159 HOH HOH . N 4 HOH B 51 551 102 HOH HOH . N 4 HOH B 52 552 120 HOH HOH . N 4 HOH B 53 553 127 HOH HOH . N 4 HOH B 54 554 135 HOH HOH . N 4 HOH B 55 555 122 HOH HOH . N 4 HOH B 56 556 147 HOH HOH . O 4 HOH C 1 501 24 HOH HOH . O 4 HOH C 2 502 69 HOH HOH . O 4 HOH C 3 503 51 HOH HOH . O 4 HOH C 4 504 81 HOH HOH . O 4 HOH C 5 505 44 HOH HOH . O 4 HOH C 6 506 73 HOH HOH . O 4 HOH C 7 507 64 HOH HOH . O 4 HOH C 8 508 121 HOH HOH . O 4 HOH C 9 509 17 HOH HOH . O 4 HOH C 10 510 10 HOH HOH . O 4 HOH C 11 511 9 HOH HOH . O 4 HOH C 12 512 45 HOH HOH . O 4 HOH C 13 513 72 HOH HOH . O 4 HOH C 14 514 107 HOH HOH . O 4 HOH C 15 515 2 HOH HOH . O 4 HOH C 16 516 125 HOH HOH . O 4 HOH C 17 517 148 HOH HOH . O 4 HOH C 18 518 149 HOH HOH . O 4 HOH C 19 519 40 HOH HOH . O 4 HOH C 20 520 25 HOH HOH . O 4 HOH C 21 521 104 HOH HOH . O 4 HOH C 22 522 22 HOH HOH . O 4 HOH C 23 523 180 HOH HOH . O 4 HOH C 24 524 86 HOH HOH . O 4 HOH C 25 525 128 HOH HOH . O 4 HOH C 26 526 143 HOH HOH . O 4 HOH C 27 527 56 HOH HOH . O 4 HOH C 28 528 3 HOH HOH . O 4 HOH C 29 529 54 HOH HOH . O 4 HOH C 30 530 116 HOH HOH . O 4 HOH C 31 531 28 HOH HOH . O 4 HOH C 32 532 59 HOH HOH . O 4 HOH C 33 533 130 HOH HOH . O 4 HOH C 34 534 106 HOH HOH . O 4 HOH C 35 535 163 HOH HOH . O 4 HOH C 36 536 34 HOH HOH . O 4 HOH C 37 537 162 HOH HOH . O 4 HOH C 38 538 160 HOH HOH . O 4 HOH C 39 539 138 HOH HOH . O 4 HOH C 40 540 168 HOH HOH . O 4 HOH C 41 541 166 HOH HOH . O 4 HOH C 42 542 74 HOH HOH . P 4 HOH D 1 501 85 HOH HOH . P 4 HOH D 2 502 95 HOH HOH . P 4 HOH D 3 503 90 HOH HOH . P 4 HOH D 4 504 172 HOH HOH . P 4 HOH D 5 505 71 HOH HOH . P 4 HOH D 6 506 70 HOH HOH . P 4 HOH D 7 507 32 HOH HOH . P 4 HOH D 8 508 33 HOH HOH . P 4 HOH D 9 509 57 HOH HOH . P 4 HOH D 10 510 100 HOH HOH . P 4 HOH D 11 511 115 HOH HOH . P 4 HOH D 12 512 165 HOH HOH . P 4 HOH D 13 513 139 HOH HOH . P 4 HOH D 14 514 177 HOH HOH . P 4 HOH D 15 515 36 HOH HOH . P 4 HOH D 16 516 136 HOH HOH . P 4 HOH D 17 517 77 HOH HOH . P 4 HOH D 18 518 5 HOH HOH . P 4 HOH D 19 519 123 HOH HOH . P 4 HOH D 20 520 126 HOH HOH . P 4 HOH D 21 521 20 HOH HOH . P 4 HOH D 22 522 129 HOH HOH . P 4 HOH D 23 523 119 HOH HOH . P 4 HOH D 24 524 52 HOH HOH . P 4 HOH D 25 525 117 HOH HOH . P 4 HOH D 26 526 58 HOH HOH . P 4 HOH D 27 527 27 HOH HOH . P 4 HOH D 28 528 178 HOH HOH . P 4 HOH D 29 529 88 HOH HOH . P 4 HOH D 30 530 169 HOH HOH . P 4 HOH D 31 531 76 HOH HOH . P 4 HOH D 32 532 42 HOH HOH . P 4 HOH D 33 533 99 HOH HOH . P 4 HOH D 34 534 110 HOH HOH . P 4 HOH D 35 535 141 HOH HOH . P 4 HOH D 36 536 154 HOH HOH . P 4 HOH D 37 537 175 HOH HOH . P 4 HOH D 38 538 133 HOH HOH . P 4 HOH D 39 539 82 HOH HOH . P 4 HOH D 40 540 91 HOH HOH . P 4 HOH D 41 541 155 HOH HOH . P 4 HOH D 42 542 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1L22 . . . H 3 19.736 8.734 51.077 1 43.32 ? C10 A1L22 402 B 1 HETATM 2 C C13 A1L22 . . . H 3 20.112 8.469 52.392 1 42.75 ? C13 A1L22 402 B 1 HETATM 3 C C15 A1L22 . . . H 3 19.373 10.655 53.034 1 45.83 ? C15 A1L22 402 B 1 HETATM 4 C C17 A1L22 . . . H 3 19.152 9.956 50.746 1 38.42 ? C17 A1L22 402 B 1 HETATM 5 C C21 A1L22 . . . H 3 18.438 14.071 54.59 1 42.5 ? C21 A1L22 402 B 1 HETATM 6 C C22 A1L22 . . . H 3 17.396 14.92 53.858 1 49.6 ? C22 A1L22 402 B 1 HETATM 7 C C26 A1L22 . . . H 3 20.632 15.082 53.707 1 51.06 ? C26 A1L22 402 B 1 HETATM 8 C C02 A1L22 . . . H 3 21.77 1.793 48.944 1 34.1 ? C02 A1L22 402 B 1 HETATM 9 C C04 A1L22 . . . H 3 22.31 3.951 48.41 1 31.5 ? C04 A1L22 402 B 1 HETATM 10 C C05 A1L22 . . . H 3 21.066 4.334 48.888 1 33.82 ? C05 A1L22 402 B 1 HETATM 11 C C06 A1L22 . . . H 3 20.195 3.383 49.396 1 33.63 ? C06 A1L22 402 B 1 HETATM 12 C C08 A1L22 . . . H 3 20.505 6.432 50.138 1 38.98 ? C08 A1L22 402 B 1 HETATM 13 C C14 A1L22 . . . H 3 19.923 9.429 53.379 1 41.43 ? C14 A1L22 402 B 1 HETATM 14 C C16 A1L22 . . . H 3 18.977 10.921 51.724 1 38.87 ? C16 A1L22 402 B 1 HETATM 15 C C18 A1L22 . . . H 3 19.148 11.722 54.1 1 44.91 ? C18 A1L22 402 B 1 HETATM 16 C C23 A1L22 . . . H 3 19.731 14.816 54.918 1 43.91 ? C23 A1L22 402 B 1 HETATM 17 C C27 A1L22 . . . H 3 21.732 16.099 54.047 1 54.61 ? C27 A1L22 402 B 1 HETATM 18 N N01 A1L22 . . . H 3 20.586 2.134 49.411 1 30.35 ? N01 A1L22 402 B 1 HETATM 19 N N03 A1L22 . . . H 3 22.645 2.674 48.457 1 34.57 ? N03 A1L22 402 B 1 HETATM 20 N N07 A1L22 . . . H 3 20.537 5.671 48.912 1 39.82 ? N07 A1L22 402 B 1 HETATM 21 N N09 A1L22 . . . H 3 19.89 7.745 50.027 1 34.63 ? N09 A1L22 402 B 1 HETATM 22 N N11 A1L22 . . . H 3 23.249 4.907 47.874 1 35.83 ? N11 A1L22 402 B 1 HETATM 23 N N20 A1L22 . . . H 3 18.708 13.017 53.646 1 40.5 ? N20 A1L22 402 B 1 HETATM 24 N N28 A1L22 . . . H 3 21.852 16.793 55.22 1 57.32 ? N28 A1L22 402 B 1 HETATM 25 N N29 A1L22 . . . H 3 22.943 17.58 55.129 1 55.65 ? N29 A1L22 402 B 1 HETATM 26 N N30 A1L22 . . . H 3 23.497 17.394 53.952 1 47.77 ? N30 A1L22 402 B 1 HETATM 27 N N31 A1L22 . . . H 3 22.776 16.484 53.254 1 56.31 ? N31 A1L22 402 B 1 HETATM 28 N N33 A1L22 . . . H 3 22.126 0.393 49.002 1 29.6 ? N33 A1L22 402 B 1 HETATM 29 O O12 A1L22 . . . H 3 20.988 5.991 51.131 1 34.24 ? O12 A1L22 402 B 1 HETATM 30 O O19 A1L22 . . . H 3 19.291 11.494 55.26 1 47.05 ? O19 A1L22 402 B 1 HETATM 31 O O24 A1L22 . . . H 3 16.637 15.726 54.482 1 42.12 ? O24 A1L22 402 B 1 HETATM 32 O O25 A1L22 . . . H 3 17.294 14.773 52.599 1 46.08 ? O25 A1L22 402 B 1 HETATM 33 O O32 A1L22 . . . H 3 18.93 3.759 49.871 1 34.93 ? O32 A1L22 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 33 #