data_9IUM # _model_server_result.job_id K84vI5UMA7DMSoZW8ampmQ _model_server_result.datetime_utc '2024-10-19 20:20:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ium # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1601}' # _entry.id 9IUM # _exptl.entry_id 9IUM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1047.088 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Pip2(20:4/18:0) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9IUM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 712 A CYS 712 1_555 A SG CYS 732 A CYS 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 1402 A CYS 1402 1_555 A SG CYS 1444 A CYS 1444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 1418 A CYS 1418 1_555 A SG CYS 1441 A CYS 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C47 H85 O19 P3' _chem_comp.formula_weight 1047.088 _chem_comp.id A1L26 _chem_comp.mon_nstd_flag . _chem_comp.name Pip2(20:4/18:0) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2R)-3-[hydroxy-[(1S,5S)-2,3,6-trihydroxy-4,5-diphosphonooxycyclohexyl]oxyphosphoryl]oxy-2-octadecanoyloxypropyl] (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate;Phosphatidylinositol Diphosphate(20:4n6/18:0)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 A1L26 sing 1 n n C03 C02 A1L26 sing 2 n n C04 C03 A1L26 sing 3 n n C05 C04 A1L26 sing 4 n n C06 C05 A1L26 sing 5 n n C07 C06 A1L26 sing 6 n n C08 C07 A1L26 sing 7 n n C09 C08 A1L26 sing 8 n n C10 C09 A1L26 sing 9 n n C11 C10 A1L26 sing 10 n n C12 C11 A1L26 sing 11 n n C13 C12 A1L26 sing 12 n n C14 C13 A1L26 sing 13 n n C15 C14 A1L26 sing 14 n n C16 C15 A1L26 sing 15 n n C17 C16 A1L26 sing 16 n n C18 C17 A1L26 sing 17 n n O19 C18 A1L26 doub 18 n n O20 C18 A1L26 sing 19 n n C21 O20 A1L26 sing 20 n n O23 C22 A1L26 sing 21 n n C24 O23 A1L26 sing 22 n n O25 C24 A1L26 doub 23 n n C26 C24 A1L26 sing 24 n n C27 C26 A1L26 sing 25 n n C28 C27 A1L26 sing 26 n n C29 C28 A1L26 sing 27 n n C30 C29 A1L26 doub 28 e n C31 C30 A1L26 sing 29 n n C32 C31 A1L26 sing 30 n n C33 C32 A1L26 doub 31 e n C34 C33 A1L26 sing 32 n n C35 C34 A1L26 sing 33 n n C36 C35 A1L26 doub 34 e n C37 C36 A1L26 sing 35 n n C38 C37 A1L26 sing 36 n n C39 C38 A1L26 doub 37 e n C40 C39 A1L26 sing 38 n n C41 C40 A1L26 sing 39 n n C42 C41 A1L26 sing 40 n n C43 C42 A1L26 sing 41 n n C44 C43 A1L26 sing 42 n n C22 C21 A1L26 sing 43 n n C45 C21 A1L26 sing 44 n n O46 C45 A1L26 sing 45 n n P47 O46 A1L26 sing 46 n n O48 P47 A1L26 sing 47 n n O49 P47 A1L26 doub 48 n n O50 P47 A1L26 sing 49 n n C51 O50 A1L26 sing 50 n n C52 C51 A1L26 sing 51 n n O57 C56 A1L26 sing 52 n n C56 C55 A1L26 sing 53 n n O58 C55 A1L26 sing 54 n n C55 C54 A1L26 sing 55 n n O59 C54 A1L26 sing 56 n n P60 O59 A1L26 sing 57 n n O61 P60 A1L26 sing 58 n n O62 P60 A1L26 doub 59 n n O63 P60 A1L26 sing 60 n n C54 C53 A1L26 sing 61 n n O64 C53 A1L26 sing 62 n n P65 O64 A1L26 sing 63 n n O66 P65 A1L26 doub 64 n n O67 P65 A1L26 sing 65 n n O68 P65 A1L26 sing 66 n n C53 C52 A1L26 sing 67 n n O69 C52 A1L26 sing 68 n n C51 C56 A1L26 sing 69 n n C10 H102 A1L26 sing 70 n n C10 H101 A1L26 sing 71 n n C13 H132 A1L26 sing 72 n n C13 H131 A1L26 sing 73 n n C15 H151 A1L26 sing 74 n n C15 H152 A1L26 sing 75 n n C17 H172 A1L26 sing 76 n n C17 H171 A1L26 sing 77 n n C21 H211 A1L26 sing 78 n n C22 H222 A1L26 sing 79 n n C22 H221 A1L26 sing 80 n n C26 H261 A1L26 sing 81 n n C26 H262 A1L26 sing 82 n n C28 H282 A1L26 sing 83 n n C28 H281 A1L26 sing 84 n n C01 H011 A1L26 sing 85 n n C01 H013 A1L26 sing 86 n n C01 H012 A1L26 sing 87 n n C02 H022 A1L26 sing 88 n n C02 H021 A1L26 sing 89 n n C03 H032 A1L26 sing 90 n n C03 H031 A1L26 sing 91 n n C04 H042 A1L26 sing 92 n n C04 H041 A1L26 sing 93 n n C05 H052 A1L26 sing 94 n n C05 H051 A1L26 sing 95 n n C06 H062 A1L26 sing 96 n n C06 H061 A1L26 sing 97 n n C07 H072 A1L26 sing 98 n n C07 H071 A1L26 sing 99 n n C08 H081 A1L26 sing 100 n n C08 H082 A1L26 sing 101 n n C09 H091 A1L26 sing 102 n n C09 H092 A1L26 sing 103 n n C11 H112 A1L26 sing 104 n n C11 H111 A1L26 sing 105 n n C12 H121 A1L26 sing 106 n n C12 H122 A1L26 sing 107 n n C14 H142 A1L26 sing 108 n n C14 H141 A1L26 sing 109 n n C16 H161 A1L26 sing 110 n n C16 H162 A1L26 sing 111 n n C27 H272 A1L26 sing 112 n n C27 H271 A1L26 sing 113 n n C29 H291 A1L26 sing 114 n n C30 H301 A1L26 sing 115 n n C31 H311 A1L26 sing 116 n n C31 H312 A1L26 sing 117 n n C32 H321 A1L26 sing 118 n n C33 H331 A1L26 sing 119 n n C34 H342 A1L26 sing 120 n n C34 H341 A1L26 sing 121 n n C35 H351 A1L26 sing 122 n n C36 H361 A1L26 sing 123 n n C37 H372 A1L26 sing 124 n n C37 H371 A1L26 sing 125 n n C38 H381 A1L26 sing 126 n n C39 H391 A1L26 sing 127 n n C40 H401 A1L26 sing 128 n n C40 H402 A1L26 sing 129 n n C41 H411 A1L26 sing 130 n n C41 H412 A1L26 sing 131 n n C42 H422 A1L26 sing 132 n n C42 H421 A1L26 sing 133 n n C43 H431 A1L26 sing 134 n n C43 H432 A1L26 sing 135 n n C44 H441 A1L26 sing 136 n n C44 H442 A1L26 sing 137 n n C44 H443 A1L26 sing 138 n n C45 H451 A1L26 sing 139 n n C45 H452 A1L26 sing 140 n n C51 H511 A1L26 sing 141 n n C52 H521 A1L26 sing 142 n n C53 H531 A1L26 sing 143 n n C54 H541 A1L26 sing 144 n n C55 H551 A1L26 sing 145 n n C56 H561 A1L26 sing 146 n n O48 H1 A1L26 sing 147 n n O57 H571 A1L26 sing 148 n n O58 H581 A1L26 sing 149 n n O61 H2 A1L26 sing 150 n n O63 H3 A1L26 sing 151 n n O67 H4 A1L26 sing 152 n n O68 H5 A1L26 sing 153 n n O69 H691 A1L26 sing 154 n n # _atom_sites.entry_id 9IUM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1L26 A 1 1601 1504 A1L26 LIG . C 3 A1L27 A 1 1602 1503 A1L27 MIL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1L26 . . . B 2 133.309 111.693 147.866 1 70.93 ? C10 A1L26 1601 A 1 HETATM 2 C C13 A1L26 . . . B 2 136.863 111.281 149.545 1 72.19 ? C13 A1L26 1601 A 1 HETATM 3 C C15 A1L26 . . . B 2 139.179 111.948 148.637 1 74.33 ? C15 A1L26 1601 A 1 HETATM 4 C C17 A1L26 . . . B 2 141.073 110.318 147.998 1 72.95 ? C17 A1L26 1601 A 1 HETATM 5 C C21 A1L26 . . . B 2 143.679 112.407 149.833 1 75.85 ? C21 A1L26 1601 A 1 HETATM 6 C C22 A1L26 . . . B 2 143.797 113.921 150.087 1 76.22 ? C22 A1L26 1601 A 1 HETATM 7 C C24 A1L26 . . . B 2 141.943 114.096 151.574 1 75.5 ? C24 A1L26 1601 A 1 HETATM 8 C C26 A1L26 . . . B 2 140.532 114.621 151.984 1 71.06 ? C26 A1L26 1601 A 1 HETATM 9 C C28 A1L26 . . . B 2 138.472 114.252 153.526 1 74.15 ? C28 A1L26 1601 A 1 HETATM 10 C C01 A1L26 . . . B 2 124.38 111.141 144.798 1 76.19 ? C01 A1L26 1601 A 1 HETATM 11 C C02 A1L26 . . . B 2 125.126 110.088 145.648 1 75.81 ? C02 A1L26 1601 A 1 HETATM 12 C C03 A1L26 . . . B 2 126.566 110.529 145.984 1 74.96 ? C03 A1L26 1601 A 1 HETATM 13 C C04 A1L26 . . . B 2 126.965 111.835 145.252 1 74.46 ? C04 A1L26 1601 A 1 HETATM 14 C C05 A1L26 . . . B 2 128.495 111.928 145.031 1 72 ? C05 A1L26 1601 A 1 HETATM 15 C C06 A1L26 . . . B 2 129.263 110.881 145.878 1 75.19 ? C06 A1L26 1601 A 1 HETATM 16 C C07 A1L26 . . . B 2 130.657 111.395 146.339 1 71.06 ? C07 A1L26 1601 A 1 HETATM 17 C C08 A1L26 . . . B 2 130.766 111.446 147.886 1 71.73 ? C08 A1L26 1601 A 1 HETATM 18 C C09 A1L26 . . . B 2 131.972 112.291 148.356 1 74.15 ? C09 A1L26 1601 A 1 HETATM 19 C C11 A1L26 . . . B 2 134.392 111.706 148.971 1 72.93 ? C11 A1L26 1601 A 1 HETATM 20 C C12 A1L26 . . . B 2 135.788 111.312 148.423 1 69.16 ? C12 A1L26 1601 A 1 HETATM 21 C C14 A1L26 . . . B 2 138.241 110.779 149.021 1 70.35 ? C14 A1L26 1601 A 1 HETATM 22 C C16 A1L26 . . . B 2 140.213 111.535 147.555 1 78.31 ? C16 A1L26 1601 A 1 HETATM 23 C C18 A1L26 . . . B 2 142.208 110.747 148.979 1 69.91 ? C18 A1L26 1601 A 1 HETATM 24 C C27 A1L26 . . . B 2 139.913 113.775 153.139 1 73.36 ? C27 A1L26 1601 A 1 HETATM 25 C C29 A1L26 . . . B 2 137.638 114.508 152.242 1 71.69 ? C29 A1L26 1601 A 1 HETATM 26 C C30 A1L26 . . . B 2 136.429 115.02 152.543 1 74.28 ? C30 A1L26 1601 A 1 HETATM 27 C C31 A1L26 . . . B 2 135.506 115.32 151.334 1 75.45 ? C31 A1L26 1601 A 1 HETATM 28 C C32 A1L26 . . . B 2 134.183 114.516 151.465 1 74.37 ? C32 A1L26 1601 A 1 HETATM 29 C C33 A1L26 . . . B 2 133.109 115.282 151.163 1 72.73 ? C33 A1L26 1601 A 1 HETATM 30 C C34 A1L26 . . . B 2 131.734 114.567 151.263 1 75.61 ? C34 A1L26 1601 A 1 HETATM 31 C C35 A1L26 . . . B 2 130.595 115.552 150.859 1 76.12 ? C35 A1L26 1601 A 1 HETATM 32 C C36 A1L26 . . . B 2 129.888 115.092 149.805 1 76.25 ? C36 A1L26 1601 A 1 HETATM 33 C C37 A1L26 . . . B 2 128.729 116.013 149.335 1 74.83 ? C37 A1L26 1601 A 1 HETATM 34 C C38 A1L26 . . . B 2 128.274 115.606 147.902 1 74.06 ? C38 A1L26 1601 A 1 HETATM 35 C C39 A1L26 . . . B 2 127.017 116.034 147.653 1 74.98 ? C39 A1L26 1601 A 1 HETATM 36 C C40 A1L26 . . . B 2 126.444 115.693 146.253 1 75.31 ? C40 A1L26 1601 A 1 HETATM 37 C C41 A1L26 . . . B 2 125.897 116.995 145.597 1 75.7 ? C41 A1L26 1601 A 1 HETATM 38 C C42 A1L26 . . . B 2 124.366 117.165 145.811 1 78.39 ? C42 A1L26 1601 A 1 HETATM 39 C C43 A1L26 . . . B 2 123.884 118.611 145.511 1 76.05 ? C43 A1L26 1601 A 1 HETATM 40 C C44 A1L26 . . . B 2 122.401 118.825 145.885 1 71.7 ? C44 A1L26 1601 A 1 HETATM 41 C C45 A1L26 . . . B 2 144.823 111.951 148.936 1 73.12 ? C45 A1L26 1601 A 1 HETATM 42 C C51 A1L26 . . . B 2 147.865 113.258 149.881 1 75.87 ? C51 A1L26 1601 A 1 HETATM 43 C C52 A1L26 . . . B 2 148.804 114.432 149.567 1 74.41 ? C52 A1L26 1601 A 1 HETATM 44 C C53 A1L26 . . . B 2 149.79 114.729 150.704 1 77.98 ? C53 A1L26 1601 A 1 HETATM 45 C C54 A1L26 . . . B 2 149.131 114.524 152.084 1 77.22 ? C54 A1L26 1601 A 1 HETATM 46 C C55 A1L26 . . . B 2 148.707 113.066 152.304 1 75.36 ? C55 A1L26 1601 A 1 HETATM 47 C C56 A1L26 . . . B 2 148.387 112.323 150.993 1 75.49 ? C56 A1L26 1601 A 1 HETATM 48 O O19 A1L26 . . . B 2 142.844 109.931 149.543 1 75.05 ? O19 A1L26 1601 A 1 HETATM 49 O O20 A1L26 . . . B 2 142.462 112.138 149.195 1 72.13 ? O20 A1L26 1601 A 1 HETATM 50 O O23 A1L26 . . . B 2 142.486 114.431 150.301 1 76.83 ? O23 A1L26 1601 A 1 HETATM 51 O O25 A1L26 . . . B 2 142.564 113.405 152.323 1 75.91 ? O25 A1L26 1601 A 1 HETATM 52 O O46 A1L26 . . . B 2 145.122 113.006 148.033 1 75.35 ? O46 A1L26 1601 A 1 HETATM 53 O O48 A1L26 . . . B 2 147.034 114.594 147.278 1 75.59 ? O48 A1L26 1601 A 1 HETATM 54 O O49 A1L26 . . . B 2 146.881 112.35 146.233 1 75.53 ? O49 A1L26 1601 A 1 HETATM 55 O O50 A1L26 . . . B 2 147.702 112.51 148.693 1 82.23 ? O50 A1L26 1601 A 1 HETATM 56 O O57 A1L26 . . . B 2 147.386 111.355 151.265 1 74.15 ? O57 A1L26 1601 A 1 HETATM 57 O O58 A1L26 . . . B 2 147.597 112.998 153.185 1 77.7 ? O58 A1L26 1601 A 1 HETATM 58 O O59 A1L26 . . . B 2 147.991 115.345 152.173 1 80.33 ? O59 A1L26 1601 A 1 HETATM 59 O O61 A1L26 . . . B 2 147.426 116.959 154.117 1 85.12 ? O61 A1L26 1601 A 1 HETATM 60 O O62 A1L26 . . . B 2 147.608 117.876 151.834 1 83.36 ? O62 A1L26 1601 A 1 HETATM 61 O O63 A1L26 . . . B 2 149.638 117.148 153.033 1 80.49 ? O63 A1L26 1601 A 1 HETATM 62 O O64 A1L26 . . . B 2 150.907 113.88 150.605 1 84.49 ? O64 A1L26 1601 A 1 HETATM 63 O O66 A1L26 . . . B 2 151.066 113.869 148.012 1 75.74 ? O66 A1L26 1601 A 1 HETATM 64 O O67 A1L26 . . . B 2 152.863 112.798 149.307 1 78.96 ? O67 A1L26 1601 A 1 HETATM 65 O O68 A1L26 . . . B 2 152.655 115.256 149.288 1 81.1 ? O68 A1L26 1601 A 1 HETATM 66 O O69 A1L26 . . . B 2 148.02 115.579 149.343 1 76.41 ? O69 A1L26 1601 A 1 HETATM 67 P P47 A1L26 . . . B 2 146.708 113.137 147.504 1 86.89 ? P47 A1L26 1601 A 1 HETATM 68 P P60 A1L26 . . . B 2 148.168 116.867 152.804 1 104.1 ? P60 A1L26 1601 A 1 HETATM 69 P P65 A1L26 . . . B 2 151.888 113.954 149.274 1 93.48 ? P65 A1L26 1601 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 208 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 69 #