data_9IVK # _model_server_result.job_id '_YLVUqr4rh3ivrgnOFSe6g' _model_server_result.datetime_utc '2024-11-21 08:38:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ivk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 9IVK # _exptl.entry_id 9IVK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 359.444 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(Z)-1-cyano-2-{6-[(2-hydroxyethyl)(methyl)amino]-1-benzothiophen-2-yl}ethenyl]benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 25 H CYS 25 1_555 B SG CYS 99 H CYS 99 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 25 H CYS 25 1_555 B SG CYS 99 H CYS 99 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 24 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 C SG CYS 24 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C21 H17 N3 O S' _chem_comp.formula_weight 359.444 _chem_comp.id KY6 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(Z)-1-cyano-2-{6-[(2-hydroxyethyl)(methyl)amino]-1-benzothiophen-2-yl}ethenyl]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C07 KY6 doub 171 n y C08 C09 KY6 sing 172 n y C07 C06 KY6 sing 173 n y C10 C09 KY6 sing 174 n y C10 C11 KY6 doub 175 n y C09 C25 KY6 doub 176 n y C06 N02 KY6 sing 177 n n C06 C26 KY6 doub 178 n y N02 C01 KY6 sing 179 n n N02 C03 KY6 sing 180 n n C11 C12 KY6 sing 181 n n C11 S24 KY6 sing 182 n y C12 C13 KY6 doub 183 z n C03 C04 KY6 sing 184 n n C25 C26 KY6 sing 185 n y C25 S24 KY6 sing 186 n y C17 C18 KY6 doub 187 n y C17 C16 KY6 sing 188 n y C18 C19 KY6 sing 189 n y C16 C13 KY6 sing 190 n n C16 C23 KY6 doub 191 n y C13 C14 KY6 sing 192 n n C19 C20 KY6 sing 193 n n C19 C22 KY6 doub 194 n y C20 N21 KY6 trip 195 n n C23 C22 KY6 sing 196 n y C04 O05 KY6 sing 197 n n C14 N15 KY6 trip 198 n n C10 H101 KY6 sing 199 n n C12 H121 KY6 sing 200 n n C17 H171 KY6 sing 201 n n C18 H181 KY6 sing 202 n n C01 H013 KY6 sing 203 n n C01 H012 KY6 sing 204 n n C01 H011 KY6 sing 205 n n C03 H032 KY6 sing 206 n n C03 H031 KY6 sing 207 n n C04 H041 KY6 sing 208 n n C04 H042 KY6 sing 209 n n C07 H071 KY6 sing 210 n n C08 H081 KY6 sing 211 n n C22 H221 KY6 sing 212 n n C23 H231 KY6 sing 213 n n C26 H261 KY6 sing 214 n n O05 H051 KY6 sing 215 n n # _atom_sites.entry_id 9IVK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id KY6 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id KY6 _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 KY6 . . . D 4 111 113.692 75.63 1 39.44 ? C10 KY6 301 A 1 HETATM 2 C C11 KY6 . . . D 4 111.318 112.685 76.5 1 38.43 ? C11 KY6 301 A 1 HETATM 3 C C12 KY6 . . . D 4 110.791 112.625 77.865 1 37.52 ? C12 KY6 301 A 1 HETATM 4 C C13 KY6 . . . D 4 110.871 111.675 78.837 1 36.44 ? C13 KY6 301 A 1 HETATM 5 C C14 KY6 . . . D 4 111.6 110.476 78.523 1 35.42 ? C14 KY6 301 A 1 HETATM 6 C C16 KY6 . . . D 4 110.278 111.736 80.217 1 36.27 ? C16 KY6 301 A 1 HETATM 7 C C17 KY6 . . . D 4 110.423 110.687 81.137 1 35.49 ? C17 KY6 301 A 1 HETATM 8 C C18 KY6 . . . D 4 109.871 110.749 82.413 1 35.51 ? C18 KY6 301 A 1 HETATM 9 C C19 KY6 . . . D 4 109.161 111.874 82.803 1 35.81 ? C19 KY6 301 A 1 HETATM 10 C C20 KY6 . . . D 4 108.587 111.947 84.127 1 35.55 ? C20 KY6 301 A 1 HETATM 11 C C01 KY6 . . . D 4 114.794 111.623 70.787 1 37.12 ? C01 KY6 301 A 1 HETATM 12 C C03 KY6 . . . D 4 113.258 113.084 69.446 1 40.9 ? C03 KY6 301 A 1 HETATM 13 C C04 KY6 . . . D 4 114.088 114.342 69.11 1 42.12 ? C04 KY6 301 A 1 HETATM 14 C C06 KY6 . . . D 4 112.944 112.857 71.943 1 39.77 ? C06 KY6 301 A 1 HETATM 15 C C07 KY6 . . . D 4 112.133 114.022 72.023 1 40.7 ? C07 KY6 301 A 1 HETATM 16 C C08 KY6 . . . D 4 111.46 114.349 73.191 1 40.67 ? C08 KY6 301 A 1 HETATM 17 C C09 KY6 . . . D 4 111.6 113.526 74.324 1 39.63 ? C09 KY6 301 A 1 HETATM 18 C C22 KY6 . . . D 4 109.006 112.931 81.921 1 36.31 ? C22 KY6 301 A 1 HETATM 19 C C23 KY6 . . . D 4 109.56 112.857 80.65 1 36.52 ? C23 KY6 301 A 1 HETATM 20 C C25 KY6 . . . D 4 112.404 112.384 74.256 1 38.77 ? C25 KY6 301 A 1 HETATM 21 C C26 KY6 . . . D 4 113.078 112.031 73.094 1 38.16 ? C26 KY6 301 A 1 HETATM 22 N N02 KY6 . . . D 4 113.621 112.532 70.763 1 39.26 ? N02 KY6 301 A 1 HETATM 23 N N15 KY6 . . . D 4 112.19 109.523 78.278 1 34.18 ? N15 KY6 301 A 1 HETATM 24 N N21 KY6 . . . D 4 108.144 112.043 85.178 1 35.22 ? N21 KY6 301 A 1 HETATM 25 O O05 KY6 . . . D 4 113.838 114.838 67.783 1 44.11 ? O05 KY6 301 A 1 HETATM 26 S S24 KY6 . . . D 4 112.418 111.537 75.767 1 37.82 ? S24 KY6 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #