data_9IVV # _model_server_result.job_id y1G8x6_SyLUFDSKvFmallQ _model_server_result.datetime_utc '2025-07-17 04:08:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ivv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 9IVV # _exptl.entry_id 9IVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.203 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-azanyl-~{N}-[2-(1~{H}-imidazol-4-yl)ethyl]-2-oxidanidyl-1,2,5-oxadiazol-2-ium-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9IVV _cell.length_a 274.6 _cell.length_b 274.6 _cell.length_c 274.6 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 0 1 0 1 0 -68.65 -68.65 68.65 3 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 0 0 4 'point symmetry operation' ? ? 0 0 1 0 -1 0 1 0 0 -68.65 -68.65 68.65 5 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 0 0 0 6 'point symmetry operation' ? ? 0 -1 0 -1 0 0 0 0 -1 -68.65 -68.65 68.65 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 127 A ASP 159 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 A OD2 ASP 127 A ASP 159 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc3 A OE2 GLU 170 A GLU 202 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 A NE2 HIS 298 A HIS 330 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc5 B ZN ZN . A ZN 401 1_555 C N08 A1D94 . A A1D94 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C8 H10 N6 O3' _chem_comp.formula_weight 238.203 _chem_comp.id A1D94 _chem_comp.mon_nstd_flag . _chem_comp.name 4-azanyl-~{N}-[2-(1~{H}-imidazol-4-yl)ethyl]-2-oxidanidyl-1,2,5-oxadiazol-2-ium-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STK779818 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 N08 A1D94 sing 1 n y C09 N10 A1D94 doub 2 n y N08 C07 A1D94 sing 3 n y N10 C06 A1D94 sing 4 n y C07 C06 A1D94 doub 5 n y C06 C05 A1D94 sing 6 n n C05 C04 A1D94 sing 7 n n C04 N03 A1D94 sing 8 n n N03 C02 A1D94 sing 9 n n O13 N12 A1D94 sing 10 n n N12 C11 A1D94 doub 11 n y N12 O14 A1D94 sing 12 n y C02 C11 A1D94 sing 13 n n C02 O01 A1D94 doub 14 n n C11 C16 A1D94 sing 15 n y O14 N15 A1D94 sing 16 n y C16 N15 A1D94 doub 17 n y C16 N17 A1D94 sing 18 n n N17 H1 A1D94 sing 19 n n N17 H2 A1D94 sing 20 n n N03 H3 A1D94 sing 21 n n C04 H4 A1D94 sing 22 n n C04 H5 A1D94 sing 23 n n C05 H6 A1D94 sing 24 n n C05 H7 A1D94 sing 25 n n C07 H8 A1D94 sing 26 n n N08 H9 A1D94 sing 27 n n C09 H10 A1D94 sing 28 n n # _atom_sites.entry_id 9IVV _atom_sites.fract_transf_matrix[1][1] 0.003642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 A1D94 A 1 402 1 A1D94 A08 . D 4 DMS A 1 403 2 DMS DMS . E 4 DMS A 1 404 3 DMS DMS . F 5 GOL A 1 405 1 GOL GOL . G 5 GOL A 1 406 2 GOL GOL . H 5 GOL A 1 407 3 GOL GOL . I 5 GOL A 1 408 4 GOL GOL . J 6 DMF A 1 409 2 DMF DMF . K 7 HOH A 1 501 69 HOH HOH . K 7 HOH A 2 502 65 HOH HOH . K 7 HOH A 3 503 64 HOH HOH . K 7 HOH A 4 504 51 HOH HOH . K 7 HOH A 5 505 66 HOH HOH . K 7 HOH A 6 506 71 HOH HOH . K 7 HOH A 7 507 47 HOH HOH . K 7 HOH A 8 508 68 HOH HOH . K 7 HOH A 9 509 57 HOH HOH . K 7 HOH A 10 510 43 HOH HOH . K 7 HOH A 11 511 72 HOH HOH . K 7 HOH A 12 512 46 HOH HOH . K 7 HOH A 13 513 63 HOH HOH . K 7 HOH A 14 514 54 HOH HOH . K 7 HOH A 15 515 4 HOH HOH . K 7 HOH A 16 516 62 HOH HOH . K 7 HOH A 17 517 1 HOH HOH . K 7 HOH A 18 518 33 HOH HOH . K 7 HOH A 19 519 53 HOH HOH . K 7 HOH A 20 520 70 HOH HOH . K 7 HOH A 21 521 44 HOH HOH . K 7 HOH A 22 522 60 HOH HOH . K 7 HOH A 23 523 27 HOH HOH . K 7 HOH A 24 524 32 HOH HOH . K 7 HOH A 25 525 61 HOH HOH . K 7 HOH A 26 526 35 HOH HOH . K 7 HOH A 27 527 48 HOH HOH . K 7 HOH A 28 528 39 HOH HOH . K 7 HOH A 29 529 56 HOH HOH . K 7 HOH A 30 530 59 HOH HOH . K 7 HOH A 31 531 29 HOH HOH . K 7 HOH A 32 532 17 HOH HOH . K 7 HOH A 33 533 58 HOH HOH . K 7 HOH A 34 534 34 HOH HOH . K 7 HOH A 35 535 55 HOH HOH . K 7 HOH A 36 536 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 A1D94 . . . C 3 -32.627 -23.515 13.196 1 62.83 ? C11 A1D94 402 A 1 HETATM 2 C C16 A1D94 . . . C 3 -32.601 -22.33 13.838 1 71.81 ? C16 A1D94 402 A 1 HETATM 3 N N17 A1D94 . . . C 3 -31.401 -21.717 14.341 1 71.83 ? N17 A1D94 402 A 1 HETATM 4 O O01 A1D94 . . . C 3 -30.431 -24.045 13.399 1 62.27 ? O01 A1D94 402 A 1 HETATM 5 C C02 A1D94 . . . C 3 -31.446 -24.369 12.943 1 60.2 ? C02 A1D94 402 A 1 HETATM 6 N N03 A1D94 . . . C 3 -31.59 -25.564 12.186 1 57.85 ? N03 A1D94 402 A 1 HETATM 7 C C04 A1D94 . . . C 3 -30.426 -26.387 11.996 1 59.99 ? C04 A1D94 402 A 1 HETATM 8 C C05 A1D94 . . . C 3 -29.831 -26.323 10.609 1 45.06 ? C05 A1D94 402 A 1 HETATM 9 C C06 A1D94 . . . C 3 -30.697 -26.831 9.495 1 35.51 ? C06 A1D94 402 A 1 HETATM 10 C C07 A1D94 . . . C 3 -31.908 -26.389 9.11 1 42.94 ? C07 A1D94 402 A 1 HETATM 11 N N08 A1D94 . . . C 3 -32.345 -27.062 8.064 1 37.58 ? N08 A1D94 402 A 1 HETATM 12 C C09 A1D94 . . . C 3 -31.382 -27.942 7.863 1 41.47 ? C09 A1D94 402 A 1 HETATM 13 N N10 A1D94 . . . C 3 -30.415 -27.781 8.698 1 35.5 ? N10 A1D94 402 A 1 HETATM 14 N N12 A1D94 . . . C 3 -33.836 -23.783 12.883 1 64.01 1 N12 A1D94 402 A 1 HETATM 15 O O13 A1D94 . . . C 3 -34.228 -24.914 12.21 1 55.59 -1 O13 A1D94 402 A 1 HETATM 16 O O14 A1D94 . . . C 3 -34.611 -22.781 13.294 1 70.25 ? O14 A1D94 402 A 1 HETATM 17 N N15 A1D94 . . . C 3 -33.823 -21.876 13.893 1 70.79 ? N15 A1D94 402 A 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 141 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #