data_9IWS # _model_server_result.job_id qBiEOogneMonf-sdLnjDLw _model_server_result.datetime_utc '2024-10-16 11:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9iws # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 9IWS # _exptl.entry_id 9IWS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 740.015 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9IWS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IWS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 415 A CYS 415 1_555 A SG CYS 440 A CYS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 415 B CYS 415 1_555 B SG CYS 440 B CYS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C6 H19 O27 P7' _chem_comp.formula_weight 740.015 _chem_comp.id I7P _chem_comp.mon_nstd_flag . _chem_comp.name '(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1D-myo-inositol 5-diphosphate 1,2,3,4,6-pentakisphosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C1 I7P sing 150 n n C2 C1 I7P sing 151 n n C1 C6 I7P sing 152 n n C1 H1 I7P sing 153 n n O12 C2 I7P sing 154 n n C2 C3 I7P sing 155 n n C2 H2 I7P sing 156 n n O13 C3 I7P sing 157 n n C3 C4 I7P sing 158 n n C3 H3 I7P sing 159 n n C4 C5 I7P sing 160 n n C4 O14 I7P sing 161 n n C4 H4 I7P sing 162 n n C6 C5 I7P sing 163 n n C5 O15 I7P sing 164 n n C5 H5 I7P sing 165 n n C6 O16 I7P sing 166 n n C6 H6 I7P sing 167 n n PA1 O11 I7P sing 168 n n PA2 O12 I7P sing 169 n n O13 PA3 I7P sing 170 n n O14 PA4 I7P sing 171 n n O15 PA5 I7P sing 172 n n PA6 O16 I7P sing 173 n n PA1 O21 I7P sing 174 n n O21 HO21 I7P sing 175 n n O22 PA2 I7P sing 176 n n O22 HO22 I7P sing 177 n n PA3 O23 I7P sing 178 n n O23 HO23 I7P sing 179 n n O24 PA4 I7P sing 180 n n O24 HO24 I7P sing 181 n n PA5 O25 I7P doub 182 n n PA6 O26 I7P sing 183 n n O26 HO26 I7P sing 184 n n O31 PA1 I7P sing 185 n n O31 HO31 I7P sing 186 n n O32 PA2 I7P doub 187 n n O33 PA3 I7P doub 188 n n O34 PA4 I7P doub 189 n n PA5 O35 I7P sing 190 n n O35 HO35 I7P sing 191 n n PA6 O36 I7P sing 192 n n O36 HO36 I7P sing 193 n n O41 PA1 I7P doub 194 n n O42 PA2 I7P sing 195 n n O42 HO42 I7P sing 196 n n O43 PA3 I7P sing 197 n n O43 HO43 I7P sing 198 n n PA4 O44 I7P sing 199 n n O44 HO44 I7P sing 200 n n O45 PA5 I7P sing 201 n n O45 PB5 I7P sing 202 n n O46 PA6 I7P doub 203 n n PB5 O55 I7P sing 204 n n O55 HO55 I7P sing 205 n n O65 PB5 I7P sing 206 n n O65 HO65 I7P sing 207 n n O75 PB5 I7P doub 208 n n # _atom_sites.entry_id 9IWS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I7P A 1 701 701 I7P I7P . D 2 I7P A 1 702 703 I7P I7P . E 2 I7P B 1 701 701 I7P I7P . F 2 I7P B 1 702 703 I7P I7P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I7P . . . E 2 157.861 177.885 143.074 1 75.81 ? C1 I7P 701 B 1 HETATM 2 C C2 I7P . . . E 2 157.895 179.251 143.852 1 76.46 ? C2 I7P 701 B 1 HETATM 3 C C3 I7P . . . E 2 159.366 179.712 144.142 1 77.75 ? C3 I7P 701 B 1 HETATM 4 C C4 I7P . . . E 2 160.342 179.527 142.97 1 79.93 ? C4 I7P 701 B 1 HETATM 5 C C5 I7P . . . E 2 160.19 178.127 142.415 1 78.09 ? C5 I7P 701 B 1 HETATM 6 C C6 I7P . . . E 2 158.8 177.91 141.876 1 74.93 ? C6 I7P 701 B 1 HETATM 7 O O11 I7P . . . E 2 156.597 177.555 142.593 1 79.78 ? O11 I7P 701 B 1 HETATM 8 O O12 I7P . . . E 2 157.159 180.229 143.189 1 77.62 ? O12 I7P 701 B 1 HETATM 9 O O13 I7P . . . E 2 159.366 181.07 144.48 1 81.62 ? O13 I7P 701 B 1 HETATM 10 O O14 I7P . . . E 2 161.646 179.639 143.448 1 80.78 ? O14 I7P 701 B 1 HETATM 11 O O15 I7P . . . E 2 161.124 177.949 141.383 1 82.14 ? O15 I7P 701 B 1 HETATM 12 O O16 I7P . . . E 2 158.836 176.647 141.296 1 80.15 ? O16 I7P 701 B 1 HETATM 13 O O21 I7P . . . E 2 155.253 175.357 142.046 1 78.18 ? O21 I7P 701 B 1 HETATM 14 O O22 I7P . . . E 2 155.825 182.434 143.728 1 79.65 ? O22 I7P 701 B 1 HETATM 15 O O23 I7P . . . E 2 157.898 182.427 146.193 1 79.75 ? O23 I7P 701 B 1 HETATM 16 O O24 I7P . . . E 2 164.105 180.353 142.77 1 76.09 ? O24 I7P 701 B 1 HETATM 17 O O25 I7P . . . E 2 161.565 175.38 141.745 1 77.22 ? O25 I7P 701 B 1 HETATM 18 O O26 I7P . . . E 2 159.685 175.586 139.103 1 76.6 ? O26 I7P 701 B 1 HETATM 19 O O31 I7P . . . E 2 156.649 175.418 144.066 1 79.54 ? O31 I7P 701 B 1 HETATM 20 O O32 I7P . . . E 2 154.498 180.46 143.105 1 79.81 ? O32 I7P 701 B 1 HETATM 21 O O33 I7P . . . E 2 160.326 182.555 146.351 1 74.08 ? O33 I7P 701 B 1 HETATM 22 O O34 I7P . . . E 2 162.8 181.852 144.232 1 77.45 ? O34 I7P 701 B 1 HETATM 23 O O35 I7P . . . E 2 163.52 177.09 141.853 1 75.2 ? O35 I7P 701 B 1 HETATM 24 O O36 I7P . . . E 2 158.41 177.832 138.983 1 74.94 ? O36 I7P 701 B 1 HETATM 25 O O41 I7P . . . E 2 154.521 176.768 143.992 1 76.24 ? O41 I7P 701 B 1 HETATM 26 O O42 I7P . . . E 2 155.713 180.477 145.293 1 76.44 ? O42 I7P 701 B 1 HETATM 27 O O43 I7P . . . E 2 159.261 180.396 147.011 1 77.17 ? O43 I7P 701 B 1 HETATM 28 O O44 I7P . . . E 2 162.191 181.498 141.752 1 73.09 ? O44 I7P 701 B 1 HETATM 29 O O45 I7P . . . E 2 162.489 176.525 139.762 1 80.28 ? O45 I7P 701 B 1 HETATM 30 O O46 I7P . . . E 2 157.252 175.676 139.494 1 76.65 ? O46 I7P 701 B 1 HETATM 31 O O55 I7P . . . E 2 163.917 178.572 139.311 1 79 ? O55 I7P 701 B 1 HETATM 32 O O65 I7P . . . E 2 165.062 176.465 139.452 1 79.16 ? O65 I7P 701 B 1 HETATM 33 O O75 I7P . . . E 2 163.648 176.862 137.434 1 74.43 ? O75 I7P 701 B 1 HETATM 34 P PA1 I7P . . . E 2 155.709 176.281 143.195 1 84.17 ? PA1 I7P 701 B 1 HETATM 35 P PA2 I7P . . . E 2 155.771 180.899 143.855 1 83.57 ? PA2 I7P 701 B 1 HETATM 36 P PA3 I7P . . . E 2 159.174 181.575 146.061 1 83.25 ? PA3 I7P 701 B 1 HETATM 37 P PA4 I7P . . . E 2 162.694 180.889 143.029 1 75.93 ? PA4 I7P 701 B 1 HETATM 38 P PA5 I7P . . . E 2 162.188 176.709 141.327 1 77.98 ? PA5 I7P 701 B 1 HETATM 39 P PA6 I7P . . . E 2 158.521 176.441 139.644 1 79.92 ? PA6 I7P 701 B 1 HETATM 40 P PB5 I7P . . . E 2 163.724 177.077 138.926 1 84.16 ? PB5 I7P 701 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #