data_9IWS
#
_model_server_result.job_id            FvyI9rrnT-MlsS4xGFq6Yg 
_model_server_result.datetime_utc      '2024-11-22 23:37:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9iws 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    9IWS 
#
_exptl.entry_id    9IWS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              740.015 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9IWS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9IWS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 415 A CYS 415 1_555 A SG CYS 440 A CYS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 415 B CYS 415 1_555 B SG CYS 440 B CYS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C6 H19 O27 P7' 
_chem_comp.formula_weight    740.015 
_chem_comp.id                I7P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1D-myo-inositol 5-diphosphate 1,2,3,4,6-pentakisphosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 C1 I7P sing 150 n n 
C2 C1 I7P sing 151 n n 
C1 C6 I7P sing 152 n n 
C1 H1 I7P sing 153 n n 
O12 C2 I7P sing 154 n n 
C2 C3 I7P sing 155 n n 
C2 H2 I7P sing 156 n n 
O13 C3 I7P sing 157 n n 
C3 C4 I7P sing 158 n n 
C3 H3 I7P sing 159 n n 
C4 C5 I7P sing 160 n n 
C4 O14 I7P sing 161 n n 
C4 H4 I7P sing 162 n n 
C6 C5 I7P sing 163 n n 
C5 O15 I7P sing 164 n n 
C5 H5 I7P sing 165 n n 
C6 O16 I7P sing 166 n n 
C6 H6 I7P sing 167 n n 
PA1 O11 I7P sing 168 n n 
PA2 O12 I7P sing 169 n n 
O13 PA3 I7P sing 170 n n 
O14 PA4 I7P sing 171 n n 
O15 PA5 I7P sing 172 n n 
PA6 O16 I7P sing 173 n n 
PA1 O21 I7P sing 174 n n 
O21 HO21 I7P sing 175 n n 
O22 PA2 I7P sing 176 n n 
O22 HO22 I7P sing 177 n n 
PA3 O23 I7P sing 178 n n 
O23 HO23 I7P sing 179 n n 
O24 PA4 I7P sing 180 n n 
O24 HO24 I7P sing 181 n n 
PA5 O25 I7P doub 182 n n 
PA6 O26 I7P sing 183 n n 
O26 HO26 I7P sing 184 n n 
O31 PA1 I7P sing 185 n n 
O31 HO31 I7P sing 186 n n 
O32 PA2 I7P doub 187 n n 
O33 PA3 I7P doub 188 n n 
O34 PA4 I7P doub 189 n n 
PA5 O35 I7P sing 190 n n 
O35 HO35 I7P sing 191 n n 
PA6 O36 I7P sing 192 n n 
O36 HO36 I7P sing 193 n n 
O41 PA1 I7P doub 194 n n 
O42 PA2 I7P sing 195 n n 
O42 HO42 I7P sing 196 n n 
O43 PA3 I7P sing 197 n n 
O43 HO43 I7P sing 198 n n 
PA4 O44 I7P sing 199 n n 
O44 HO44 I7P sing 200 n n 
O45 PA5 I7P sing 201 n n 
O45 PB5 I7P sing 202 n n 
O46 PA6 I7P doub 203 n n 
PB5 O55 I7P sing 204 n n 
O55 HO55 I7P sing 205 n n 
O65 PB5 I7P sing 206 n n 
O65 HO65 I7P sing 207 n n 
O75 PB5 I7P doub 208 n n 
#
_atom_sites.entry_id                     9IWS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 I7P A 1 701 701 I7P I7P . 
D 2 I7P A 1 702 703 I7P I7P . 
E 2 I7P B 1 701 701 I7P I7P . 
F 2 I7P B 1 702 703 I7P I7P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I7P . . . D 2 146.166 165.944 156.543 1 195.21 ? C1 I7P 702 A 1 
HETATM 2 C C2 I7P . . . D 2 146.106 164.45 156.221 1 195.06 ? C2 I7P 702 A 1 
HETATM 3 C C3 I7P . . . D 2 147.53 164.104 155.813 1 195.02 ? C3 I7P 702 A 1 
HETATM 4 C C4 I7P . . . D 2 148.441 164.127 157.033 1 194.97 ? C4 I7P 702 A 1 
HETATM 5 C C5 I7P . . . D 2 148.45 165.567 157.582 1 195.11 ? C5 I7P 702 A 1 
HETATM 6 C C6 I7P . . . D 2 147.031 166.156 157.799 1 195.19 ? C6 I7P 702 A 1 
HETATM 7 O O11 I7P . . . D 2 144.923 166.523 156.781 1 195.34 ? O11 I7P 702 A 1 
HETATM 8 O O12 I7P . . . D 2 145.707 163.747 157.354 1 195.21 ? O12 I7P 702 A 1 
HETATM 9 O O13 I7P . . . D 2 147.603 162.868 155.164 1 195.26 ? O13 I7P 702 A 1 
HETATM 10 O O14 I7P . . . D 2 149.743 163.837 156.629 1 195.4 ? O14 I7P 702 A 1 
HETATM 11 O O15 I7P . . . D 2 149.114 165.558 158.811 1 195.67 ? O15 I7P 702 A 1 
HETATM 12 O O16 I7P . . . D 2 147.242 167.519 157.95 1 195.8 ? O16 I7P 702 A 1 
HETATM 13 O O21 I7P . . . D 2 145.331 168.369 154.945 1 195.53 ? O21 I7P 702 A 1 
HETATM 14 O O22 I7P . . . D 2 146.562 161.282 157.711 1 194.15 ? O22 I7P 702 A 1 
HETATM 15 O O23 I7P . . . D 2 147.629 164.193 152.891 1 194.31 ? O23 I7P 702 A 1 
HETATM 16 O O24 I7P . . . D 2 150.637 161.359 156.295 1 194.58 ? O24 I7P 702 A 1 
HETATM 17 O O25 I7P . . . D 2 151.115 166.99 157.887 1 194.02 ? O25 I7P 702 A 1 
HETATM 18 O O26 I7P . . . D 2 146.962 169.842 159.019 1 194.97 ? O26 I7P 702 A 1 
HETATM 19 O O31 I7P . . . D 2 143.472 166.793 154.643 1 194.88 ? O31 I7P 702 A 1 
HETATM 20 O O32 I7P . . . D 2 144.868 161.628 155.959 1 194.45 ? O32 I7P 702 A 1 
HETATM 21 O O33 I7P . . . D 2 145.919 162.495 153.25 1 193.69 ? O33 I7P 702 A 1 
HETATM 22 O O34 I7P . . . D 2 150.018 162.097 158.57 1 194.6 ? O34 I7P 702 A 1 
HETATM 23 O O35 I7P . . . D 2 151.535 164.943 159.435 1 194.25 ? O35 I7P 702 A 1 
HETATM 24 O O36 I7P . . . D 2 147.079 167.774 160.564 1 194.87 ? O36 I7P 702 A 1 
HETATM 25 O O41 I7P . . . D 2 143.313 168.567 156.428 1 195.2 ? O41 I7P 702 A 1 
HETATM 26 O O42 I7P . . . D 2 144.225 161.915 158.362 1 194.99 ? O42 I7P 702 A 1 
HETATM 27 O O43 I7P . . . D 2 148.256 161.694 152.897 1 193.29 ? O43 I7P 702 A 1 
HETATM 28 O O44 I7P . . . D 2 152.089 163.032 157.346 1 194.66 ? O44 I7P 702 A 1 
HETATM 29 O O45 I7P . . . D 2 150.615 166.982 160.305 1 194.71 ? O45 I7P 702 A 1 
HETATM 30 O O46 I7P . . . D 2 145.074 168.259 159.149 1 195.1 ? O46 I7P 702 A 1 
HETATM 31 O O55 I7P . . . D 2 152.075 169.01 159.866 1 194.06 ? O55 I7P 702 A 1 
HETATM 32 O O65 I7P . . . D 2 149.752 169.201 159.284 1 195.36 ? O65 I7P 702 A 1 
HETATM 33 O O75 I7P . . . D 2 150.319 169.175 161.714 1 193.31 ? O75 I7P 702 A 1 
HETATM 34 P PA1 I7P . . . D 2 144.234 167.604 155.716 1 195.2 ? PA1 I7P 702 A 1 
HETATM 35 P PA2 I7P . . . D 2 145.315 162.115 157.352 1 195.77 ? PA2 I7P 702 A 1 
HETATM 36 P PA3 I7P . . . D 2 147.407 162.797 153.501 1 194.89 ? PA3 I7P 702 A 1 
HETATM 37 P PA4 I7P . . . D 2 150.665 162.563 157.244 1 195.1 ? PA4 I7P 702 A 1 
HETATM 38 P PA5 I7P . . . D 2 150.655 166.051 159 1 195.56 ? PA5 I7P 702 A 1 
HETATM 39 P PA6 I7P . . . D 2 146.556 168.371 159.24 1 195.53 ? PA6 I7P 702 A 1 
HETATM 40 P PB5 I7P . . . D 2 150.672 168.569 160.377 1 195.24 ? PB5 I7P 702 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           40 
#