data_9IX3 # _model_server_result.job_id MtqRVNN5ZKbVd7hthmGbkw _model_server_result.datetime_utc '2025-06-26 21:44:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ix3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 9IX3 # _exptl.entry_id 9IX3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.532 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-[2-(cyclopropylcarbonylamino)pyridin-4-yl]oxy-2,3-dimethyl-phenyl]-1-(4-fluorophenyl)-2-oxidanylidene-pyridine-3-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 130.99 _cell.angle_gamma 90 _cell.entry_id 9IX3 _cell.length_a 144.2 _cell.length_b 54.161 _cell.length_c 104.034 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C29 H25 F N4 O4' _chem_comp.formula_weight 512.532 _chem_comp.id A1EAA _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-[2-(cyclopropylcarbonylamino)pyridin-4-yl]oxy-2,3-dimethyl-phenyl]-1-(4-fluorophenyl)-2-oxidanylidene-pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Ripk3-IN-1 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 A1EAA sing 1 n n C3 C1 A1EAA sing 2 n n C2 C1 A1EAA sing 3 n n C1 C4 A1EAA sing 4 n n O1 C4 A1EAA doub 5 n n C4 N1 A1EAA sing 6 n n N1 C5 A1EAA sing 7 n n C9 C5 A1EAA doub 8 n y C9 C8 A1EAA sing 9 n y C5 N2 A1EAA sing 10 n y O2 C8 A1EAA sing 11 n n O2 C10 A1EAA sing 12 n n C8 C7 A1EAA doub 13 n y N2 C6 A1EAA doub 14 n y C16 C15 A1EAA sing 15 n n C10 C15 A1EAA doub 16 n y C10 C11 A1EAA sing 17 n y C7 C6 A1EAA sing 18 n y C15 C14 A1EAA sing 19 n y C11 C12 A1EAA doub 20 n y C14 C17 A1EAA sing 21 n n C14 C13 A1EAA doub 22 n y C12 C13 A1EAA sing 23 n y C13 N3 A1EAA sing 24 n n O3 C18 A1EAA doub 25 n n N3 C18 A1EAA sing 26 n n C18 C19 A1EAA sing 27 n n C19 C23 A1EAA doub 28 n n C19 C20 A1EAA sing 29 n n C23 C22 A1EAA sing 30 n n O4 C20 A1EAA doub 31 n n C20 N4 A1EAA sing 32 n n C22 C21 A1EAA doub 33 n n N4 C21 A1EAA sing 34 n n N4 C24 A1EAA sing 35 n n C24 C29 A1EAA doub 36 n y C24 C25 A1EAA sing 37 n y C29 C28 A1EAA sing 38 n y C25 C26 A1EAA doub 39 n y C28 C27 A1EAA doub 40 n y C26 C27 A1EAA sing 41 n y C27 F1 A1EAA sing 42 n n N1 H1 A1EAA sing 43 n n N3 H2 A1EAA sing 44 n n C6 H3 A1EAA sing 45 n n C7 H4 A1EAA sing 46 n n C17 H5 A1EAA sing 47 n n C17 H6 A1EAA sing 48 n n C17 H7 A1EAA sing 49 n n C21 H8 A1EAA sing 50 n n C22 H9 A1EAA sing 51 n n C26 H10 A1EAA sing 52 n n C28 H11 A1EAA sing 53 n n C1 H12 A1EAA sing 54 n n C11 H13 A1EAA sing 55 n n C12 H14 A1EAA sing 56 n n C16 H15 A1EAA sing 57 n n C16 H16 A1EAA sing 58 n n C16 H17 A1EAA sing 59 n n C2 H18 A1EAA sing 60 n n C2 H19 A1EAA sing 61 n n C23 H20 A1EAA sing 62 n n C25 H21 A1EAA sing 63 n n C29 H22 A1EAA sing 64 n n C3 H23 A1EAA sing 65 n n C3 H24 A1EAA sing 66 n n C9 H25 A1EAA sing 67 n n # _atom_sites.entry_id 9IX3 _atom_sites.fract_transf_matrix[1][1] 0.006935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006026 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1EAA A 1 401 401 A1EAA LIG . D 2 A1EAA B 1 401 401 A1EAA LIG . E 3 HOH A 1 501 16 HOH HOH . E 3 HOH A 2 502 10 HOH HOH . E 3 HOH A 3 503 14 HOH HOH . E 3 HOH A 4 504 1 HOH HOH . E 3 HOH A 5 505 8 HOH HOH . E 3 HOH A 6 506 2 HOH HOH . E 3 HOH A 7 507 54 HOH HOH . E 3 HOH A 8 508 61 HOH HOH . E 3 HOH A 9 509 11 HOH HOH . E 3 HOH A 10 510 39 HOH HOH . E 3 HOH A 11 511 26 HOH HOH . E 3 HOH A 12 512 34 HOH HOH . E 3 HOH A 13 513 25 HOH HOH . E 3 HOH A 14 514 42 HOH HOH . E 3 HOH A 15 515 45 HOH HOH . E 3 HOH A 16 516 65 HOH HOH . E 3 HOH A 17 517 9 HOH HOH . E 3 HOH A 18 518 23 HOH HOH . E 3 HOH A 19 519 32 HOH HOH . E 3 HOH A 20 520 50 HOH HOH . E 3 HOH A 21 521 41 HOH HOH . E 3 HOH A 22 522 27 HOH HOH . E 3 HOH A 23 523 48 HOH HOH . E 3 HOH A 24 524 44 HOH HOH . E 3 HOH A 25 525 58 HOH HOH . E 3 HOH A 26 526 36 HOH HOH . E 3 HOH A 27 527 38 HOH HOH . E 3 HOH A 28 528 49 HOH HOH . E 3 HOH A 29 529 20 HOH HOH . E 3 HOH A 30 530 46 HOH HOH . E 3 HOH A 31 531 33 HOH HOH . E 3 HOH A 32 532 28 HOH HOH . E 3 HOH A 33 533 3 HOH HOH . E 3 HOH A 34 534 12 HOH HOH . E 3 HOH A 35 535 30 HOH HOH . E 3 HOH A 36 536 59 HOH HOH . E 3 HOH A 37 537 63 HOH HOH . E 3 HOH A 38 538 6 HOH HOH . E 3 HOH A 39 539 24 HOH HOH . E 3 HOH A 40 540 29 HOH HOH . E 3 HOH A 41 541 64 HOH HOH . F 3 HOH B 1 501 17 HOH HOH . F 3 HOH B 2 502 5 HOH HOH . F 3 HOH B 3 503 62 HOH HOH . F 3 HOH B 4 504 22 HOH HOH . F 3 HOH B 5 505 4 HOH HOH . F 3 HOH B 6 506 43 HOH HOH . F 3 HOH B 7 507 15 HOH HOH . F 3 HOH B 8 508 7 HOH HOH . F 3 HOH B 9 509 47 HOH HOH . F 3 HOH B 10 510 18 HOH HOH . F 3 HOH B 11 511 53 HOH HOH . F 3 HOH B 12 512 37 HOH HOH . F 3 HOH B 13 513 60 HOH HOH . F 3 HOH B 14 514 13 HOH HOH . F 3 HOH B 15 515 35 HOH HOH . F 3 HOH B 16 516 19 HOH HOH . F 3 HOH B 17 517 57 HOH HOH . F 3 HOH B 18 518 56 HOH HOH . F 3 HOH B 19 519 31 HOH HOH . F 3 HOH B 20 520 51 HOH HOH . F 3 HOH B 21 521 21 HOH HOH . F 3 HOH B 22 522 40 HOH HOH . F 3 HOH B 23 523 52 HOH HOH . F 3 HOH B 24 524 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1EAA . . . D 2 62.969 28.463 31.506 1 36.46 ? N1 A1EAA 401 B 1 HETATM 2 N N3 A1EAA . . . D 2 64.699 38.178 30.564 1 37.37 ? N3 A1EAA 401 B 1 HETATM 3 C C4 A1EAA . . . D 2 63.873 27.823 32.288 1 37.19 ? C4 A1EAA 401 B 1 HETATM 4 C C5 A1EAA . . . D 2 62.809 29.847 31.321 1 33.99 ? C5 A1EAA 401 B 1 HETATM 5 C C6 A1EAA . . . D 2 61.825 31.473 30.032 1 31.47 ? C6 A1EAA 401 B 1 HETATM 6 C C7 A1EAA . . . D 2 62.38 32.486 30.79 1 32.01 ? C7 A1EAA 401 B 1 HETATM 7 C C8 A1EAA . . . D 2 63.16 32.143 31.87 1 35.35 ? C8 A1EAA 401 B 1 HETATM 8 C C10 A1EAA . . . D 2 63.983 34.374 32.149 1 34.08 ? C10 A1EAA 401 B 1 HETATM 9 C C13 A1EAA . . . D 2 64.455 36.89 31.118 1 40.52 ? C13 A1EAA 401 B 1 HETATM 10 C C15 A1EAA . . . D 2 63.071 35.388 32.402 1 33.16 ? C15 A1EAA 401 B 1 HETATM 11 C C17 A1EAA . . . D 2 62.309 37.764 32.141 1 32.13 ? C17 A1EAA 401 B 1 HETATM 12 C C20 A1EAA . . . D 2 65.757 40.177 28.972 1 46.23 ? C20 A1EAA 401 B 1 HETATM 13 C C21 A1EAA . . . D 2 66.156 42.526 28.552 1 44.23 ? C21 A1EAA 401 B 1 HETATM 14 C C22 A1EAA . . . D 2 65.741 42.842 29.831 1 48.79 ? C22 A1EAA 401 B 1 HETATM 15 C C24 A1EAA . . . D 2 66.608 40.916 26.771 1 44.18 ? C24 A1EAA 401 B 1 HETATM 16 C C26 A1EAA . . . D 2 66.198 39.892 24.648 1 39 ? C26 A1EAA 401 B 1 HETATM 17 C C28 A1EAA . . . D 2 68.279 41.021 25.064 1 44.59 ? C28 A1EAA 401 B 1 HETATM 18 C C1 A1EAA . . . D 2 63.765 26.357 32.246 1 36.94 ? C1 A1EAA 401 B 1 HETATM 19 C C11 A1EAA . . . D 2 65.11 34.603 31.39 1 35.19 ? C11 A1EAA 401 B 1 HETATM 20 C C12 A1EAA . . . D 2 65.343 35.856 30.864 1 41.08 ? C12 A1EAA 401 B 1 HETATM 21 C C14 A1EAA . . . D 2 63.302 36.664 31.875 1 37.26 ? C14 A1EAA 401 B 1 HETATM 22 C C16 A1EAA . . . D 2 61.844 35.118 33.232 1 35.42 ? C16 A1EAA 401 B 1 HETATM 23 C C18 A1EAA . . . D 2 64.917 39.367 31.173 1 44.07 ? C18 A1EAA 401 B 1 HETATM 24 C C19 A1EAA . . . D 2 65.349 40.481 30.271 1 42.33 ? C19 A1EAA 401 B 1 HETATM 25 C C2 A1EAA . . . D 2 65.04 25.57 32.391 1 37.08 ? C2 A1EAA 401 B 1 HETATM 26 C C23 A1EAA . . . D 2 65.334 41.816 30.694 1 46.01 ? C23 A1EAA 401 B 1 HETATM 27 C C25 A1EAA . . . D 2 65.781 40.194 25.929 1 44.84 ? C25 A1EAA 401 B 1 HETATM 28 C C27 A1EAA . . . D 2 67.436 40.315 24.252 1 46.42 ? C27 A1EAA 401 B 1 HETATM 29 C C29 A1EAA . . . D 2 67.859 41.322 26.344 1 46.45 ? C29 A1EAA 401 B 1 HETATM 30 C C3 A1EAA . . . D 2 64.084 25.608 33.512 1 32.2 ? C3 A1EAA 401 B 1 HETATM 31 C C9 A1EAA . . . D 2 63.391 30.814 32.141 1 30.44 ? C9 A1EAA 401 B 1 HETATM 32 F F1 A1EAA . . . D 2 67.85 40.017 22.991 1 54.5 ? F1 A1EAA 401 B 1 HETATM 33 N N2 A1EAA . . . D 2 62.027 30.168 30.283 1 33.32 ? N2 A1EAA 401 B 1 HETATM 34 N N4 A1EAA . . . D 2 66.178 41.221 28.122 1 42.09 ? N4 A1EAA 401 B 1 HETATM 35 O O1 A1EAA . . . D 2 64.72 28.393 32.962 1 43.86 ? O1 A1EAA 401 B 1 HETATM 36 O O2 A1EAA . . . D 2 63.748 33.111 32.676 1 35.37 ? O2 A1EAA 401 B 1 HETATM 37 O O3 A1EAA . . . D 2 64.824 39.537 32.384 1 40.65 ? O3 A1EAA 401 B 1 HETATM 38 O O4 A1EAA . . . D 2 65.805 39.038 28.535 1 40.66 ? O4 A1EAA 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #