data_9IZ2 # _model_server_result.job_id 5VPOEE_KMZWuaOjhKgO6Ow _model_server_result.datetime_utc '2024-12-27 06:28:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9iz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 9IZ2 # _exptl.entry_id 9IZ2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 173.17 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-DIAZENYL-5-OXO-L-NORLEUCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9IZ2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 399 A CYS 399 1_555 D C1C DON . A DON 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc1 A OD1 ASP 70 A ASP 70 1_555 F MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 A OD2 ASP 70 A ASP 70 1_555 F MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 A OE2 GLU 145 A GLU 145 1_555 F MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc4 E MG MG . A MG 602 1_555 I O1G DGT . A DGT 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc5 E MG MG . A MG 602 1_555 I O1B DGT . A DGT 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc6 E MG MG . A MG 602 1_555 I O2A DGT . A DGT 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 F MG MG . A MG 603 1_555 H O3B DAT . A DAT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc8 F MG MG . A MG 603 1_555 J O33 5ZL . A 5ZL 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc9 G MG MG . A MG 604 1_555 H O2B DAT . A DAT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc10 G MG MG . A MG 604 1_555 J O32 5ZL . A 5ZL 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc11 J O11 5ZL . A 5ZL 607 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc12 J O15 5ZL . A 5ZL 607 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc13 J O17 5ZL . A 5ZL 607 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? # _chem_comp.formula 'C6 H11 N3 O3' _chem_comp.formula_weight 173.17 _chem_comp.id DON _chem_comp.mon_nstd_flag n _chem_comp.name 6-DIAZENYL-5-OXO-L-NORLEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms '(S)-2-AMINO-6-DIAZENYL-5-OXOHEXANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C DON doub 226 n n C OXT DON sing 227 n n C CA DON sing 228 n n OXT HXT DON sing 229 n n CA N DON sing 230 n n CA CB DON sing 231 n n CA HA DON sing 232 n n N H DON sing 233 n n N H2 DON sing 234 n n CB C1E DON sing 235 n n CB HB2 DON sing 236 n n CB HB3 DON sing 237 n n C1E C1D DON sing 238 n n C1E H1E1 DON sing 239 n n C1E H1E2 DON sing 240 n n C1D O1J DON doub 241 n n C1D C1C DON sing 242 n n C1C N1B DON sing 243 n n C1C H1C1 DON sing 244 n n C1C H1C2 DON sing 245 n n N1B N1A DON doub 246 n n N1A H1A1 DON sing 247 n n # _atom_sites.entry_id 9IZ2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 DON A 1 601 702 DON DON . E 3 MG A 1 602 703 MG MG . F 3 MG A 1 603 704 MG MG . G 3 MG A 1 604 706 MG MG . H 4 DAT A 1 605 707 DAT DAT . I 5 DGT A 1 606 709 DGT DGT . J 6 5ZL A 1 607 710 5ZL LIG . K 3 MG B 1 601 705 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O DON . . . D 2 92.644 129.008 157.017 1 42.98 ? O DON 601 A 1 HETATM 2 C C DON . . . D 2 92.407 129.104 158.224 1 42.93 ? C DON 601 A 1 HETATM 3 O OXT DON . . . D 2 91.188 129.583 158.578 1 42.22 ? OXT DON 601 A 1 HETATM 4 C CA DON . . . D 2 93.31 128.748 159.399 1 43.76 ? CA DON 601 A 1 HETATM 5 N N DON . . . D 2 94.304 127.757 159.071 1 41.98 ? N DON 601 A 1 HETATM 6 C CB DON . . . D 2 93.951 130.043 159.921 1 42 ? CB DON 601 A 1 HETATM 7 C C1E DON . . . D 2 94.617 130.841 158.823 1 36.8 ? C1E DON 601 A 1 HETATM 8 C C1D DON . . . D 2 95.536 131.895 159.359 1 36.71 ? C1D DON 601 A 1 HETATM 9 O O1J DON . . . D 2 96.621 132.179 158.855 1 35.37 ? O1J DON 601 A 1 HETATM 10 C C1C DON . . . D 2 95.033 132.608 160.598 1 43.78 ? C1C DON 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #