data_9IZG
#
_model_server_result.job_id            rnEKbVNSg0sW0CGiUuo3oA 
_model_server_result.datetime_utc      '2025-01-09 09:04:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9izg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    9IZG 
#
_exptl.entry_id    9IZG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              436.52 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9IZG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9IZG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 317 R CYS 188 1_555 C SG CYS 324 R CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 C SG CYS 413 R CYS 284 1_555 C SG CYS 416 R CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C21 H41 O7 P' 
_chem_comp.formula_weight    436.52 
_chem_comp.id                NKP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '18:1 LPA;oleoyl lysophosphatidic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA PAC NKP sing 237 n n 
OAB PAC NKP sing 238 n n 
PAC OAD NKP doub 239 n n 
PAC OAF NKP sing 240 n n 
OAE CAK NKP doub 241 n n 
OAF CAG NKP sing 242 n n 
CAG CAH NKP sing 243 n n 
CAH CAI NKP sing 244 n n 
CAH OBC NKP sing 245 n n 
CAI OAJ NKP sing 246 n n 
OAJ CAK NKP sing 247 n n 
CAK CAL NKP sing 248 n n 
CAL CAM NKP sing 249 n n 
CAM CAN NKP sing 250 n n 
CAN CAO NKP sing 251 n n 
CAO CAP NKP sing 252 n n 
CAP CAQ NKP sing 253 n n 
CAQ CAR NKP sing 254 n n 
CAR CAS NKP sing 255 n n 
CAS CAT NKP doub 256 n n 
CAT CAU NKP sing 257 n n 
CAU CAV NKP sing 258 n n 
CAV CAW NKP sing 259 n n 
CAW CAX NKP sing 260 n n 
CAX CAY NKP sing 261 n n 
CAY CAZ NKP sing 262 n n 
CAZ CBA NKP sing 263 n n 
CBA CBB NKP sing 264 n n 
CAG HAG NKP sing 265 n n 
CAG HAGA NKP sing 266 n n 
CAH HAH NKP sing 267 n n 
CAI HAI NKP sing 268 n n 
CAI HAIA NKP sing 269 n n 
CAL HAL NKP sing 270 n n 
CAL HALA NKP sing 271 n n 
CAM HAM NKP sing 272 n n 
CAM HAMA NKP sing 273 n n 
CAN HAN NKP sing 274 n n 
CAN HANA NKP sing 275 n n 
CAO HAO NKP sing 276 n n 
CAO HAOA NKP sing 277 e n 
CAP HAP NKP sing 278 n n 
CAP HAPA NKP sing 279 n n 
CAQ HAQ NKP sing 280 n n 
CAQ HAQA NKP sing 281 n n 
CAR HAR NKP sing 282 n n 
CAR HARA NKP sing 283 n n 
CAS HAS NKP sing 284 n n 
CAT HAT NKP sing 285 n n 
CAU HAU NKP sing 286 n n 
CAU HAUA NKP sing 287 n n 
CAV HAV NKP sing 288 n n 
CAV HAVA NKP sing 289 n n 
CAW HAW NKP sing 290 n n 
CAW HAWA NKP sing 291 n n 
CAX HAX NKP sing 292 n n 
CAX HAXA NKP sing 293 n n 
CAY HAY NKP sing 294 n n 
CAY HAYA NKP sing 295 n n 
CAZ HAZ NKP sing 296 n n 
CAZ HAZA NKP sing 297 n n 
CBA HBA NKP sing 298 n n 
CBA HBAA NKP sing 299 n n 
CBB HBB NKP sing 300 n n 
CBB HBBA NKP sing 301 n n 
CBB HBBB NKP sing 302 n n 
OBC HOBC NKP sing 303 n n 
OAA HOAA NKP sing 304 n n 
OAB HOAB NKP sing 305 n n 
#
_atom_sites.entry_id                     9IZG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NKP R 1 601 401 NKP NKP . 
G 7 HOH R 1 701 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA NKP . . . F 6 85.26 112.915 59.901 1 49.88 ? OAA NKP 601 R 1 
HETATM 2 O OAB NKP . . . F 6 86.35 112.586 57.652 1 54.21 ? OAB NKP 601 R 1 
HETATM 3 P PAC NKP . . . F 6 85.711 111.92 58.852 1 59.06 ? PAC NKP 601 R 1 
HETATM 4 O OAD NKP . . . F 6 84.633 110.931 58.473 1 56.34 ? OAD NKP 601 R 1 
HETATM 5 O OAE NKP . . . F 6 89.91 108.781 63.47 1 49.23 ? OAE NKP 601 R 1 
HETATM 6 O OAF NKP . . . F 6 86.876 111.039 59.557 1 50.65 ? OAF NKP 601 R 1 
HETATM 7 C CAG NKP . . . F 6 86.558 110.328 60.771 1 48.42 ? CAG NKP 601 R 1 
HETATM 8 C CAH NKP . . . F 6 87.573 109.23 60.984 1 46.07 ? CAH NKP 601 R 1 
HETATM 9 C CAI NKP . . . F 6 88.984 109.74 61.151 1 45.89 ? CAI NKP 601 R 1 
HETATM 10 O OAJ NKP . . . F 6 89.89 108.617 61.239 1 50.44 ? OAJ NKP 601 R 1 
HETATM 11 C CAK NKP . . . F 6 90.276 108.243 62.459 1 48.73 ? CAK NKP 601 R 1 
HETATM 12 C CAL NKP . . . F 6 91.206 107.067 62.4 1 45.71 ? CAL NKP 601 R 1 
HETATM 13 C CAM NKP . . . F 6 92.679 107.45 62.337 1 40.68 ? CAM NKP 601 R 1 
HETATM 14 C CAN NKP . . . F 6 93.136 108.245 63.545 1 38.68 ? CAN NKP 601 R 1 
HETATM 15 C CAO NKP . . . F 6 94.644 108.357 63.669 1 44.44 ? CAO NKP 601 R 1 
HETATM 16 C CAP NKP . . . F 6 95.105 109.221 64.83 1 48.59 ? CAP NKP 601 R 1 
HETATM 17 C CAQ NKP . . . F 6 96.565 109.02 65.191 1 47.14 ? CAQ NKP 601 R 1 
HETATM 18 C CAR NKP . . . F 6 96.882 107.619 65.707 1 42.64 ? CAR NKP 601 R 1 
HETATM 19 C CAS NKP . . . F 6 96.539 107.42 67.151 1 45.66 ? CAS NKP 601 R 1 
HETATM 20 C CAT NKP . . . F 6 95.435 106.894 67.656 1 47.08 ? CAT NKP 601 R 1 
HETATM 21 C CAU NKP . . . F 6 94.22 106.432 66.913 1 42.83 ? CAU NKP 601 R 1 
HETATM 22 C CAV NKP . . . F 6 94.139 104.918 66.729 1 41.7 ? CAV NKP 601 R 1 
HETATM 23 C CAW NKP . . . F 6 95.101 104.37 65.689 1 44.33 ? CAW NKP 601 R 1 
HETATM 24 C CAX NKP . . . F 6 94.88 102.906 65.356 1 43.93 ? CAX NKP 601 R 1 
HETATM 25 C CAY NKP . . . F 6 93.476 102.595 64.869 1 42.61 ? CAY NKP 601 R 1 
HETATM 26 C CAZ NKP . . . F 6 93.085 103.313 63.589 1 43.62 ? CAZ NKP 601 R 1 
HETATM 27 C CBA NKP . . . F 6 93.905 102.919 62.376 1 44.26 ? CBA NKP 601 R 1 
HETATM 28 C CBB NKP . . . F 6 93.396 103.541 61.1 1 42.85 ? CBB NKP 601 R 1 
HETATM 29 O OBC NKP . . . F 6 87.203 108.473 62.138 1 46.06 ? OBC NKP 601 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           29 
#