data_9J0S
#
_model_server_result.job_id            7yx7lYR7IXLD3pWbvAyXeA 
_model_server_result.datetime_utc      '2025-08-31 08:25:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9j0s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    9J0S 
#
_exptl.entry_id    9J0S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9J0S 
_cell.length_a            102.15 
_cell.length_b            144.774 
_cell.length_c            150.239 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9J0S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     9J0S 
_atom_sites.fract_transf_matrix[1][1]    0.00979 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006907 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 501 501 NAP NDP . 
F 2 NAP B 1 501 501 NAP NDP . 
G 2 NAP C 1 501 501 NAP NDP . 
H 2 NAP D 1 501 501 NAP NDP . 
I 3 HOH A 1 601 32 HOH HOH . 
I 3 HOH A 2 602 406 HOH HOH . 
I 3 HOH A 3 603 605 HOH HOH . 
I 3 HOH A 4 604 38 HOH HOH . 
I 3 HOH A 5 605 619 HOH HOH . 
I 3 HOH A 6 606 51 HOH HOH . 
I 3 HOH A 7 607 284 HOH HOH . 
I 3 HOH A 8 608 644 HOH HOH . 
I 3 HOH A 9 609 513 HOH HOH . 
I 3 HOH A 10 610 380 HOH HOH . 
I 3 HOH A 11 611 322 HOH HOH . 
J 3 HOH B 1 601 4 HOH HOH . 
J 3 HOH B 2 602 39 HOH HOH . 
J 3 HOH B 3 603 116 HOH HOH . 
J 3 HOH B 4 604 58 HOH HOH . 
J 3 HOH B 5 605 16 HOH HOH . 
J 3 HOH B 6 606 26 HOH HOH . 
J 3 HOH B 7 607 814 HOH HOH . 
J 3 HOH B 8 608 77 HOH HOH . 
J 3 HOH B 9 609 112 HOH HOH . 
J 3 HOH B 10 610 969 HOH HOH . 
J 3 HOH B 11 611 12 HOH HOH . 
J 3 HOH B 12 612 17 HOH HOH . 
J 3 HOH B 13 613 47 HOH HOH . 
J 3 HOH B 14 614 78 HOH HOH . 
J 3 HOH B 15 615 101 HOH HOH . 
J 3 HOH B 16 616 45 HOH HOH . 
J 3 HOH B 17 617 819 HOH HOH . 
J 3 HOH B 18 618 601 HOH HOH . 
J 3 HOH B 19 619 226 HOH HOH . 
J 3 HOH B 20 620 175 HOH HOH . 
J 3 HOH B 21 621 564 HOH HOH . 
J 3 HOH B 22 622 768 HOH HOH . 
K 3 HOH C 1 601 785 HOH HOH . 
K 3 HOH C 2 602 35 HOH HOH . 
K 3 HOH C 3 603 769 HOH HOH . 
K 3 HOH C 4 604 11 HOH HOH . 
K 3 HOH C 5 605 145 HOH HOH . 
K 3 HOH C 6 606 40 HOH HOH . 
K 3 HOH C 7 607 2 HOH HOH . 
K 3 HOH C 8 608 577 HOH HOH . 
K 3 HOH C 9 609 19 HOH HOH . 
K 3 HOH C 10 610 27 HOH HOH . 
K 3 HOH C 11 611 1 HOH HOH . 
K 3 HOH C 12 612 46 HOH HOH . 
K 3 HOH C 13 613 15 HOH HOH . 
K 3 HOH C 14 614 262 HOH HOH . 
K 3 HOH C 15 615 36 HOH HOH . 
K 3 HOH C 16 616 567 HOH HOH . 
K 3 HOH C 17 617 107 HOH HOH . 
K 3 HOH C 18 618 28 HOH HOH . 
K 3 HOH C 19 619 54 HOH HOH . 
K 3 HOH C 20 620 431 HOH HOH . 
K 3 HOH C 21 621 42 HOH HOH . 
K 3 HOH C 22 622 24 HOH HOH . 
K 3 HOH C 23 623 48 HOH HOH . 
K 3 HOH C 24 624 73 HOH HOH . 
K 3 HOH C 25 625 67 HOH HOH . 
L 3 HOH D 1 601 72 HOH HOH . 
L 3 HOH D 2 602 750 HOH HOH . 
L 3 HOH D 3 603 722 HOH HOH . 
L 3 HOH D 4 604 9 HOH HOH . 
L 3 HOH D 5 605 21 HOH HOH . 
L 3 HOH D 6 606 710 HOH HOH . 
L 3 HOH D 7 607 159 HOH HOH . 
L 3 HOH D 8 608 43 HOH HOH . 
L 3 HOH D 9 609 608 HOH HOH . 
L 3 HOH D 10 610 64 HOH HOH . 
L 3 HOH D 11 611 852 HOH HOH . 
L 3 HOH D 12 612 931 HOH HOH . 
L 3 HOH D 13 613 59 HOH HOH . 
L 3 HOH D 14 614 597 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . G 2 0.045 -32.729 14.02 1 130.21 ? PA NAP 501 C 1 
HETATM 2 O O1A NAP . . . G 2 0.79 -31.472 13.733 1 93.52 ? O1A NAP 501 C 1 
HETATM 3 O O2A NAP . . . G 2 -1.127 -32.745 14.959 1 112.61 ? O2A NAP 501 C 1 
HETATM 4 O O5B NAP . . . G 2 -0.375 -33.441 12.599 1 104.36 ? O5B NAP 501 C 1 
HETATM 5 C C5B NAP . . . G 2 -1.743 -33.217 12.519 1 84.79 ? C5B NAP 501 C 1 
HETATM 6 C C4B NAP . . . G 2 -2.264 -33.714 11.194 1 76.07 ? C4B NAP 501 C 1 
HETATM 7 O O4B NAP . . . G 2 -1.206 -33.878 10.24 1 88.88 ? O4B NAP 501 C 1 
HETATM 8 C C3B NAP . . . G 2 -2.917 -35.08 11.461 1 79.13 ? C3B NAP 501 C 1 
HETATM 9 O O3B NAP . . . G 2 -4.068 -35.192 10.68 1 76.25 ? O3B NAP 501 C 1 
HETATM 10 C C2B NAP . . . G 2 -1.841 -36.04 10.911 1 81.08 ? C2B NAP 501 C 1 
HETATM 11 O O2B NAP . . . G 2 -2.324 -37.228 10.562 1 87.4 ? O2B NAP 501 C 1 
HETATM 12 C C1B NAP . . . G 2 -1.406 -35.171 9.675 1 76.37 ? C1B NAP 501 C 1 
HETATM 13 N N9A NAP . . . G 2 -0.151 -35.579 9.001 1 67.13 ? N9A NAP 501 C 1 
HETATM 14 C C8A NAP . . . G 2 0.99 -36.205 9.543 1 71.85 ? C8A NAP 501 C 1 
HETATM 15 N N7A NAP . . . G 2 1.965 -36.425 8.628 1 73.96 ? N7A NAP 501 C 1 
HETATM 16 C C5A NAP . . . G 2 1.426 -35.907 7.431 1 68.9 ? C5A NAP 501 C 1 
HETATM 17 C C6A NAP . . . G 2 1.936 -35.828 6.118 1 59.39 ? C6A NAP 501 C 1 
HETATM 18 N N6A NAP . . . G 2 3.19 -36.316 5.825 1 60.38 ? N6A NAP 501 C 1 
HETATM 19 N N1A NAP . . . G 2 1.214 -35.27 5.097 1 57.27 ? N1A NAP 501 C 1 
HETATM 20 C C2A NAP . . . G 2 -0.03 -34.804 5.456 1 55.24 ? C2A NAP 501 C 1 
HETATM 21 N N3A NAP . . . G 2 -0.655 -34.804 6.647 1 70.22 ? N3A NAP 501 C 1 
HETATM 22 C C4A NAP . . . G 2 0.113 -35.376 7.647 1 75.04 ? C4A NAP 501 C 1 
HETATM 23 O O3 NAP . . . G 2 1.223 -33.601 14.759 1 118.19 ? O3 NAP 501 C 1 
HETATM 24 P PN NAP . . . G 2 1.031 -35.139 14.412 1 127.77 ? PN NAP 501 C 1 
HETATM 25 O O1N NAP . . . G 2 -0.199 -35.62 15.075 1 120.91 ? O1N NAP 501 C 1 
HETATM 26 O O2N NAP . . . G 2 1.425 -35.528 13.004 1 95.18 ? O2N NAP 501 C 1 
HETATM 27 O O5D NAP . . . G 2 2.262 -36.008 15.346 1 132.5 ? O5D NAP 501 C 1 
HETATM 28 C C5D NAP . . . G 2 3.281 -35.104 15.575 1 120.53 ? C5D NAP 501 C 1 
HETATM 29 C C4D NAP . . . G 2 3.254 -34.695 17.041 1 128.85 ? C4D NAP 501 C 1 
HETATM 30 O O4D NAP . . . G 2 4.45 -35.102 17.718 1 134.31 ? O4D NAP 501 C 1 
HETATM 31 C C3D NAP . . . G 2 3.26 -33.135 17.123 1 127.78 ? C3D NAP 501 C 1 
HETATM 32 O O3D NAP . . . G 2 1.971 -32.699 17.419 1 114 ? O3D NAP 501 C 1 
HETATM 33 C C2D NAP . . . G 2 4.235 -32.841 18.281 1 130.4 ? C2D NAP 501 C 1 
HETATM 34 O O2D NAP . . . G 2 3.663 -32.069 19.289 1 117.44 ? O2D NAP 501 C 1 
HETATM 35 C C1D NAP . . . G 2 4.496 -34.269 18.852 1 128.12 ? C1D NAP 501 C 1 
HETATM 36 N N1N NAP . . . G 2 5.821 -34.331 19.505 1 114.66 ? N1N NAP 501 C 1 
HETATM 37 C C2N NAP . . . G 2 6.337 -35.548 19.893 1 115.79 ? C2N NAP 501 C 1 
HETATM 38 C C3N NAP . . . G 2 7.637 -35.652 20.279 1 125.3 ? C3N NAP 501 C 1 
HETATM 39 C C7N NAP . . . G 2 8.095 -36.975 20.676 1 123.4 ? C7N NAP 501 C 1 
HETATM 40 O O7N NAP . . . G 2 7.356 -37.946 20.88 1 110.72 ? O7N NAP 501 C 1 
HETATM 41 N N7N NAP . . . G 2 9.462 -37.134 20.831 1 119.02 ? N7N NAP 501 C 1 
HETATM 42 C C4N NAP . . . G 2 8.56 -34.483 20.296 1 119.25 ? C4N NAP 501 C 1 
HETATM 43 C C5N NAP . . . G 2 7.836 -33.198 20.137 1 115.53 ? C5N NAP 501 C 1 
HETATM 44 C C6N NAP . . . G 2 6.554 -33.153 19.763 1 117.05 ? C6N NAP 501 C 1 
HETATM 45 P P2B NAP . . . G 2 -2.016 -38.457 11.901 1 87.3 ? P2B NAP 501 C 1 
HETATM 46 O O1X NAP . . . G 2 -2.67 -39.623 11.228 1 81.69 ? O1X NAP 501 C 1 
HETATM 47 O O2X NAP . . . G 2 -0.488 -38.471 12.009 1 99.75 ? O2X NAP 501 C 1 
HETATM 48 O O3X NAP . . . G 2 -2.777 -37.776 13.003 1 80.08 ? O3X NAP 501 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           367 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#