data_9J0S
#
_model_server_result.job_id            JSppYVtFPEgUtIphipMsUg 
_model_server_result.datetime_utc      '2025-09-01 01:38:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9j0s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    9J0S 
#
_exptl.entry_id    9J0S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9J0S 
_cell.length_a            102.15 
_cell.length_b            144.774 
_cell.length_c            150.239 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9J0S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     9J0S 
_atom_sites.fract_transf_matrix[1][1]    0.00979 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006907 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 501 501 NAP NDP . 
F 2 NAP B 1 501 501 NAP NDP . 
G 2 NAP C 1 501 501 NAP NDP . 
H 2 NAP D 1 501 501 NAP NDP . 
I 3 HOH A 1 601 32 HOH HOH . 
I 3 HOH A 2 602 406 HOH HOH . 
I 3 HOH A 3 603 605 HOH HOH . 
I 3 HOH A 4 604 38 HOH HOH . 
I 3 HOH A 5 605 619 HOH HOH . 
I 3 HOH A 6 606 51 HOH HOH . 
I 3 HOH A 7 607 284 HOH HOH . 
I 3 HOH A 8 608 644 HOH HOH . 
I 3 HOH A 9 609 513 HOH HOH . 
I 3 HOH A 10 610 380 HOH HOH . 
I 3 HOH A 11 611 322 HOH HOH . 
J 3 HOH B 1 601 4 HOH HOH . 
J 3 HOH B 2 602 39 HOH HOH . 
J 3 HOH B 3 603 116 HOH HOH . 
J 3 HOH B 4 604 58 HOH HOH . 
J 3 HOH B 5 605 16 HOH HOH . 
J 3 HOH B 6 606 26 HOH HOH . 
J 3 HOH B 7 607 814 HOH HOH . 
J 3 HOH B 8 608 77 HOH HOH . 
J 3 HOH B 9 609 112 HOH HOH . 
J 3 HOH B 10 610 969 HOH HOH . 
J 3 HOH B 11 611 12 HOH HOH . 
J 3 HOH B 12 612 17 HOH HOH . 
J 3 HOH B 13 613 47 HOH HOH . 
J 3 HOH B 14 614 78 HOH HOH . 
J 3 HOH B 15 615 101 HOH HOH . 
J 3 HOH B 16 616 45 HOH HOH . 
J 3 HOH B 17 617 819 HOH HOH . 
J 3 HOH B 18 618 601 HOH HOH . 
J 3 HOH B 19 619 226 HOH HOH . 
J 3 HOH B 20 620 175 HOH HOH . 
J 3 HOH B 21 621 564 HOH HOH . 
J 3 HOH B 22 622 768 HOH HOH . 
K 3 HOH C 1 601 785 HOH HOH . 
K 3 HOH C 2 602 35 HOH HOH . 
K 3 HOH C 3 603 769 HOH HOH . 
K 3 HOH C 4 604 11 HOH HOH . 
K 3 HOH C 5 605 145 HOH HOH . 
K 3 HOH C 6 606 40 HOH HOH . 
K 3 HOH C 7 607 2 HOH HOH . 
K 3 HOH C 8 608 577 HOH HOH . 
K 3 HOH C 9 609 19 HOH HOH . 
K 3 HOH C 10 610 27 HOH HOH . 
K 3 HOH C 11 611 1 HOH HOH . 
K 3 HOH C 12 612 46 HOH HOH . 
K 3 HOH C 13 613 15 HOH HOH . 
K 3 HOH C 14 614 262 HOH HOH . 
K 3 HOH C 15 615 36 HOH HOH . 
K 3 HOH C 16 616 567 HOH HOH . 
K 3 HOH C 17 617 107 HOH HOH . 
K 3 HOH C 18 618 28 HOH HOH . 
K 3 HOH C 19 619 54 HOH HOH . 
K 3 HOH C 20 620 431 HOH HOH . 
K 3 HOH C 21 621 42 HOH HOH . 
K 3 HOH C 22 622 24 HOH HOH . 
K 3 HOH C 23 623 48 HOH HOH . 
K 3 HOH C 24 624 73 HOH HOH . 
K 3 HOH C 25 625 67 HOH HOH . 
L 3 HOH D 1 601 72 HOH HOH . 
L 3 HOH D 2 602 750 HOH HOH . 
L 3 HOH D 3 603 722 HOH HOH . 
L 3 HOH D 4 604 9 HOH HOH . 
L 3 HOH D 5 605 21 HOH HOH . 
L 3 HOH D 6 606 710 HOH HOH . 
L 3 HOH D 7 607 159 HOH HOH . 
L 3 HOH D 8 608 43 HOH HOH . 
L 3 HOH D 9 609 608 HOH HOH . 
L 3 HOH D 10 610 64 HOH HOH . 
L 3 HOH D 11 611 852 HOH HOH . 
L 3 HOH D 12 612 931 HOH HOH . 
L 3 HOH D 13 613 59 HOH HOH . 
L 3 HOH D 14 614 597 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . H 2 15.889 -18.793 -14.26 1 79.53 ? PA NAP 501 D 1 
HETATM 2 O O1A NAP . . . H 2 14.884 -19.761 -13.743 1 65.79 ? O1A NAP 501 D 1 
HETATM 3 O O2A NAP . . . H 2 15.473 -17.62 -15.101 1 70.66 ? O2A NAP 501 D 1 
HETATM 4 O O5B NAP . . . H 2 16.77 -18.242 -12.991 1 85.02 ? O5B NAP 501 D 1 
HETATM 5 C C5B NAP . . . H 2 16.264 -16.947 -12.821 1 70.79 ? C5B NAP 501 D 1 
HETATM 6 C C4B NAP . . . H 2 16.825 -16.317 -11.571 1 58.5 ? C4B NAP 501 D 1 
HETATM 7 O O4B NAP . . . H 2 16.888 -17.282 -10.529 1 56.87 ? O4B NAP 501 D 1 
HETATM 8 C C3B NAP . . . H 2 18.226 -15.791 -11.881 1 49.24 ? C3B NAP 501 D 1 
HETATM 9 O O3B NAP . . . H 2 18.452 -14.659 -11.112 1 42.67 ? O3B NAP 501 D 1 
HETATM 10 C C2B NAP . . . H 2 19.11 -16.93 -11.348 1 61.5 ? C2B NAP 501 D 1 
HETATM 11 O O2B NAP . . . H 2 20.311 -16.525 -10.945 1 65.66 ? O2B NAP 501 D 1 
HETATM 12 C C1B NAP . . . H 2 18.243 -17.363 -10.114 1 47.01 ? C1B NAP 501 D 1 
HETATM 13 N N9A NAP . . . H 2 18.471 -18.745 -9.691 1 40.53 ? N9A NAP 501 D 1 
HETATM 14 C C8A NAP . . . H 2 18.844 -19.862 -10.464 1 39.56 ? C8A NAP 501 D 1 
HETATM 15 N N7A NAP . . . H 2 18.949 -20.997 -9.735 1 43.5 ? N7A NAP 501 D 1 
HETATM 16 C C5A NAP . . . H 2 18.62 -20.582 -8.423 1 47.16 ? C5A NAP 501 D 1 
HETATM 17 C C6A NAP . . . H 2 18.541 -21.275 -7.2 1 44.23 ? C6A NAP 501 D 1 
HETATM 18 N N6A NAP . . . H 2 18.816 -22.622 -7.139 1 56.75 ? N6A NAP 501 D 1 
HETATM 19 N N1A NAP . . . H 2 18.193 -20.643 -6.038 1 47.63 ? N1A NAP 501 D 1 
HETATM 20 C C2A NAP . . . H 2 17.929 -19.3 -6.168 1 45.19 ? C2A NAP 501 D 1 
HETATM 21 N N3A NAP . . . H 2 17.96 -18.504 -7.244 1 48.18 ? N3A NAP 501 D 1 
HETATM 22 C C4A NAP . . . H 2 18.318 -19.186 -8.389 1 50.22 ? C4A NAP 501 D 1 
HETATM 23 O O3 NAP . . . H 2 16.727 -19.784 -15.28 1 105.21 ? O3 NAP 501 D 1 
HETATM 24 P PN NAP . . . H 2 18.292 -19.695 -15.025 1 120.73 ? PN NAP 501 D 1 
HETATM 25 O O1N NAP . . . H 2 18.778 -18.361 -15.432 1 108.71 ? O1N NAP 501 D 1 
HETATM 26 O O2N NAP . . . H 2 18.789 -20.44 -13.805 1 83.86 ? O2N NAP 501 D 1 
HETATM 27 O O5D NAP . . . H 2 19.003 -20.686 -16.314 1 135.93 ? O5D NAP 501 D 1 
HETATM 28 C C5D NAP . . . H 2 18.188 -20.521 -17.426 1 121.99 ? C5D NAP 501 D 1 
HETATM 29 C C4D NAP . . . H 2 17.318 -21.768 -17.603 1 120.46 ? C4D NAP 501 D 1 
HETATM 30 O O4D NAP . . . H 2 17.275 -22.202 -18.991 1 125.96 ? O4D NAP 501 D 1 
HETATM 31 C C3D NAP . . . H 2 17.952 -22.948 -16.791 1 125.84 ? C3D NAP 501 D 1 
HETATM 32 O O3D NAP . . . H 2 16.945 -23.55 -16.045 1 108.33 ? O3D NAP 501 D 1 
HETATM 33 C C2D NAP . . . H 2 18.428 -23.866 -17.913 1 126.97 ? C2D NAP 501 D 1 
HETATM 34 O O2D NAP . . . H 2 18.42 -25.216 -17.57 1 121.3 ? O2D NAP 501 D 1 
HETATM 35 C C1D NAP . . . H 2 17.288 -23.611 -18.917 1 127.11 ? C1D NAP 501 D 1 
HETATM 36 N N1N NAP . . . H 2 17.592 -24.235 -20.221 1 117.43 ? N1N NAP 501 D 1 
HETATM 37 C C2N NAP . . . H 2 16.605 -24.945 -20.858 1 113.27 ? C2N NAP 501 D 1 
HETATM 38 C C3N NAP . . . H 2 16.943 -25.895 -21.765 1 108.23 ? C3N NAP 501 D 1 
HETATM 39 C C7N NAP . . . H 2 15.849 -26.605 -22.392 1 96.33 ? C7N NAP 501 D 1 
HETATM 40 O O7N NAP . . . H 2 15.672 -26.679 -23.614 1 96.95 ? O7N NAP 501 D 1 
HETATM 41 N N7N NAP . . . H 2 14.953 -27.241 -21.552 1 88.5 ? N7N NAP 501 D 1 
HETATM 42 C C4N NAP . . . H 2 18.361 -26.19 -22.105 1 101.58 ? C4N NAP 501 D 1 
HETATM 43 C C5N NAP . . . H 2 19.254 -25.072 -21.704 1 90.45 ? C5N NAP 501 D 1 
HETATM 44 C C6N NAP . . . H 2 18.868 -24.152 -20.811 1 102.36 ? C6N NAP 501 D 1 
HETATM 45 P P2B NAP . . . H 2 21.625 -17.112 -12.079 1 42.01 ? P2B NAP 501 D 1 
HETATM 46 O O1X NAP . . . H 2 22.773 -16.503 -11.336 1 48.89 ? O1X NAP 501 D 1 
HETATM 47 O O2X NAP . . . H 2 21.478 -18.636 -12.033 1 32.51 ? O2X NAP 501 D 1 
HETATM 48 O O3X NAP . . . H 2 21.152 -16.409 -13.322 1 56.91 ? O3X NAP 501 D 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           634 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#