data_9J0V
#
_model_server_result.job_id            Kl176ZE2ruOOlsLkHmGUPw 
_model_server_result.datetime_utc      '2024-11-22 14:06:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9j0v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    9J0V 
#
_exptl.entry_id    9J0V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9J0V 
_cell.length_a            37.847 
_cell.length_b            56.226 
_cell.length_c            118.625 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9J0V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             137 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              137 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C4A 
_struct_conn.ptnr2_label_comp_id            PLP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PLP 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.321 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 289 n y 
N1 C6 PLP sing 290 n y 
C2 C2A PLP sing 291 n n 
C2 C3 PLP sing 292 n y 
C2A H2A1 PLP sing 293 n n 
C2A H2A2 PLP sing 294 n n 
C2A H2A3 PLP sing 295 n n 
C3 O3 PLP sing 296 n n 
C3 C4 PLP doub 297 n y 
O3 HO3 PLP sing 298 n n 
C4 C4A PLP sing 299 n n 
C4 C5 PLP sing 300 n y 
C4A O4A PLP doub 301 n n 
C4A H4A PLP sing 302 n n 
C5 C6 PLP doub 303 n y 
C5 C5A PLP sing 304 n n 
C6 H6 PLP sing 305 n n 
C5A O4P PLP sing 306 n n 
C5A H5A1 PLP sing 307 n n 
C5A H5A2 PLP sing 308 n n 
O4P P PLP sing 309 n n 
P O1P PLP doub 310 n n 
P O2P PLP sing 311 n n 
P O3P PLP sing 312 n n 
O2P HOP2 PLP sing 313 n n 
O3P HOP3 PLP sing 314 n n 
#
_atom_sites.entry_id                     9J0V 
_atom_sites.fract_transf_matrix[1][1]    0.026422 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLP A 1 301 301 PLP PLP . 
C 3 PEG A 1 302 305 PEG PEG . 
D 4 GOL A 1 303 306 GOL GOL . 
E 5 HOH A 1 401 76 HOH HOH . 
E 5 HOH A 2 402 45 HOH HOH . 
E 5 HOH A 3 403 10 HOH HOH . 
E 5 HOH A 4 404 16 HOH HOH . 
E 5 HOH A 5 405 67 HOH HOH . 
E 5 HOH A 6 406 11 HOH HOH . 
E 5 HOH A 7 407 100 HOH HOH . 
E 5 HOH A 8 408 24 HOH HOH . 
E 5 HOH A 9 409 71 HOH HOH . 
E 5 HOH A 10 410 12 HOH HOH . 
E 5 HOH A 11 411 4 HOH HOH . 
E 5 HOH A 12 412 103 HOH HOH . 
E 5 HOH A 13 413 3 HOH HOH . 
E 5 HOH A 14 414 29 HOH HOH . 
E 5 HOH A 15 415 92 HOH HOH . 
E 5 HOH A 16 416 31 HOH HOH . 
E 5 HOH A 17 417 78 HOH HOH . 
E 5 HOH A 18 418 54 HOH HOH . 
E 5 HOH A 19 419 75 HOH HOH . 
E 5 HOH A 20 420 18 HOH HOH . 
E 5 HOH A 21 421 66 HOH HOH . 
E 5 HOH A 22 422 9 HOH HOH . 
E 5 HOH A 23 423 68 HOH HOH . 
E 5 HOH A 24 424 64 HOH HOH . 
E 5 HOH A 25 425 40 HOH HOH . 
E 5 HOH A 26 426 55 HOH HOH . 
E 5 HOH A 27 427 26 HOH HOH . 
E 5 HOH A 28 428 22 HOH HOH . 
E 5 HOH A 29 429 96 HOH HOH . 
E 5 HOH A 30 430 42 HOH HOH . 
E 5 HOH A 31 431 14 HOH HOH . 
E 5 HOH A 32 432 5 HOH HOH . 
E 5 HOH A 33 433 6 HOH HOH . 
E 5 HOH A 34 434 37 HOH HOH . 
E 5 HOH A 35 435 97 HOH HOH . 
E 5 HOH A 36 436 46 HOH HOH . 
E 5 HOH A 37 437 86 HOH HOH . 
E 5 HOH A 38 438 49 HOH HOH . 
E 5 HOH A 39 439 19 HOH HOH . 
E 5 HOH A 40 440 13 HOH HOH . 
E 5 HOH A 41 441 7 HOH HOH . 
E 5 HOH A 42 442 2 HOH HOH . 
E 5 HOH A 43 443 33 HOH HOH . 
E 5 HOH A 44 444 28 HOH HOH . 
E 5 HOH A 45 445 35 HOH HOH . 
E 5 HOH A 46 446 8 HOH HOH . 
E 5 HOH A 47 447 56 HOH HOH . 
E 5 HOH A 48 448 34 HOH HOH . 
E 5 HOH A 49 449 1 HOH HOH . 
E 5 HOH A 50 450 87 HOH HOH . 
E 5 HOH A 51 451 70 HOH HOH . 
E 5 HOH A 52 452 41 HOH HOH . 
E 5 HOH A 53 453 89 HOH HOH . 
E 5 HOH A 54 454 62 HOH HOH . 
E 5 HOH A 55 455 73 HOH HOH . 
E 5 HOH A 56 456 36 HOH HOH . 
E 5 HOH A 57 457 107 HOH HOH . 
E 5 HOH A 58 458 61 HOH HOH . 
E 5 HOH A 59 459 74 HOH HOH . 
E 5 HOH A 60 460 60 HOH HOH . 
E 5 HOH A 61 461 15 HOH HOH . 
E 5 HOH A 62 462 21 HOH HOH . 
E 5 HOH A 63 463 30 HOH HOH . 
E 5 HOH A 64 464 23 HOH HOH . 
E 5 HOH A 65 465 25 HOH HOH . 
E 5 HOH A 66 466 20 HOH HOH . 
E 5 HOH A 67 467 104 HOH HOH . 
E 5 HOH A 68 468 99 HOH HOH . 
E 5 HOH A 69 469 52 HOH HOH . 
E 5 HOH A 70 470 98 HOH HOH . 
E 5 HOH A 71 471 82 HOH HOH . 
E 5 HOH A 72 472 101 HOH HOH . 
E 5 HOH A 73 473 27 HOH HOH . 
E 5 HOH A 74 474 44 HOH HOH . 
E 5 HOH A 75 475 94 HOH HOH . 
E 5 HOH A 76 476 47 HOH HOH . 
E 5 HOH A 77 477 38 HOH HOH . 
E 5 HOH A 78 478 59 HOH HOH . 
E 5 HOH A 79 479 72 HOH HOH . 
E 5 HOH A 80 480 77 HOH HOH . 
E 5 HOH A 81 481 102 HOH HOH . 
E 5 HOH A 82 482 95 HOH HOH . 
E 5 HOH A 83 483 93 HOH HOH . 
E 5 HOH A 84 484 69 HOH HOH . 
E 5 HOH A 85 485 79 HOH HOH . 
E 5 HOH A 86 486 108 HOH HOH . 
E 5 HOH A 87 487 81 HOH HOH . 
E 5 HOH A 88 488 53 HOH HOH . 
E 5 HOH A 89 489 90 HOH HOH . 
E 5 HOH A 90 490 105 HOH HOH . 
E 5 HOH A 91 491 58 HOH HOH . 
E 5 HOH A 92 492 91 HOH HOH . 
E 5 HOH A 93 493 84 HOH HOH . 
E 5 HOH A 94 494 88 HOH HOH . 
E 5 HOH A 95 495 80 HOH HOH . 
E 5 HOH A 96 496 51 HOH HOH . 
E 5 HOH A 97 497 106 HOH HOH . 
E 5 HOH A 98 498 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . B 2 11.573 9.241 15.24 1 24.16 ? N1 PLP 301 A 1 
HETATM 2 C C2 PLP . . . B 2 12.224 9.959 14.319 1 21 ? C2 PLP 301 A 1 
HETATM 3 C C2A PLP . . . B 2 12.282 11.436 14.519 1 22.64 ? C2A PLP 301 A 1 
HETATM 4 C C3 PLP . . . B 2 12.908 9.352 13.233 1 28.77 ? C3 PLP 301 A 1 
HETATM 5 O O3 PLP . . . B 2 13.551 10.141 12.33 1 28.69 ? O3 PLP 301 A 1 
HETATM 6 C C4 PLP . . . B 2 12.856 7.967 13.041 1 24.27 ? C4 PLP 301 A 1 
HETATM 7 C C4A PLP . . . B 2 13.469 7.372 11.826 1 28.01 ? C4A PLP 301 A 1 
HETATM 8 C C5 PLP . . . B 2 12.252 7.229 14.07 1 23.29 ? C5 PLP 301 A 1 
HETATM 9 C C6 PLP . . . B 2 11.595 7.893 15.083 1 23.93 ? C6 PLP 301 A 1 
HETATM 10 C C5A PLP . . . B 2 12.205 5.725 14.041 1 24.77 ? C5A PLP 301 A 1 
HETATM 11 O O4P PLP . . . B 2 11.362 5.159 13.028 1 26.43 ? O4P PLP 301 A 1 
HETATM 12 P P PLP . . . B 2 11.605 3.581 12.662 1 26.86 ? P PLP 301 A 1 
HETATM 13 O O1P PLP . . . B 2 13.09 3.402 12.31 1 27.36 ? O1P PLP 301 A 1 
HETATM 14 O O2P PLP . . . B 2 11.232 2.75 13.875 1 24.49 ? O2P PLP 301 A 1 
HETATM 15 O O3P PLP . . . B 2 10.716 3.513 11.463 1 26.06 ? O3P PLP 301 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           15 
#