data_9J0V # _model_server_result.job_id zrM167ZizmHuuaansqOD7Q _model_server_result.datetime_utc '2024-12-26 23:13:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9j0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 9J0V # _exptl.entry_id 9J0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9J0V _cell.length_a 37.847 _cell.length_b 56.226 _cell.length_c 118.625 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9J0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 136 A ILE 136 1_555 A N LLP 137 A LLP 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale2 A C LLP 137 A LLP 137 1_555 A N THR 138 A THR 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 9J0V _atom_sites.fract_transf_matrix[1][1] 0.026422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 301 305 PEG PEG . C 3 GOL A 1 302 306 GOL GOL . D 4 HOH A 1 401 76 HOH HOH . D 4 HOH A 2 402 45 HOH HOH . D 4 HOH A 3 403 10 HOH HOH . D 4 HOH A 4 404 16 HOH HOH . D 4 HOH A 5 405 67 HOH HOH . D 4 HOH A 6 406 11 HOH HOH . D 4 HOH A 7 407 100 HOH HOH . D 4 HOH A 8 408 24 HOH HOH . D 4 HOH A 9 409 71 HOH HOH . D 4 HOH A 10 410 12 HOH HOH . D 4 HOH A 11 411 4 HOH HOH . D 4 HOH A 12 412 103 HOH HOH . D 4 HOH A 13 413 3 HOH HOH . D 4 HOH A 14 414 29 HOH HOH . D 4 HOH A 15 415 92 HOH HOH . D 4 HOH A 16 416 31 HOH HOH . D 4 HOH A 17 417 78 HOH HOH . D 4 HOH A 18 418 54 HOH HOH . D 4 HOH A 19 419 75 HOH HOH . D 4 HOH A 20 420 18 HOH HOH . D 4 HOH A 21 421 66 HOH HOH . D 4 HOH A 22 422 9 HOH HOH . D 4 HOH A 23 423 68 HOH HOH . D 4 HOH A 24 424 64 HOH HOH . D 4 HOH A 25 425 40 HOH HOH . D 4 HOH A 26 426 55 HOH HOH . D 4 HOH A 27 427 26 HOH HOH . D 4 HOH A 28 428 22 HOH HOH . D 4 HOH A 29 429 96 HOH HOH . D 4 HOH A 30 430 42 HOH HOH . D 4 HOH A 31 431 14 HOH HOH . D 4 HOH A 32 432 5 HOH HOH . D 4 HOH A 33 433 6 HOH HOH . D 4 HOH A 34 434 37 HOH HOH . D 4 HOH A 35 435 97 HOH HOH . D 4 HOH A 36 436 46 HOH HOH . D 4 HOH A 37 437 86 HOH HOH . D 4 HOH A 38 438 49 HOH HOH . D 4 HOH A 39 439 19 HOH HOH . D 4 HOH A 40 440 13 HOH HOH . D 4 HOH A 41 441 7 HOH HOH . D 4 HOH A 42 442 2 HOH HOH . D 4 HOH A 43 443 33 HOH HOH . D 4 HOH A 44 444 28 HOH HOH . D 4 HOH A 45 445 35 HOH HOH . D 4 HOH A 46 446 8 HOH HOH . D 4 HOH A 47 447 56 HOH HOH . D 4 HOH A 48 448 34 HOH HOH . D 4 HOH A 49 449 1 HOH HOH . D 4 HOH A 50 450 87 HOH HOH . D 4 HOH A 51 451 70 HOH HOH . D 4 HOH A 52 452 41 HOH HOH . D 4 HOH A 53 453 89 HOH HOH . D 4 HOH A 54 454 62 HOH HOH . D 4 HOH A 55 455 73 HOH HOH . D 4 HOH A 56 456 36 HOH HOH . D 4 HOH A 57 457 107 HOH HOH . D 4 HOH A 58 458 61 HOH HOH . D 4 HOH A 59 459 74 HOH HOH . D 4 HOH A 60 460 60 HOH HOH . D 4 HOH A 61 461 15 HOH HOH . D 4 HOH A 62 462 21 HOH HOH . D 4 HOH A 63 463 30 HOH HOH . D 4 HOH A 64 464 23 HOH HOH . D 4 HOH A 65 465 25 HOH HOH . D 4 HOH A 66 466 20 HOH HOH . D 4 HOH A 67 467 104 HOH HOH . D 4 HOH A 68 468 99 HOH HOH . D 4 HOH A 69 469 52 HOH HOH . D 4 HOH A 70 470 98 HOH HOH . D 4 HOH A 71 471 82 HOH HOH . D 4 HOH A 72 472 101 HOH HOH . D 4 HOH A 73 473 27 HOH HOH . D 4 HOH A 74 474 44 HOH HOH . D 4 HOH A 75 475 94 HOH HOH . D 4 HOH A 76 476 47 HOH HOH . D 4 HOH A 77 477 38 HOH HOH . D 4 HOH A 78 478 59 HOH HOH . D 4 HOH A 79 479 72 HOH HOH . D 4 HOH A 80 480 77 HOH HOH . D 4 HOH A 81 481 102 HOH HOH . D 4 HOH A 82 482 95 HOH HOH . D 4 HOH A 83 483 93 HOH HOH . D 4 HOH A 84 484 69 HOH HOH . D 4 HOH A 85 485 79 HOH HOH . D 4 HOH A 86 486 108 HOH HOH . D 4 HOH A 87 487 81 HOH HOH . D 4 HOH A 88 488 53 HOH HOH . D 4 HOH A 89 489 90 HOH HOH . D 4 HOH A 90 490 105 HOH HOH . D 4 HOH A 91 491 58 HOH HOH . D 4 HOH A 92 492 91 HOH HOH . D 4 HOH A 93 493 84 HOH HOH . D 4 HOH A 94 494 88 HOH HOH . D 4 HOH A 95 495 80 HOH HOH . D 4 HOH A 96 496 51 HOH HOH . D 4 HOH A 97 497 106 HOH HOH . D 4 HOH A 98 498 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 2.838 10.498 32.172 1 63.72 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 3.743 9.401 31.988 1 72.94 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 1.686 10.155 33.094 1 74.01 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 0.644 11.113 32.926 1 81.41 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 2.076 10.089 34.553 1 75.09 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 3.102 9.123 34.767 1 72.81 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #