data_9J1A # _model_server_result.job_id zEVxjoJud_5hk45bBG7DjQ _model_server_result.datetime_utc '2024-12-23 04:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9j1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 9J1A # _exptl.entry_id 9J1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9J1A _cell.length_a 62.239 _cell.length_b 87.413 _cell.length_c 88.959 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9J1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 62.239 87.413 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.239 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 87.413 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc10 C MN MN . A MN 402 1_555 E O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc11 C MN MN . A MN 402 1_555 E O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc12 D CA CA . A CA 403 1_555 E O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc13 D CA CA . A CA 403 1_555 E O HOH . A HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9J1A _atom_sites.fract_transf_matrix[1][1] 0.016067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 3 MN A 1 402 1 MN MN . D 4 CA A 1 403 1 CA CA . E 5 HOH A 1 501 66 HOH HOH . E 5 HOH A 2 502 86 HOH HOH . E 5 HOH A 3 503 54 HOH HOH . E 5 HOH A 4 504 41 HOH HOH . E 5 HOH A 5 505 71 HOH HOH . E 5 HOH A 6 506 52 HOH HOH . E 5 HOH A 7 507 97 HOH HOH . E 5 HOH A 8 508 105 HOH HOH . E 5 HOH A 9 509 72 HOH HOH . E 5 HOH A 10 510 25 HOH HOH . E 5 HOH A 11 511 108 HOH HOH . E 5 HOH A 12 512 79 HOH HOH . E 5 HOH A 13 513 18 HOH HOH . E 5 HOH A 14 514 85 HOH HOH . E 5 HOH A 15 515 60 HOH HOH . E 5 HOH A 16 516 119 HOH HOH . E 5 HOH A 17 517 9 HOH HOH . E 5 HOH A 18 518 124 HOH HOH . E 5 HOH A 19 519 42 HOH HOH . E 5 HOH A 20 520 34 HOH HOH . E 5 HOH A 21 521 103 HOH HOH . E 5 HOH A 22 522 67 HOH HOH . E 5 HOH A 23 523 12 HOH HOH . E 5 HOH A 24 524 100 HOH HOH . E 5 HOH A 25 525 99 HOH HOH . E 5 HOH A 26 526 121 HOH HOH . E 5 HOH A 27 527 47 HOH HOH . E 5 HOH A 28 528 63 HOH HOH . E 5 HOH A 29 529 29 HOH HOH . E 5 HOH A 30 530 13 HOH HOH . E 5 HOH A 31 531 122 HOH HOH . E 5 HOH A 32 532 39 HOH HOH . E 5 HOH A 33 533 61 HOH HOH . E 5 HOH A 34 534 75 HOH HOH . E 5 HOH A 35 535 93 HOH HOH . E 5 HOH A 36 536 74 HOH HOH . E 5 HOH A 37 537 44 HOH HOH . E 5 HOH A 38 538 20 HOH HOH . E 5 HOH A 39 539 46 HOH HOH . E 5 HOH A 40 540 4 HOH HOH . E 5 HOH A 41 541 15 HOH HOH . E 5 HOH A 42 542 55 HOH HOH . E 5 HOH A 43 543 82 HOH HOH . E 5 HOH A 44 544 84 HOH HOH . E 5 HOH A 45 545 65 HOH HOH . E 5 HOH A 46 546 62 HOH HOH . E 5 HOH A 47 547 6 HOH HOH . E 5 HOH A 48 548 73 HOH HOH . E 5 HOH A 49 549 104 HOH HOH . E 5 HOH A 50 550 1 HOH HOH . E 5 HOH A 51 551 83 HOH HOH . E 5 HOH A 52 552 64 HOH HOH . E 5 HOH A 53 553 89 HOH HOH . E 5 HOH A 54 554 23 HOH HOH . E 5 HOH A 55 555 16 HOH HOH . E 5 HOH A 56 556 92 HOH HOH . E 5 HOH A 57 557 125 HOH HOH . E 5 HOH A 58 558 5 HOH HOH . E 5 HOH A 59 559 117 HOH HOH . E 5 HOH A 60 560 78 HOH HOH . E 5 HOH A 61 561 101 HOH HOH . E 5 HOH A 62 562 22 HOH HOH . E 5 HOH A 63 563 53 HOH HOH . E 5 HOH A 64 564 69 HOH HOH . E 5 HOH A 65 565 45 HOH HOH . E 5 HOH A 66 566 81 HOH HOH . E 5 HOH A 67 567 76 HOH HOH . E 5 HOH A 68 568 80 HOH HOH . E 5 HOH A 69 569 110 HOH HOH . E 5 HOH A 70 570 87 HOH HOH . E 5 HOH A 71 571 10 HOH HOH . E 5 HOH A 72 572 90 HOH HOH . E 5 HOH A 73 573 109 HOH HOH . E 5 HOH A 74 574 88 HOH HOH . E 5 HOH A 75 575 59 HOH HOH . E 5 HOH A 76 576 2 HOH HOH . E 5 HOH A 77 577 56 HOH HOH . E 5 HOH A 78 578 3 HOH HOH . E 5 HOH A 79 579 96 HOH HOH . E 5 HOH A 80 580 49 HOH HOH . E 5 HOH A 81 581 37 HOH HOH . E 5 HOH A 82 582 115 HOH HOH . E 5 HOH A 83 583 24 HOH HOH . E 5 HOH A 84 584 33 HOH HOH . E 5 HOH A 85 585 98 HOH HOH . E 5 HOH A 86 586 11 HOH HOH . E 5 HOH A 87 587 91 HOH HOH . E 5 HOH A 88 588 26 HOH HOH . E 5 HOH A 89 589 43 HOH HOH . E 5 HOH A 90 590 94 HOH HOH . E 5 HOH A 91 591 19 HOH HOH . E 5 HOH A 92 592 68 HOH HOH . E 5 HOH A 93 593 57 HOH HOH . E 5 HOH A 94 594 111 HOH HOH . E 5 HOH A 95 595 8 HOH HOH . E 5 HOH A 96 596 102 HOH HOH . E 5 HOH A 97 597 35 HOH HOH . E 5 HOH A 98 598 40 HOH HOH . E 5 HOH A 99 599 51 HOH HOH . E 5 HOH A 100 600 70 HOH HOH . E 5 HOH A 101 601 32 HOH HOH . E 5 HOH A 102 602 7 HOH HOH . E 5 HOH A 103 603 118 HOH HOH . E 5 HOH A 104 604 106 HOH HOH . E 5 HOH A 105 605 120 HOH HOH . E 5 HOH A 106 606 50 HOH HOH . E 5 HOH A 107 607 31 HOH HOH . E 5 HOH A 108 608 95 HOH HOH . E 5 HOH A 109 609 14 HOH HOH . E 5 HOH A 110 610 114 HOH HOH . E 5 HOH A 111 611 77 HOH HOH . E 5 HOH A 112 612 30 HOH HOH . E 5 HOH A 113 613 38 HOH HOH . E 5 HOH A 114 614 113 HOH HOH . E 5 HOH A 115 615 48 HOH HOH . E 5 HOH A 116 616 17 HOH HOH . E 5 HOH A 117 617 21 HOH HOH . E 5 HOH A 118 618 116 HOH HOH . E 5 HOH A 119 619 28 HOH HOH . E 5 HOH A 120 620 112 HOH HOH . E 5 HOH A 121 621 58 HOH HOH . E 5 HOH A 122 622 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 13.827 _atom_site.Cartn_y 19.689 _atom_site.Cartn_z 20.412 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #