data_9J4J # _model_server_result.job_id F1UmbfP79OIyvty9KqwopQ _model_server_result.datetime_utc '2024-10-11 01:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9j4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 9J4J # _exptl.entry_id 9J4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9J4J _cell.length_a 167.642 _cell.length_b 167.642 _cell.length_c 85.297 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9J4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 1 2 FRU FRU C1 H11 . O1 HO1 . sing 2 ? 3 1 2 GLC FRU C1 O1 . O2 HO2 . sing 3 ? 3 3 2 FRU FRU C2 O2 . O1 HO1 . sing 4 ? 3 4 3 FRU FRU C2 O2 . O1 HO1 . sing 5 ? 4 2 1 FRU FRU C2 O2 . O1 HO1 . sing 6 ? 4 3 2 FRU FRU C2 O2 . O1 HO1 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D FRU 1 D 1 FRU DDD 2 FRU 2 n D FRU 2 D 2 FRU DaD 3 FRU 3 n E GLC 1 E 1 GLC EEE 1 GLC 3 n E FRU 2 E 2 FRU EaE 2 FRU 3 n E FRU 3 E 3 FRU EbE 3 FRU 3 n E FRU 4 E 4 FRU EcE 4 FRU 4 n F FRU 1 F 1 FRU FFF 2 FRU 4 n F FRU 2 F 2 FRU FaF 3 FRU 4 n F FRU 3 F 3 FRU FbF 4 FRU 3 n G GLC 1 G 1 GLC GGG 1 GLC 3 n G FRU 2 G 2 FRU GaG 2 FRU 3 n G FRU 3 G 3 FRU GbG 3 FRU 3 n G FRU 4 G 4 FRU GcG 4 FRU 3 n H GLC 1 H 1 GLC HHH 1 GLC 3 n H FRU 2 H 2 FRU HaH 2 FRU 3 n H FRU 3 H 3 FRU HbH 3 FRU 3 n H FRU 4 H 4 FRU HcH 4 FRU 3 n I GLC 1 I 1 GLC III 1 GLC 3 n I FRU 2 I 2 FRU IaI 2 FRU 3 n I FRU 3 I 3 FRU IbI 3 FRU 3 n I FRU 4 I 4 FRU IcI 4 FRU 3 n J GLC 1 J 1 GLC JJJ 1 GLC 3 n J FRU 2 J 2 FRU JaJ 2 FRU 3 n J FRU 3 J 3 FRU JbJ 3 FRU 3 n J FRU 4 J 4 FRU JcJ 4 FRU # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C1 FRU . D FRU 1 1_555 D O1 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale2 E C1 GLC . E GLC 1 1_555 E O2 FRU . E FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale3 E O1 FRU . E FRU 2 1_555 E C2 FRU . E FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale4 E O1 FRU . E FRU 3 1_555 E C2 FRU . E FRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale5 F O1 FRU . F FRU 1 1_555 F C2 FRU . F FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 F O1 FRU . F FRU 2 1_555 F C2 FRU . F FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale7 G C1 GLC . G GLC 1 1_555 G O2 FRU . G FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale8 G O1 FRU . G FRU 2 1_555 G C2 FRU . G FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 G O1 FRU . G FRU 3 1_555 G C2 FRU . G FRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? covale ? covale10 H C1 GLC . H GLC 1 1_555 H O2 FRU . H FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale11 H O1 FRU . H FRU 2 1_555 H C2 FRU . H FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale12 H O1 FRU . H FRU 3 1_555 H C2 FRU . H FRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? covale ? covale13 I C1 GLC . I GLC 1 1_555 I O2 FRU . I FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale14 I O1 FRU . I FRU 2 1_555 I C2 FRU . I FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 I O1 FRU . I FRU 3 1_555 I C2 FRU . I FRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale16 J C1 GLC . J GLC 1 1_555 J O2 FRU . J FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 J O1 FRU . J FRU 2 1_555 J C2 FRU . J FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale18 J O1 FRU . J FRU 3 1_555 J C2 FRU . J FRU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id FRU _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-fructose;D-fructose;fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FRU sing 83 n n C1 O1 FRU sing 84 n n C1 H11 FRU sing 85 n n C1 H12 FRU sing 86 n n C2 C3 FRU sing 87 n n C2 O2 FRU sing 88 n n C2 O5 FRU sing 89 n n C3 C4 FRU sing 90 n n C3 O3 FRU sing 91 n n C3 H3 FRU sing 92 n n C4 C5 FRU sing 93 n n C4 O4 FRU sing 94 n n C4 H4 FRU sing 95 n n C5 C6 FRU sing 96 n n C5 O5 FRU sing 97 n n C5 H5 FRU sing 98 n n C6 O6 FRU sing 99 n n C6 H61 FRU sing 100 n n C6 H62 FRU sing 101 n n O1 HO1 FRU sing 102 n n O2 HO2 FRU sing 103 n n O3 HO3 FRU sing 104 n n O4 HO4 FRU sing 105 n n O6 HO6 FRU sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FRU DFrufb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FRU b-D-fructofuranose 'COMMON NAME' GMML 1 FRU b-D-Fruf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FRU Fru 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9J4J _atom_sites.fract_transf_matrix[1][1] 0.005965 _atom_sites.fract_transf_matrix[1][2] 0.003444 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 FRU C 1 501 4 FRU FRU . L 6 HOH A 1 501 3 HOH HOH . L 6 HOH A 2 502 9 HOH HOH . L 6 HOH A 3 503 14 HOH HOH . L 6 HOH A 4 504 1 HOH HOH . L 6 HOH A 5 505 13 HOH HOH . M 6 HOH B 1 501 8 HOH HOH . M 6 HOH B 2 502 6 HOH HOH . M 6 HOH B 3 503 4 HOH HOH . N 6 HOH C 1 601 7 HOH HOH . N 6 HOH C 2 602 2 HOH HOH . N 6 HOH C 3 603 10 HOH HOH . N 6 HOH C 4 604 5 HOH HOH . N 6 HOH C 5 605 12 HOH HOH . N 6 HOH C 6 606 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FRU . . . K 5 -1.348 -42.503 -7.065 1 86.73 0 C1 FRU 501 C 1 HETATM 2 C C2 FRU . . . K 5 -1.636 -42.658 -5.529 1 86.63 0 C2 FRU 501 C 1 HETATM 3 C C3 FRU . . . K 5 -0.325 -42.785 -4.634 1 74.33 0 C3 FRU 501 C 1 HETATM 4 C C4 FRU . . . K 5 -0.013 -44.208 -4.281 1 68.24 0 C4 FRU 501 C 1 HETATM 5 C C5 FRU . . . K 5 -0.75 -44.961 -5.353 1 68.42 0 C5 FRU 501 C 1 HETATM 6 C C6 FRU . . . K 5 -1.038 -46.391 -4.908 1 66.24 0 C6 FRU 501 C 1 HETATM 7 O O1 FRU . . . K 5 -1.637 -43.668 -7.897 1 65.86 0 O1 FRU 501 C 1 HETATM 8 O O3 FRU . . . K 5 -0.304 -42.236 -3.31 1 82.55 0 O3 FRU 501 C 1 HETATM 9 O O4 FRU . . . K 5 1.409 -44.331 -4.201 1 65.08 0 O4 FRU 501 C 1 HETATM 10 O O5 FRU . . . K 5 -1.908 -44.115 -5.481 1 81.44 0 O5 FRU 501 C 1 HETATM 11 O O6 FRU . . . K 5 -2.423 -46.643 -4.637 1 68.89 0 O6 FRU 501 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #