data_9J4X # _model_server_result.job_id 0jVqyhZk8VRLItIEJ3uajA _model_server_result.datetime_utc '2025-09-13 21:08:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9j4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 9J4X # _exptl.entry_id 9J4X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9J4X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9J4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 235 n n P O14 PC1 doub 236 n n P O13 PC1 sing 237 n n P O11 PC1 sing 238 n n O13 C11 PC1 sing 239 n n C11 C12 PC1 sing 240 n n C11 H111 PC1 sing 241 n n C11 H112 PC1 sing 242 n n C12 N PC1 sing 243 n n C12 H121 PC1 sing 244 n n C12 H122 PC1 sing 245 n n N C13 PC1 sing 246 n n N C14 PC1 sing 247 n n N C15 PC1 sing 248 n n C13 H131 PC1 sing 249 n n C13 H132 PC1 sing 250 n n C13 H133 PC1 sing 251 n n C14 H141 PC1 sing 252 n n C14 H142 PC1 sing 253 n n C14 H143 PC1 sing 254 n n C15 H151 PC1 sing 255 n n C15 H152 PC1 sing 256 n n C15 H153 PC1 sing 257 n n O11 C1 PC1 sing 258 n n C1 C2 PC1 sing 259 n n C1 H11 PC1 sing 260 n n C1 H12 PC1 sing 261 n n C2 O21 PC1 sing 262 n n C2 C3 PC1 sing 263 n n C2 H2 PC1 sing 264 n n O21 C21 PC1 sing 265 n n C21 O22 PC1 doub 266 n n C21 C22 PC1 sing 267 n n C22 C23 PC1 sing 268 n n C22 H221 PC1 sing 269 n n C22 H222 PC1 sing 270 n n C23 C24 PC1 sing 271 n n C23 H231 PC1 sing 272 n n C23 H232 PC1 sing 273 n n C24 C25 PC1 sing 274 n n C24 H241 PC1 sing 275 n n C24 H242 PC1 sing 276 n n C25 C26 PC1 sing 277 n n C25 H251 PC1 sing 278 n n C25 H252 PC1 sing 279 n n C26 C27 PC1 sing 280 n n C26 H261 PC1 sing 281 n n C26 H262 PC1 sing 282 n n C27 C28 PC1 sing 283 n n C27 H271 PC1 sing 284 n n C27 H272 PC1 sing 285 n n C28 C29 PC1 sing 286 n n C28 H281 PC1 sing 287 n n C28 H282 PC1 sing 288 n n C29 C2A PC1 sing 289 n n C29 H291 PC1 sing 290 n n C29 H292 PC1 sing 291 n n C2A C2B PC1 sing 292 n n C2A H2A1 PC1 sing 293 n n C2A H2A2 PC1 sing 294 n n C2B C2C PC1 sing 295 n n C2B H2B1 PC1 sing 296 n n C2B H2B2 PC1 sing 297 n n C2C C2D PC1 sing 298 n n C2C H2C1 PC1 sing 299 n n C2C H2C2 PC1 sing 300 n n C2D C2E PC1 sing 301 n n C2D H2D1 PC1 sing 302 n n C2D H2D2 PC1 sing 303 n n C2E C2F PC1 sing 304 n n C2E H2E1 PC1 sing 305 n n C2E H2E2 PC1 sing 306 n n C2F C2G PC1 sing 307 n n C2F H2F1 PC1 sing 308 n n C2F H2F2 PC1 sing 309 n n C2G C2H PC1 sing 310 n n C2G H2G1 PC1 sing 311 n n C2G H2G2 PC1 sing 312 n n C2H C2I PC1 sing 313 n n C2H H2H1 PC1 sing 314 n n C2H H2H2 PC1 sing 315 n n C2I H2I1 PC1 sing 316 n n C2I H2I2 PC1 sing 317 n n C2I H2I3 PC1 sing 318 n n C3 O31 PC1 sing 319 n n C3 H31 PC1 sing 320 n n C3 H32 PC1 sing 321 n n O31 C31 PC1 sing 322 n n C31 O32 PC1 doub 323 n n C31 C32 PC1 sing 324 n n C32 C33 PC1 sing 325 n n C32 H321 PC1 sing 326 n n C32 H322 PC1 sing 327 n n C33 C34 PC1 sing 328 n n C33 H331 PC1 sing 329 n n C33 H332 PC1 sing 330 n n C34 C35 PC1 sing 331 n n C34 H341 PC1 sing 332 n n C34 H342 PC1 sing 333 n n C35 C36 PC1 sing 334 n n C35 H351 PC1 sing 335 n n C35 H352 PC1 sing 336 n n C36 C37 PC1 sing 337 n n C36 H361 PC1 sing 338 n n C36 H362 PC1 sing 339 n n C37 C38 PC1 sing 340 n n C37 H371 PC1 sing 341 n n C37 H372 PC1 sing 342 n n C38 C39 PC1 sing 343 n n C38 H381 PC1 sing 344 n n C38 H382 PC1 sing 345 n n C39 C3A PC1 sing 346 n n C39 H391 PC1 sing 347 n n C39 H392 PC1 sing 348 n n C3A C3B PC1 sing 349 n n C3A H3A1 PC1 sing 350 n n C3A H3A2 PC1 sing 351 n n C3B C3C PC1 sing 352 n n C3B H3B1 PC1 sing 353 n n C3B H3B2 PC1 sing 354 n n C3C C3D PC1 sing 355 n n C3C H3C1 PC1 sing 356 n n C3C H3C2 PC1 sing 357 n n C3D C3E PC1 sing 358 n n C3D H3D1 PC1 sing 359 n n C3D H3D2 PC1 sing 360 n n C3E C3F PC1 sing 361 n n C3E H3E1 PC1 sing 362 n n C3E H3E2 PC1 sing 363 n n C3F C3G PC1 sing 364 n n C3F H3F1 PC1 sing 365 n n C3F H3F2 PC1 sing 366 n n C3G C3H PC1 sing 367 n n C3G H3G1 PC1 sing 368 n n C3G H3G2 PC1 sing 369 n n C3H C3I PC1 sing 370 n n C3H H3H1 PC1 sing 371 n n C3H H3H2 PC1 sing 372 n n C3I H3I1 PC1 sing 373 n n C3I H3I2 PC1 sing 374 n n C3I H3I3 PC1 sing 375 n n # _atom_sites.entry_id 9J4X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PC1 A 1 801 702 PC1 PC1 . D 2 PC1 A 1 802 703 PC1 PC1 . E 2 PC1 B 1 801 702 PC1 PC1 . F 2 PC1 B 1 802 703 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . C 2 167.904 137.278 127.995 1 70.71 ? O12 PC1 801 A 1 HETATM 2 P P PC1 . . . C 2 166.419 137.264 128.105 1 85.55 ? P PC1 801 A 1 HETATM 3 O O14 PC1 . . . C 2 165.537 138.348 127.586 1 69.52 ? O14 PC1 801 A 1 HETATM 4 O O13 PC1 . . . C 2 165.818 135.876 127.444 1 68.99 ? O13 PC1 801 A 1 HETATM 5 C C11 PC1 . . . C 2 165.85 135.744 126.043 1 77.25 ? C11 PC1 801 A 1 HETATM 6 C C12 PC1 . . . C 2 165.164 134.424 125.724 1 82.3 ? C12 PC1 801 A 1 HETATM 7 N N PC1 . . . C 2 166.056 133.228 125.556 1 84.08 ? N PC1 801 A 1 HETATM 8 C C13 PC1 . . . C 2 166.202 132.497 126.839 1 70.3 ? C13 PC1 801 A 1 HETATM 9 C C14 PC1 . . . C 2 165.41 132.311 124.575 1 78.59 ? C14 PC1 801 A 1 HETATM 10 C C15 PC1 . . . C 2 167.404 133.606 125.047 1 75.7 ? C15 PC1 801 A 1 HETATM 11 O O11 PC1 . . . C 2 166.155 137.034 129.702 1 63.27 ? O11 PC1 801 A 1 HETATM 12 C C1 PC1 . . . C 2 167.271 136.984 130.559 1 52.07 ? C1 PC1 801 A 1 HETATM 13 C C2 PC1 . . . C 2 167.26 138.178 131.491 1 50.53 ? C2 PC1 801 A 1 HETATM 14 O O21 PC1 . . . C 2 166.158 138.119 132.396 1 55.46 ? O21 PC1 801 A 1 HETATM 15 C C21 PC1 . . . C 2 166.253 137.346 133.472 1 50.11 ? C21 PC1 801 A 1 HETATM 16 O O22 PC1 . . . C 2 167.279 136.837 133.839 1 46.77 ? O22 PC1 801 A 1 HETATM 17 C C22 PC1 . . . C 2 164.919 137.2 134.145 1 47.95 ? C22 PC1 801 A 1 HETATM 18 C C23 PC1 . . . C 2 164.745 135.89 134.889 1 41.6 ? C23 PC1 801 A 1 HETATM 19 C C24 PC1 . . . C 2 164.572 136.138 136.378 1 35.34 ? C24 PC1 801 A 1 HETATM 20 C C25 PC1 . . . C 2 165.743 136.89 136.988 1 29.61 ? C25 PC1 801 A 1 HETATM 21 C C26 PC1 . . . C 2 165.608 137.048 138.494 1 32.77 ? C26 PC1 801 A 1 HETATM 22 C C27 PC1 . . . C 2 164.878 135.891 139.162 1 38.04 ? C27 PC1 801 A 1 HETATM 23 C C28 PC1 . . . C 2 165.077 135.879 140.669 1 42.63 ? C28 PC1 801 A 1 HETATM 24 C C29 PC1 . . . C 2 166.546 135.947 141.057 1 46.8 ? C29 PC1 801 A 1 HETATM 25 C C2A PC1 . . . C 2 166.833 135.324 142.415 1 53.81 ? C2A PC1 801 A 1 HETATM 26 C C2B PC1 . . . C 2 168.27 134.844 142.553 1 49.64 ? C2B PC1 801 A 1 HETATM 27 C C2C PC1 . . . C 2 168.401 133.654 143.49 1 56.04 ? C2C PC1 801 A 1 HETATM 28 C C2D PC1 . . . C 2 168.13 134.007 144.944 1 60.17 ? C2D PC1 801 A 1 HETATM 29 C C2E PC1 . . . C 2 169.252 134.82 145.576 1 60.97 ? C2E PC1 801 A 1 HETATM 30 C C2F PC1 . . . C 2 169.214 134.82 147.098 1 66.43 ? C2F PC1 801 A 1 HETATM 31 C C2G PC1 . . . C 2 170.289 133.941 147.727 1 77.67 ? C2G PC1 801 A 1 HETATM 32 C C2H PC1 . . . C 2 170.031 132.446 147.582 1 79.2 ? C2H PC1 801 A 1 HETATM 33 C C2I PC1 . . . C 2 171.064 131.591 148.302 1 75.23 ? C2I PC1 801 A 1 HETATM 34 C C3 PC1 . . . C 2 167.139 139.494 130.747 1 57.7 ? C3 PC1 801 A 1 HETATM 35 O O31 PC1 . . . C 2 168.279 139.612 129.897 1 68.3 ? O31 PC1 801 A 1 HETATM 36 C C31 PC1 . . . C 2 169.145 140.604 130.104 1 60.23 ? C31 PC1 801 A 1 HETATM 37 O O32 PC1 . . . C 2 168.985 141.72 129.68 1 49.1 ? O32 PC1 801 A 1 HETATM 38 C C32 PC1 . . . C 2 170.33 140.148 130.908 1 47.91 ? C32 PC1 801 A 1 HETATM 39 C C33 PC1 . . . C 2 170.145 140.246 132.417 1 44.62 ? C33 PC1 801 A 1 HETATM 40 C C34 PC1 . . . C 2 170.421 138.914 133.101 1 42.25 ? C34 PC1 801 A 1 HETATM 41 C C35 PC1 . . . C 2 170.707 139.032 134.59 1 32.21 ? C35 PC1 801 A 1 HETATM 42 C C36 PC1 . . . C 2 169.446 139.103 135.436 1 34.47 ? C36 PC1 801 A 1 HETATM 43 C C37 PC1 . . . C 2 169.631 138.555 136.844 1 38.4 ? C37 PC1 801 A 1 HETATM 44 C C38 PC1 . . . C 2 171.042 138.76 137.379 1 37.38 ? C38 PC1 801 A 1 HETATM 45 C C39 PC1 . . . C 2 171.2 138.401 138.85 1 42.15 ? C39 PC1 801 A 1 HETATM 46 C C3A PC1 . . . C 2 171.173 136.901 139.106 1 45.14 ? C3A PC1 801 A 1 HETATM 47 C C3B PC1 . . . C 2 172.27 136.426 140.049 1 50.47 ? C3B PC1 801 A 1 HETATM 48 C C3C PC1 . . . C 2 172.123 136.974 141.463 1 55.87 ? C3C PC1 801 A 1 HETATM 49 C C3D PC1 . . . C 2 173.303 136.651 142.369 1 62.74 ? C3D PC1 801 A 1 HETATM 50 C C3E PC1 . . . C 2 173.493 135.157 142.598 1 69.6 ? C3E PC1 801 A 1 HETATM 51 C C3F PC1 . . . C 2 174.789 134.822 143.327 1 77.65 ? C3F PC1 801 A 1 HETATM 52 C C3G PC1 . . . C 2 174.91 133.352 143.711 1 86.29 ? C3G PC1 801 A 1 HETATM 53 C C3H PC1 . . . C 2 174.037 132.957 144.896 1 90.45 ? C3H PC1 801 A 1 HETATM 54 C C3I PC1 . . . C 2 174.426 131.611 145.492 1 82.86 ? C3I PC1 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #