data_9J52 # _model_server_result.job_id YSsyqOINul6I16Mu4LLEPA _model_server_result.datetime_utc '2025-04-27 16:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9j52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 9J52 # _exptl.entry_id 9J52 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9J52 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9J52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 235 n n P O14 PC1 doub 236 n n P O13 PC1 sing 237 n n P O11 PC1 sing 238 n n O13 C11 PC1 sing 239 n n C11 C12 PC1 sing 240 n n C11 H111 PC1 sing 241 n n C11 H112 PC1 sing 242 n n C12 N PC1 sing 243 n n C12 H121 PC1 sing 244 n n C12 H122 PC1 sing 245 n n N C13 PC1 sing 246 n n N C14 PC1 sing 247 n n N C15 PC1 sing 248 n n C13 H131 PC1 sing 249 n n C13 H132 PC1 sing 250 n n C13 H133 PC1 sing 251 n n C14 H141 PC1 sing 252 n n C14 H142 PC1 sing 253 n n C14 H143 PC1 sing 254 n n C15 H151 PC1 sing 255 n n C15 H152 PC1 sing 256 n n C15 H153 PC1 sing 257 n n O11 C1 PC1 sing 258 n n C1 C2 PC1 sing 259 n n C1 H11 PC1 sing 260 n n C1 H12 PC1 sing 261 n n C2 O21 PC1 sing 262 n n C2 C3 PC1 sing 263 n n C2 H2 PC1 sing 264 n n O21 C21 PC1 sing 265 n n C21 O22 PC1 doub 266 n n C21 C22 PC1 sing 267 n n C22 C23 PC1 sing 268 n n C22 H221 PC1 sing 269 n n C22 H222 PC1 sing 270 n n C23 C24 PC1 sing 271 n n C23 H231 PC1 sing 272 n n C23 H232 PC1 sing 273 n n C24 C25 PC1 sing 274 n n C24 H241 PC1 sing 275 n n C24 H242 PC1 sing 276 n n C25 C26 PC1 sing 277 n n C25 H251 PC1 sing 278 n n C25 H252 PC1 sing 279 n n C26 C27 PC1 sing 280 n n C26 H261 PC1 sing 281 n n C26 H262 PC1 sing 282 n n C27 C28 PC1 sing 283 n n C27 H271 PC1 sing 284 n n C27 H272 PC1 sing 285 n n C28 C29 PC1 sing 286 n n C28 H281 PC1 sing 287 n n C28 H282 PC1 sing 288 n n C29 C2A PC1 sing 289 n n C29 H291 PC1 sing 290 n n C29 H292 PC1 sing 291 n n C2A C2B PC1 sing 292 n n C2A H2A1 PC1 sing 293 n n C2A H2A2 PC1 sing 294 n n C2B C2C PC1 sing 295 n n C2B H2B1 PC1 sing 296 n n C2B H2B2 PC1 sing 297 n n C2C C2D PC1 sing 298 n n C2C H2C1 PC1 sing 299 n n C2C H2C2 PC1 sing 300 n n C2D C2E PC1 sing 301 n n C2D H2D1 PC1 sing 302 n n C2D H2D2 PC1 sing 303 n n C2E C2F PC1 sing 304 n n C2E H2E1 PC1 sing 305 n n C2E H2E2 PC1 sing 306 n n C2F C2G PC1 sing 307 n n C2F H2F1 PC1 sing 308 n n C2F H2F2 PC1 sing 309 n n C2G C2H PC1 sing 310 n n C2G H2G1 PC1 sing 311 n n C2G H2G2 PC1 sing 312 n n C2H C2I PC1 sing 313 n n C2H H2H1 PC1 sing 314 n n C2H H2H2 PC1 sing 315 n n C2I H2I1 PC1 sing 316 n n C2I H2I2 PC1 sing 317 n n C2I H2I3 PC1 sing 318 n n C3 O31 PC1 sing 319 n n C3 H31 PC1 sing 320 n n C3 H32 PC1 sing 321 n n O31 C31 PC1 sing 322 n n C31 O32 PC1 doub 323 n n C31 C32 PC1 sing 324 n n C32 C33 PC1 sing 325 n n C32 H321 PC1 sing 326 n n C32 H322 PC1 sing 327 n n C33 C34 PC1 sing 328 n n C33 H331 PC1 sing 329 n n C33 H332 PC1 sing 330 n n C34 C35 PC1 sing 331 n n C34 H341 PC1 sing 332 n n C34 H342 PC1 sing 333 n n C35 C36 PC1 sing 334 n n C35 H351 PC1 sing 335 n n C35 H352 PC1 sing 336 n n C36 C37 PC1 sing 337 n n C36 H361 PC1 sing 338 n n C36 H362 PC1 sing 339 n n C37 C38 PC1 sing 340 n n C37 H371 PC1 sing 341 n n C37 H372 PC1 sing 342 n n C38 C39 PC1 sing 343 n n C38 H381 PC1 sing 344 n n C38 H382 PC1 sing 345 n n C39 C3A PC1 sing 346 n n C39 H391 PC1 sing 347 n n C39 H392 PC1 sing 348 n n C3A C3B PC1 sing 349 n n C3A H3A1 PC1 sing 350 n n C3A H3A2 PC1 sing 351 n n C3B C3C PC1 sing 352 n n C3B H3B1 PC1 sing 353 n n C3B H3B2 PC1 sing 354 n n C3C C3D PC1 sing 355 n n C3C H3C1 PC1 sing 356 n n C3C H3C2 PC1 sing 357 n n C3D C3E PC1 sing 358 n n C3D H3D1 PC1 sing 359 n n C3D H3D2 PC1 sing 360 n n C3E C3F PC1 sing 361 n n C3E H3E1 PC1 sing 362 n n C3E H3E2 PC1 sing 363 n n C3F C3G PC1 sing 364 n n C3F H3F1 PC1 sing 365 n n C3F H3F2 PC1 sing 366 n n C3G C3H PC1 sing 367 n n C3G H3G1 PC1 sing 368 n n C3G H3G2 PC1 sing 369 n n C3H C3I PC1 sing 370 n n C3H H3H1 PC1 sing 371 n n C3H H3H2 PC1 sing 372 n n C3I H3I1 PC1 sing 373 n n C3I H3I2 PC1 sing 374 n n C3I H3I3 PC1 sing 375 n n # _atom_sites.entry_id 9J52 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PC1 A 1 801 702 PC1 PC1 . D 2 PC1 A 1 802 703 PC1 PC1 . E 3 PO4 A 1 803 7 PO4 PO4 . F 2 PC1 B 1 801 702 PC1 PC1 . G 2 PC1 B 1 802 703 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . C 2 168.225 137.207 128.412 1 75.79 ? O12 PC1 801 A 1 HETATM 2 P P PC1 . . . C 2 166.735 137.176 128.433 1 86.66 ? P PC1 801 A 1 HETATM 3 O O14 PC1 . . . C 2 165.875 137.949 127.491 1 78.69 ? O14 PC1 801 A 1 HETATM 4 O O13 PC1 . . . C 2 166.209 135.624 128.271 1 79.59 ? O13 PC1 801 A 1 HETATM 5 C C11 PC1 . . . C 2 165.729 135.217 127.016 1 81.63 ? C11 PC1 801 A 1 HETATM 6 C C12 PC1 . . . C 2 166.512 133.947 126.721 1 85.89 ? C12 PC1 801 A 1 HETATM 7 N N PC1 . . . C 2 166.675 133.606 125.273 1 83.76 ? N PC1 801 A 1 HETATM 8 C C13 PC1 . . . C 2 167.794 132.645 125.082 1 78.95 ? C13 PC1 801 A 1 HETATM 9 C C14 PC1 . . . C 2 165.408 132.964 124.823 1 84.7 ? C14 PC1 801 A 1 HETATM 10 C C15 PC1 . . . C 2 166.916 134.825 124.453 1 78.77 ? C15 PC1 801 A 1 HETATM 11 O O11 PC1 . . . C 2 166.327 137.483 129.99 1 74.16 ? O11 PC1 801 A 1 HETATM 12 C C1 PC1 . . . C 2 167.175 137.037 131.023 1 66.83 ? C1 PC1 801 A 1 HETATM 13 C C2 PC1 . . . C 2 167.265 138.127 132.07 1 62.66 ? C2 PC1 801 A 1 HETATM 14 O O21 PC1 . . . C 2 166.195 138.044 133.014 1 55.58 ? O21 PC1 801 A 1 HETATM 15 C C21 PC1 . . . C 2 166.375 137.382 134.153 1 53.21 ? C21 PC1 801 A 1 HETATM 16 O O22 PC1 . . . C 2 167.335 136.692 134.367 1 57.43 ? O22 PC1 801 A 1 HETATM 17 C C22 PC1 . . . C 2 165.242 137.618 135.111 1 48.94 ? C22 PC1 801 A 1 HETATM 18 C C23 PC1 . . . C 2 164.769 136.374 135.844 1 45.81 ? C23 PC1 801 A 1 HETATM 19 C C24 PC1 . . . C 2 165.558 136.12 137.121 1 41.54 ? C24 PC1 801 A 1 HETATM 20 C C25 PC1 . . . C 2 165.194 137.074 138.247 1 42.73 ? C25 PC1 801 A 1 HETATM 21 C C26 PC1 . . . C 2 165.863 136.712 139.564 1 48.82 ? C26 PC1 801 A 1 HETATM 22 C C27 PC1 . . . C 2 165.332 135.425 140.178 1 55.89 ? C27 PC1 801 A 1 HETATM 23 C C28 PC1 . . . C 2 166.058 135.027 141.457 1 59.62 ? C28 PC1 801 A 1 HETATM 24 C C29 PC1 . . . C 2 167.515 134.637 141.238 1 60.26 ? C29 PC1 801 A 1 HETATM 25 C C2A PC1 . . . C 2 168.159 133.979 142.452 1 72.25 ? C2A PC1 801 A 1 HETATM 26 C C2B PC1 . . . C 2 168.208 134.873 143.684 1 69.94 ? C2B PC1 801 A 1 HETATM 27 C C2C PC1 . . . C 2 169.094 134.337 144.802 1 68.73 ? C2C PC1 801 A 1 HETATM 28 C C2D PC1 . . . C 2 168.445 134.444 146.175 1 74.38 ? C2D PC1 801 A 1 HETATM 29 C C2E PC1 . . . C 2 169.445 134.532 147.321 1 74.75 ? C2E PC1 801 A 1 HETATM 30 C C2F PC1 . . . C 2 170.231 135.837 147.332 1 64.9 ? C2F PC1 801 A 1 HETATM 31 C C2G PC1 . . . C 2 170.11 136.629 148.629 1 67.25 ? C2G PC1 801 A 1 HETATM 32 C C2H PC1 . . . C 2 170.614 135.888 149.861 1 69.74 ? C2H PC1 801 A 1 HETATM 33 C C2I PC1 . . . C 2 170.887 136.809 151.042 1 68.23 ? C2I PC1 801 A 1 HETATM 34 C C3 PC1 . . . C 2 167.166 139.5 131.437 1 67.68 ? C3 PC1 801 A 1 HETATM 35 O O31 PC1 . . . C 2 168.257 139.657 130.532 1 69.64 ? O31 PC1 801 A 1 HETATM 36 C C31 PC1 . . . C 2 169.115 140.657 130.719 1 56.53 ? C31 PC1 801 A 1 HETATM 37 O O32 PC1 . . . C 2 168.926 141.783 130.339 1 43.55 ? O32 PC1 801 A 1 HETATM 38 C C32 PC1 . . . C 2 170.341 140.192 131.444 1 57.35 ? C32 PC1 801 A 1 HETATM 39 C C33 PC1 . . . C 2 170.212 140.212 132.958 1 52.88 ? C33 PC1 801 A 1 HETATM 40 C C34 PC1 . . . C 2 171.03 139.094 133.582 1 49.82 ? C34 PC1 801 A 1 HETATM 41 C C35 PC1 . . . C 2 171.086 139.173 135.099 1 45.15 ? C35 PC1 801 A 1 HETATM 42 C C36 PC1 . . . C 2 169.715 139.062 135.747 1 44.89 ? C36 PC1 801 A 1 HETATM 43 C C37 PC1 . . . C 2 169.796 138.779 137.239 1 45.87 ? C37 PC1 801 A 1 HETATM 44 C C38 PC1 . . . C 2 171.039 137.983 137.61 1 45.67 ? C38 PC1 801 A 1 HETATM 45 C C39 PC1 . . . C 2 171.163 137.697 139.098 1 47.29 ? C39 PC1 801 A 1 HETATM 46 C C3A PC1 . . . C 2 172.602 137.44 139.521 1 51.45 ? C3A PC1 801 A 1 HETATM 47 C C3B PC1 . . . C 2 172.742 137.059 140.986 1 56.39 ? C3B PC1 801 A 1 HETATM 48 C C3C PC1 . . . C 2 172.008 135.774 141.338 1 57.28 ? C3C PC1 801 A 1 HETATM 49 C C3D PC1 . . . C 2 172.321 135.276 142.741 1 63.62 ? C3D PC1 801 A 1 HETATM 50 C C3E PC1 . . . C 2 173.814 135.092 142.976 1 71.51 ? C3E PC1 801 A 1 HETATM 51 C C3F PC1 . . . C 2 174.436 133.988 142.129 1 74.34 ? C3F PC1 801 A 1 HETATM 52 C C3G PC1 . . . C 2 174.291 132.607 142.753 1 84.21 ? C3G PC1 801 A 1 HETATM 53 C C3H PC1 . . . C 2 174.591 132.59 144.246 1 86.01 ? C3H PC1 801 A 1 HETATM 54 C C3I PC1 . . . C 2 174.415 131.212 144.869 1 84.89 ? C3I PC1 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 54 #