data_9J57 # _model_server_result.job_id cJbZWU9qL6NRSC988gkESA _model_server_result.datetime_utc '2025-01-04 07:40:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9j57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 9J57 # _exptl.entry_id 9J57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9J57 _cell.length_a 108.048 _cell.length_b 108.048 _cell.length_c 44.672 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9J57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 9J57 _atom_sites.fract_transf_matrix[1][1] 0.009255 _atom_sites.fract_transf_matrix[1][2] 0.005343 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 402 EDO EDO . C 2 EDO A 1 402 406 EDO EDO . D 2 EDO A 1 403 408 EDO EDO . E 3 R5C A 1 404 410 R5C BUT . F 3 R5C A 1 405 411 R5C BUT . G 4 HOH A 1 501 132 HOH HOH . G 4 HOH A 2 502 159 HOH HOH . G 4 HOH A 3 503 156 HOH HOH . G 4 HOH A 4 504 138 HOH HOH . G 4 HOH A 5 505 142 HOH HOH . G 4 HOH A 6 506 158 HOH HOH . G 4 HOH A 7 507 11 HOH HOH . G 4 HOH A 8 508 22 HOH HOH . G 4 HOH A 9 509 151 HOH HOH . G 4 HOH A 10 510 4 HOH HOH . G 4 HOH A 11 511 26 HOH HOH . G 4 HOH A 12 512 90 HOH HOH . G 4 HOH A 13 513 164 HOH HOH . G 4 HOH A 14 514 59 HOH HOH . G 4 HOH A 15 515 3 HOH HOH . G 4 HOH A 16 516 166 HOH HOH . G 4 HOH A 17 517 34 HOH HOH . G 4 HOH A 18 518 14 HOH HOH . G 4 HOH A 19 519 79 HOH HOH . G 4 HOH A 20 520 145 HOH HOH . G 4 HOH A 21 521 12 HOH HOH . G 4 HOH A 22 522 170 HOH HOH . G 4 HOH A 23 523 180 HOH HOH . G 4 HOH A 24 524 155 HOH HOH . G 4 HOH A 25 525 7 HOH HOH . G 4 HOH A 26 526 31 HOH HOH . G 4 HOH A 27 527 25 HOH HOH . G 4 HOH A 28 528 13 HOH HOH . G 4 HOH A 29 529 42 HOH HOH . G 4 HOH A 30 530 29 HOH HOH . G 4 HOH A 31 531 160 HOH HOH . G 4 HOH A 32 532 47 HOH HOH . G 4 HOH A 33 533 77 HOH HOH . G 4 HOH A 34 534 45 HOH HOH . G 4 HOH A 35 535 58 HOH HOH . G 4 HOH A 36 536 8 HOH HOH . G 4 HOH A 37 537 75 HOH HOH . G 4 HOH A 38 538 5 HOH HOH . G 4 HOH A 39 539 37 HOH HOH . G 4 HOH A 40 540 186 HOH HOH . G 4 HOH A 41 541 9 HOH HOH . G 4 HOH A 42 542 60 HOH HOH . G 4 HOH A 43 543 17 HOH HOH . G 4 HOH A 44 544 176 HOH HOH . G 4 HOH A 45 545 161 HOH HOH . G 4 HOH A 46 546 51 HOH HOH . G 4 HOH A 47 547 46 HOH HOH . G 4 HOH A 48 548 185 HOH HOH . G 4 HOH A 49 549 56 HOH HOH . G 4 HOH A 50 550 36 HOH HOH . G 4 HOH A 51 551 183 HOH HOH . G 4 HOH A 52 552 19 HOH HOH . G 4 HOH A 53 553 181 HOH HOH . G 4 HOH A 54 554 2 HOH HOH . G 4 HOH A 55 555 64 HOH HOH . G 4 HOH A 56 556 65 HOH HOH . G 4 HOH A 57 557 20 HOH HOH . G 4 HOH A 58 558 24 HOH HOH . G 4 HOH A 59 559 10 HOH HOH . G 4 HOH A 60 560 165 HOH HOH . G 4 HOH A 61 561 73 HOH HOH . G 4 HOH A 62 562 6 HOH HOH . G 4 HOH A 63 563 54 HOH HOH . G 4 HOH A 64 564 154 HOH HOH . G 4 HOH A 65 565 18 HOH HOH . G 4 HOH A 66 566 143 HOH HOH . G 4 HOH A 67 567 69 HOH HOH . G 4 HOH A 68 568 41 HOH HOH . G 4 HOH A 69 569 134 HOH HOH . G 4 HOH A 70 570 76 HOH HOH . G 4 HOH A 71 571 99 HOH HOH . G 4 HOH A 72 572 27 HOH HOH . G 4 HOH A 73 573 70 HOH HOH . G 4 HOH A 74 574 44 HOH HOH . G 4 HOH A 75 575 123 HOH HOH . G 4 HOH A 76 576 57 HOH HOH . G 4 HOH A 77 577 35 HOH HOH . G 4 HOH A 78 578 80 HOH HOH . G 4 HOH A 79 579 167 HOH HOH . G 4 HOH A 80 580 43 HOH HOH . G 4 HOH A 81 581 81 HOH HOH . G 4 HOH A 82 582 175 HOH HOH . G 4 HOH A 83 583 82 HOH HOH . G 4 HOH A 84 584 177 HOH HOH . G 4 HOH A 85 585 33 HOH HOH . G 4 HOH A 86 586 84 HOH HOH . G 4 HOH A 87 587 182 HOH HOH . G 4 HOH A 88 588 171 HOH HOH . G 4 HOH A 89 589 184 HOH HOH . G 4 HOH A 90 590 83 HOH HOH . G 4 HOH A 91 591 168 HOH HOH . G 4 HOH A 92 592 40 HOH HOH . G 4 HOH A 93 593 179 HOH HOH . G 4 HOH A 94 594 129 HOH HOH . G 4 HOH A 95 595 187 HOH HOH . G 4 HOH A 96 596 136 HOH HOH . G 4 HOH A 97 597 50 HOH HOH . G 4 HOH A 98 598 52 HOH HOH . G 4 HOH A 99 599 150 HOH HOH . G 4 HOH A 100 600 172 HOH HOH . G 4 HOH A 101 601 140 HOH HOH . G 4 HOH A 102 602 30 HOH HOH . G 4 HOH A 103 603 133 HOH HOH . G 4 HOH A 104 604 103 HOH HOH . G 4 HOH A 105 605 66 HOH HOH . G 4 HOH A 106 606 55 HOH HOH . G 4 HOH A 107 607 174 HOH HOH . G 4 HOH A 108 608 178 HOH HOH . G 4 HOH A 109 609 131 HOH HOH . G 4 HOH A 110 610 130 HOH HOH . G 4 HOH A 111 611 126 HOH HOH . G 4 HOH A 112 612 53 HOH HOH . G 4 HOH A 113 613 61 HOH HOH . G 4 HOH A 114 614 78 HOH HOH . G 4 HOH A 115 615 32 HOH HOH . G 4 HOH A 116 616 169 HOH HOH . G 4 HOH A 117 617 162 HOH HOH . G 4 HOH A 118 618 96 HOH HOH . G 4 HOH A 119 619 163 HOH HOH . G 4 HOH A 120 620 152 HOH HOH . G 4 HOH A 121 621 68 HOH HOH . G 4 HOH A 122 622 139 HOH HOH . G 4 HOH A 123 623 113 HOH HOH . G 4 HOH A 124 624 191 HOH HOH . G 4 HOH A 125 625 39 HOH HOH . G 4 HOH A 126 626 157 HOH HOH . G 4 HOH A 127 627 112 HOH HOH . G 4 HOH A 128 628 190 HOH HOH . G 4 HOH A 129 629 153 HOH HOH . G 4 HOH A 130 630 74 HOH HOH . G 4 HOH A 131 631 144 HOH HOH . G 4 HOH A 132 632 137 HOH HOH . G 4 HOH A 133 633 189 HOH HOH . G 4 HOH A 134 634 146 HOH HOH . G 4 HOH A 135 635 104 HOH HOH . G 4 HOH A 136 636 135 HOH HOH . G 4 HOH A 137 637 141 HOH HOH . G 4 HOH A 138 638 188 HOH HOH . G 4 HOH A 139 639 111 HOH HOH . G 4 HOH A 140 640 106 HOH HOH . G 4 HOH A 141 641 108 HOH HOH . G 4 HOH A 142 642 109 HOH HOH . G 4 HOH A 143 643 105 HOH HOH . G 4 HOH A 144 644 147 HOH HOH . G 4 HOH A 145 645 110 HOH HOH . G 4 HOH A 146 646 114 HOH HOH . G 4 HOH A 147 647 116 HOH HOH . G 4 HOH A 148 648 118 HOH HOH . G 4 HOH A 149 649 117 HOH HOH . G 4 HOH A 150 650 115 HOH HOH . G 4 HOH A 151 651 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 56.075 17.322 4.338 1 40.48 0 C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 2 56.759 16.861 3.181 1 45.91 0 O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 2 55.586 16.21 5.187 1 42.37 0 C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 2 55.025 15.198 4.384 1 36.45 0 O2 EDO 402 A 1 HETATM 5 H H11 EDO . . . C 2 55.31 17.872 4.062 1 39.41 0 H11 EDO 402 A 1 HETATM 6 H H12 EDO . . . C 2 56.681 17.885 4.866 1 40.8 0 H12 EDO 402 A 1 HETATM 7 H HO1 EDO . . . C 2 56.993 17.603 2.78 0 45.02 0 HO1 EDO 402 A 1 HETATM 8 H H21 EDO . . . C 2 54.911 16.545 5.813 1 39.67 0 H21 EDO 402 A 1 HETATM 9 H H22 EDO . . . C 2 56.336 15.841 5.703 1 43.06 0 H22 EDO 402 A 1 HETATM 10 H HO2 EDO . . . C 2 55.628 14.867 3.883 1 38.85 0 HO2 EDO 402 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #