data_9J5A # _model_server_result.job_id Uq63JSO2-XpJa5GwB42Gcw _model_server_result.datetime_utc '2025-01-04 08:24:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9j5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":415}' # _entry.id 9J5A # _exptl.entry_id 9J5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9J5A _cell.length_a 108.156 _cell.length_b 108.156 _cell.length_c 44.549 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9J5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 9J5A _atom_sites.fract_transf_matrix[1][1] 0.009246 _atom_sites.fract_transf_matrix[1][2] 0.005338 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 403 EDO EDO . C 2 EDO A 1 402 405 EDO EDO . D 2 EDO A 1 403 410 EDO EDO . E 2 EDO A 1 404 411 EDO EDO . F 2 EDO A 1 405 413 EDO EDO . G 2 EDO A 1 406 414 EDO EDO . H 2 EDO A 1 407 415 EDO EDO . I 3 NPO A 1 408 416 NPO NPO . J 2 EDO A 1 409 417 EDO EDO . K 3 NPO A 1 410 419 NPO NPO . L 4 ACE A 1 411 420 ACE ACE . M 2 EDO A 1 412 422 EDO EDO . N 2 EDO A 1 413 424 EDO EDO . O 2 EDO A 1 414 425 EDO EDO . P 2 EDO A 1 415 426 EDO EDO . Q 2 EDO A 1 416 428 EDO EDO . R 2 EDO A 1 417 429 EDO EDO . S 2 EDO A 1 418 430 EDO EDO . T 2 EDO A 1 419 432 EDO EDO . U 2 EDO A 1 420 442 EDO EDO . V 2 EDO A 1 421 443 EDO EDO . W 2 EDO A 1 422 444 EDO EDO . X 2 EDO A 1 423 445 EDO EDO . Y 5 HOH A 1 501 39 HOH HOH . Y 5 HOH A 2 502 197 HOH HOH . Y 5 HOH A 3 503 287 HOH HOH . Y 5 HOH A 4 504 203 HOH HOH . Y 5 HOH A 5 505 248 HOH HOH . Y 5 HOH A 6 506 302 HOH HOH . Y 5 HOH A 7 507 55 HOH HOH . Y 5 HOH A 8 508 25 HOH HOH . Y 5 HOH A 9 509 5 HOH HOH . Y 5 HOH A 10 510 223 HOH HOH . Y 5 HOH A 11 511 69 HOH HOH . Y 5 HOH A 12 512 127 HOH HOH . Y 5 HOH A 13 513 276 HOH HOH . Y 5 HOH A 14 514 16 HOH HOH . Y 5 HOH A 15 515 233 HOH HOH . Y 5 HOH A 16 516 159 HOH HOH . Y 5 HOH A 17 517 222 HOH HOH . Y 5 HOH A 18 518 81 HOH HOH . Y 5 HOH A 19 519 33 HOH HOH . Y 5 HOH A 20 520 3 HOH HOH . Y 5 HOH A 21 521 76 HOH HOH . Y 5 HOH A 22 522 104 HOH HOH . Y 5 HOH A 23 523 28 HOH HOH . Y 5 HOH A 24 524 90 HOH HOH . Y 5 HOH A 25 525 171 HOH HOH . Y 5 HOH A 26 526 52 HOH HOH . Y 5 HOH A 27 527 8 HOH HOH . Y 5 HOH A 28 528 35 HOH HOH . Y 5 HOH A 29 529 64 HOH HOH . Y 5 HOH A 30 530 163 HOH HOH . Y 5 HOH A 31 531 43 HOH HOH . Y 5 HOH A 32 532 165 HOH HOH . Y 5 HOH A 33 533 99 HOH HOH . Y 5 HOH A 34 534 34 HOH HOH . Y 5 HOH A 35 535 29 HOH HOH . Y 5 HOH A 36 536 56 HOH HOH . Y 5 HOH A 37 537 270 HOH HOH . Y 5 HOH A 38 538 240 HOH HOH . Y 5 HOH A 39 539 20 HOH HOH . Y 5 HOH A 40 540 13 HOH HOH . Y 5 HOH A 41 541 160 HOH HOH . Y 5 HOH A 42 542 9 HOH HOH . Y 5 HOH A 43 543 40 HOH HOH . Y 5 HOH A 44 544 23 HOH HOH . Y 5 HOH A 45 545 17 HOH HOH . Y 5 HOH A 46 546 115 HOH HOH . Y 5 HOH A 47 547 182 HOH HOH . Y 5 HOH A 48 548 32 HOH HOH . Y 5 HOH A 49 549 67 HOH HOH . Y 5 HOH A 50 550 68 HOH HOH . Y 5 HOH A 51 551 2 HOH HOH . Y 5 HOH A 52 552 138 HOH HOH . Y 5 HOH A 53 553 19 HOH HOH . Y 5 HOH A 54 554 58 HOH HOH . Y 5 HOH A 55 555 31 HOH HOH . Y 5 HOH A 56 556 132 HOH HOH . Y 5 HOH A 57 557 228 HOH HOH . Y 5 HOH A 58 558 61 HOH HOH . Y 5 HOH A 59 559 94 HOH HOH . Y 5 HOH A 60 560 124 HOH HOH . Y 5 HOH A 61 561 59 HOH HOH . Y 5 HOH A 62 562 199 HOH HOH . Y 5 HOH A 63 563 77 HOH HOH . Y 5 HOH A 64 564 100 HOH HOH . Y 5 HOH A 65 565 293 HOH HOH . Y 5 HOH A 66 566 10 HOH HOH . Y 5 HOH A 67 567 80 HOH HOH . Y 5 HOH A 68 568 265 HOH HOH . Y 5 HOH A 69 569 236 HOH HOH . Y 5 HOH A 70 570 170 HOH HOH . Y 5 HOH A 71 571 179 HOH HOH . Y 5 HOH A 72 572 30 HOH HOH . Y 5 HOH A 73 573 264 HOH HOH . Y 5 HOH A 74 574 45 HOH HOH . Y 5 HOH A 75 575 158 HOH HOH . Y 5 HOH A 76 576 88 HOH HOH . Y 5 HOH A 77 577 285 HOH HOH . Y 5 HOH A 78 578 250 HOH HOH . Y 5 HOH A 79 579 44 HOH HOH . Y 5 HOH A 80 580 101 HOH HOH . Y 5 HOH A 81 581 157 HOH HOH . Y 5 HOH A 82 582 109 HOH HOH . Y 5 HOH A 83 583 286 HOH HOH . Y 5 HOH A 84 584 139 HOH HOH . Y 5 HOH A 85 585 200 HOH HOH . Y 5 HOH A 86 586 7 HOH HOH . Y 5 HOH A 87 587 78 HOH HOH . Y 5 HOH A 88 588 27 HOH HOH . Y 5 HOH A 89 589 11 HOH HOH . Y 5 HOH A 90 590 70 HOH HOH . Y 5 HOH A 91 591 143 HOH HOH . Y 5 HOH A 92 592 86 HOH HOH . Y 5 HOH A 93 593 300 HOH HOH . Y 5 HOH A 94 594 26 HOH HOH . Y 5 HOH A 95 595 36 HOH HOH . Y 5 HOH A 96 596 290 HOH HOH . Y 5 HOH A 97 597 122 HOH HOH . Y 5 HOH A 98 598 22 HOH HOH . Y 5 HOH A 99 599 119 HOH HOH . Y 5 HOH A 100 600 280 HOH HOH . Y 5 HOH A 101 601 202 HOH HOH . Y 5 HOH A 102 602 151 HOH HOH . Y 5 HOH A 103 603 117 HOH HOH . Y 5 HOH A 104 604 172 HOH HOH . Y 5 HOH A 105 605 133 HOH HOH . Y 5 HOH A 106 606 46 HOH HOH . Y 5 HOH A 107 607 37 HOH HOH . Y 5 HOH A 108 608 95 HOH HOH . Y 5 HOH A 109 609 123 HOH HOH . Y 5 HOH A 110 610 219 HOH HOH . Y 5 HOH A 111 611 57 HOH HOH . Y 5 HOH A 112 612 220 HOH HOH . Y 5 HOH A 113 613 60 HOH HOH . Y 5 HOH A 114 614 98 HOH HOH . Y 5 HOH A 115 615 14 HOH HOH . Y 5 HOH A 116 616 141 HOH HOH . Y 5 HOH A 117 617 74 HOH HOH . Y 5 HOH A 118 618 106 HOH HOH . Y 5 HOH A 119 619 269 HOH HOH . Y 5 HOH A 120 620 4 HOH HOH . Y 5 HOH A 121 621 272 HOH HOH . Y 5 HOH A 122 622 147 HOH HOH . Y 5 HOH A 123 623 268 HOH HOH . Y 5 HOH A 124 624 156 HOH HOH . Y 5 HOH A 125 625 85 HOH HOH . Y 5 HOH A 126 626 51 HOH HOH . Y 5 HOH A 127 627 102 HOH HOH . Y 5 HOH A 128 628 12 HOH HOH . Y 5 HOH A 129 629 91 HOH HOH . Y 5 HOH A 130 630 105 HOH HOH . Y 5 HOH A 131 631 65 HOH HOH . Y 5 HOH A 132 632 79 HOH HOH . Y 5 HOH A 133 633 71 HOH HOH . Y 5 HOH A 134 634 131 HOH HOH . Y 5 HOH A 135 635 146 HOH HOH . Y 5 HOH A 136 636 47 HOH HOH . Y 5 HOH A 137 637 262 HOH HOH . Y 5 HOH A 138 638 125 HOH HOH . Y 5 HOH A 139 639 282 HOH HOH . Y 5 HOH A 140 640 50 HOH HOH . Y 5 HOH A 141 641 121 HOH HOH . Y 5 HOH A 142 642 198 HOH HOH . Y 5 HOH A 143 643 84 HOH HOH . Y 5 HOH A 144 644 169 HOH HOH . Y 5 HOH A 145 645 6 HOH HOH . Y 5 HOH A 146 646 230 HOH HOH . Y 5 HOH A 147 647 295 HOH HOH . Y 5 HOH A 148 648 89 HOH HOH . Y 5 HOH A 149 649 63 HOH HOH . Y 5 HOH A 150 650 66 HOH HOH . Y 5 HOH A 151 651 234 HOH HOH . Y 5 HOH A 152 652 97 HOH HOH . Y 5 HOH A 153 653 281 HOH HOH . Y 5 HOH A 154 654 275 HOH HOH . Y 5 HOH A 155 655 284 HOH HOH . Y 5 HOH A 156 656 92 HOH HOH . Y 5 HOH A 157 657 181 HOH HOH . Y 5 HOH A 158 658 114 HOH HOH . Y 5 HOH A 159 659 292 HOH HOH . Y 5 HOH A 160 660 73 HOH HOH . Y 5 HOH A 161 661 18 HOH HOH . Y 5 HOH A 162 662 96 HOH HOH . Y 5 HOH A 163 663 93 HOH HOH . Y 5 HOH A 164 664 296 HOH HOH . Y 5 HOH A 165 665 112 HOH HOH . Y 5 HOH A 166 666 142 HOH HOH . Y 5 HOH A 167 667 82 HOH HOH . Y 5 HOH A 168 668 155 HOH HOH . Y 5 HOH A 169 669 150 HOH HOH . Y 5 HOH A 170 670 299 HOH HOH . Y 5 HOH A 171 671 229 HOH HOH . Y 5 HOH A 172 672 103 HOH HOH . Y 5 HOH A 173 673 108 HOH HOH . Y 5 HOH A 174 674 304 HOH HOH . Y 5 HOH A 175 675 206 HOH HOH . Y 5 HOH A 176 676 224 HOH HOH . Y 5 HOH A 177 677 289 HOH HOH . Y 5 HOH A 178 678 303 HOH HOH . Y 5 HOH A 179 679 231 HOH HOH . Y 5 HOH A 180 680 291 HOH HOH . Y 5 HOH A 181 681 187 HOH HOH . Y 5 HOH A 182 682 271 HOH HOH . Y 5 HOH A 183 683 201 HOH HOH . Y 5 HOH A 184 684 195 HOH HOH . Y 5 HOH A 185 685 257 HOH HOH . Y 5 HOH A 186 686 130 HOH HOH . Y 5 HOH A 187 687 297 HOH HOH . Y 5 HOH A 188 688 208 HOH HOH . Y 5 HOH A 189 689 137 HOH HOH . Y 5 HOH A 190 690 298 HOH HOH . Y 5 HOH A 191 691 274 HOH HOH . Y 5 HOH A 192 692 232 HOH HOH . Y 5 HOH A 193 693 283 HOH HOH . Y 5 HOH A 194 694 205 HOH HOH . Y 5 HOH A 195 695 263 HOH HOH . Y 5 HOH A 196 696 83 HOH HOH . Y 5 HOH A 197 697 288 HOH HOH . Y 5 HOH A 198 698 243 HOH HOH . Y 5 HOH A 199 699 194 HOH HOH . Y 5 HOH A 200 700 305 HOH HOH . Y 5 HOH A 201 701 241 HOH HOH . Y 5 HOH A 202 702 207 HOH HOH . Y 5 HOH A 203 703 149 HOH HOH . Y 5 HOH A 204 704 183 HOH HOH . Y 5 HOH A 205 705 278 HOH HOH . Y 5 HOH A 206 706 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . P 2 -19.996 -49.627 -19.723 1 50.78 0 C1 EDO 415 A 1 HETATM 2 O O1 EDO . . . P 2 -20.473 -50.498 -18.697 1 49.3 0 O1 EDO 415 A 1 HETATM 3 C C2 EDO . . . P 2 -20.928 -48.508 -20.029 1 46.94 0 C2 EDO 415 A 1 HETATM 4 O O2 EDO . . . P 2 -20.396 -47.235 -19.786 1 38.86 0 O2 EDO 415 A 1 HETATM 5 H H11 EDO . . . P 2 -19.85 -50.149 -20.542 1 52.18 0 H11 EDO 415 A 1 HETATM 6 H H12 EDO . . . P 2 -19.132 -49.251 -19.445 1 48.25 0 H12 EDO 415 A 1 HETATM 7 H HO1 EDO . . . P 2 -19.889 -51.127 -18.587 0 47.89 0 HO1 EDO 415 A 1 HETATM 8 H H21 EDO . . . P 2 -21.731 -48.616 -19.482 1 41.82 0 H21 EDO 415 A 1 HETATM 9 H H22 EDO . . . P 2 -21.193 -48.567 -20.971 1 47.44 0 H22 EDO 415 A 1 HETATM 10 H HO2 EDO . . . P 2 -20.207 -47.162 -18.964 1 35.4 0 HO2 EDO 415 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #