data_9J5D # _model_server_result.job_id UXqqrwm9TWe4WuSm3LKrdA _model_server_result.datetime_utc '2025-01-04 07:49:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9j5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 9J5D # _exptl.entry_id 9J5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9J5D _cell.length_a 108.038 _cell.length_b 108.038 _cell.length_c 44.546 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9J5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 9J5D _atom_sites.fract_transf_matrix[1][1] 0.009256 _atom_sites.fract_transf_matrix[1][2] 0.005344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TIK A 1 401 402 TIK DMP . C 3 EDO A 1 402 408 EDO EDO . D 3 EDO A 1 403 410 EDO EDO . E 3 EDO A 1 404 411 EDO EDO . F 3 EDO A 1 405 419 EDO EDO . G 4 MLA A 1 406 421 MLA MLI . H 5 ACE A 1 407 422 ACE ACE . I 3 EDO A 1 408 423 EDO EDO . J 6 HOH A 1 501 244 HOH HOH . J 6 HOH A 2 502 178 HOH HOH . J 6 HOH A 3 503 173 HOH HOH . J 6 HOH A 4 504 221 HOH HOH . J 6 HOH A 5 505 125 HOH HOH . J 6 HOH A 6 506 127 HOH HOH . J 6 HOH A 7 507 217 HOH HOH . J 6 HOH A 8 508 176 HOH HOH . J 6 HOH A 9 509 116 HOH HOH . J 6 HOH A 10 510 12 HOH HOH . J 6 HOH A 11 511 241 HOH HOH . J 6 HOH A 12 512 193 HOH HOH . J 6 HOH A 13 513 261 HOH HOH . J 6 HOH A 14 514 3 HOH HOH . J 6 HOH A 15 515 128 HOH HOH . J 6 HOH A 16 516 2 HOH HOH . J 6 HOH A 17 517 225 HOH HOH . J 6 HOH A 18 518 10 HOH HOH . J 6 HOH A 19 519 246 HOH HOH . J 6 HOH A 20 520 245 HOH HOH . J 6 HOH A 21 521 93 HOH HOH . J 6 HOH A 22 522 117 HOH HOH . J 6 HOH A 23 523 57 HOH HOH . J 6 HOH A 24 524 264 HOH HOH . J 6 HOH A 25 525 60 HOH HOH . J 6 HOH A 26 526 192 HOH HOH . J 6 HOH A 27 527 247 HOH HOH . J 6 HOH A 28 528 68 HOH HOH . J 6 HOH A 29 529 266 HOH HOH . J 6 HOH A 30 530 183 HOH HOH . J 6 HOH A 31 531 230 HOH HOH . J 6 HOH A 32 532 162 HOH HOH . J 6 HOH A 33 533 74 HOH HOH . J 6 HOH A 34 534 122 HOH HOH . J 6 HOH A 35 535 87 HOH HOH . J 6 HOH A 36 536 134 HOH HOH . J 6 HOH A 37 537 97 HOH HOH . J 6 HOH A 38 538 41 HOH HOH . J 6 HOH A 39 539 61 HOH HOH . J 6 HOH A 40 540 38 HOH HOH . J 6 HOH A 41 541 240 HOH HOH . J 6 HOH A 42 542 52 HOH HOH . J 6 HOH A 43 543 242 HOH HOH . J 6 HOH A 44 544 25 HOH HOH . J 6 HOH A 45 545 30 HOH HOH . J 6 HOH A 46 546 251 HOH HOH . J 6 HOH A 47 547 100 HOH HOH . J 6 HOH A 48 548 5 HOH HOH . J 6 HOH A 49 549 35 HOH HOH . J 6 HOH A 50 550 18 HOH HOH . J 6 HOH A 51 551 46 HOH HOH . J 6 HOH A 52 552 94 HOH HOH . J 6 HOH A 53 553 24 HOH HOH . J 6 HOH A 54 554 55 HOH HOH . J 6 HOH A 55 555 126 HOH HOH . J 6 HOH A 56 556 254 HOH HOH . J 6 HOH A 57 557 62 HOH HOH . J 6 HOH A 58 558 243 HOH HOH . J 6 HOH A 59 559 37 HOH HOH . J 6 HOH A 60 560 16 HOH HOH . J 6 HOH A 61 561 77 HOH HOH . J 6 HOH A 62 562 44 HOH HOH . J 6 HOH A 63 563 50 HOH HOH . J 6 HOH A 64 564 118 HOH HOH . J 6 HOH A 65 565 84 HOH HOH . J 6 HOH A 66 566 21 HOH HOH . J 6 HOH A 67 567 228 HOH HOH . J 6 HOH A 68 568 39 HOH HOH . J 6 HOH A 69 569 29 HOH HOH . J 6 HOH A 70 570 33 HOH HOH . J 6 HOH A 71 571 32 HOH HOH . J 6 HOH A 72 572 48 HOH HOH . J 6 HOH A 73 573 42 HOH HOH . J 6 HOH A 74 574 222 HOH HOH . J 6 HOH A 75 575 58 HOH HOH . J 6 HOH A 76 576 22 HOH HOH . J 6 HOH A 77 577 19 HOH HOH . J 6 HOH A 78 578 92 HOH HOH . J 6 HOH A 79 579 13 HOH HOH . J 6 HOH A 80 580 124 HOH HOH . J 6 HOH A 81 581 34 HOH HOH . J 6 HOH A 82 582 64 HOH HOH . J 6 HOH A 83 583 80 HOH HOH . J 6 HOH A 84 584 231 HOH HOH . J 6 HOH A 85 585 85 HOH HOH . J 6 HOH A 86 586 26 HOH HOH . J 6 HOH A 87 587 8 HOH HOH . J 6 HOH A 88 588 146 HOH HOH . J 6 HOH A 89 589 79 HOH HOH . J 6 HOH A 90 590 201 HOH HOH . J 6 HOH A 91 591 66 HOH HOH . J 6 HOH A 92 592 136 HOH HOH . J 6 HOH A 93 593 7 HOH HOH . J 6 HOH A 94 594 144 HOH HOH . J 6 HOH A 95 595 81 HOH HOH . J 6 HOH A 96 596 1 HOH HOH . J 6 HOH A 97 597 59 HOH HOH . J 6 HOH A 98 598 130 HOH HOH . J 6 HOH A 99 599 6 HOH HOH . J 6 HOH A 100 600 15 HOH HOH . J 6 HOH A 101 601 73 HOH HOH . J 6 HOH A 102 602 152 HOH HOH . J 6 HOH A 103 603 9 HOH HOH . J 6 HOH A 104 604 121 HOH HOH . J 6 HOH A 105 605 123 HOH HOH . J 6 HOH A 106 606 47 HOH HOH . J 6 HOH A 107 607 158 HOH HOH . J 6 HOH A 108 608 11 HOH HOH . J 6 HOH A 109 609 219 HOH HOH . J 6 HOH A 110 610 17 HOH HOH . J 6 HOH A 111 611 14 HOH HOH . J 6 HOH A 112 612 147 HOH HOH . J 6 HOH A 113 613 212 HOH HOH . J 6 HOH A 114 614 210 HOH HOH . J 6 HOH A 115 615 139 HOH HOH . J 6 HOH A 116 616 69 HOH HOH . J 6 HOH A 117 617 229 HOH HOH . J 6 HOH A 118 618 56 HOH HOH . J 6 HOH A 119 619 248 HOH HOH . J 6 HOH A 120 620 23 HOH HOH . J 6 HOH A 121 621 199 HOH HOH . J 6 HOH A 122 622 53 HOH HOH . J 6 HOH A 123 623 257 HOH HOH . J 6 HOH A 124 624 131 HOH HOH . J 6 HOH A 125 625 224 HOH HOH . J 6 HOH A 126 626 71 HOH HOH . J 6 HOH A 127 627 140 HOH HOH . J 6 HOH A 128 628 31 HOH HOH . J 6 HOH A 129 629 198 HOH HOH . J 6 HOH A 130 630 211 HOH HOH . J 6 HOH A 131 631 148 HOH HOH . J 6 HOH A 132 632 101 HOH HOH . J 6 HOH A 133 633 109 HOH HOH . J 6 HOH A 134 634 67 HOH HOH . J 6 HOH A 135 635 179 HOH HOH . J 6 HOH A 136 636 227 HOH HOH . J 6 HOH A 137 637 250 HOH HOH . J 6 HOH A 138 638 108 HOH HOH . J 6 HOH A 139 639 253 HOH HOH . J 6 HOH A 140 640 249 HOH HOH . J 6 HOH A 141 641 213 HOH HOH . J 6 HOH A 142 642 235 HOH HOH . J 6 HOH A 143 643 76 HOH HOH . J 6 HOH A 144 644 112 HOH HOH . J 6 HOH A 145 645 83 HOH HOH . J 6 HOH A 146 646 189 HOH HOH . J 6 HOH A 147 647 220 HOH HOH . J 6 HOH A 148 648 141 HOH HOH . J 6 HOH A 149 649 265 HOH HOH . J 6 HOH A 150 650 70 HOH HOH . J 6 HOH A 151 651 43 HOH HOH . J 6 HOH A 152 652 205 HOH HOH . J 6 HOH A 153 653 215 HOH HOH . J 6 HOH A 154 654 181 HOH HOH . J 6 HOH A 155 655 129 HOH HOH . J 6 HOH A 156 656 233 HOH HOH . J 6 HOH A 157 657 263 HOH HOH . J 6 HOH A 158 658 65 HOH HOH . J 6 HOH A 159 659 149 HOH HOH . J 6 HOH A 160 660 156 HOH HOH . J 6 HOH A 161 661 262 HOH HOH . J 6 HOH A 162 662 214 HOH HOH . J 6 HOH A 163 663 256 HOH HOH . J 6 HOH A 164 664 63 HOH HOH . J 6 HOH A 165 665 88 HOH HOH . J 6 HOH A 166 666 135 HOH HOH . J 6 HOH A 167 667 95 HOH HOH . J 6 HOH A 168 668 223 HOH HOH . J 6 HOH A 169 669 255 HOH HOH . J 6 HOH A 170 670 182 HOH HOH . J 6 HOH A 171 671 170 HOH HOH . J 6 HOH A 172 672 143 HOH HOH . J 6 HOH A 173 673 51 HOH HOH . J 6 HOH A 174 674 168 HOH HOH . J 6 HOH A 175 675 111 HOH HOH . J 6 HOH A 176 676 90 HOH HOH . J 6 HOH A 177 677 86 HOH HOH . J 6 HOH A 178 678 195 HOH HOH . J 6 HOH A 179 679 191 HOH HOH . J 6 HOH A 180 680 174 HOH HOH . J 6 HOH A 181 681 120 HOH HOH . J 6 HOH A 182 682 268 HOH HOH . J 6 HOH A 183 683 169 HOH HOH . J 6 HOH A 184 684 185 HOH HOH . J 6 HOH A 185 685 172 HOH HOH . J 6 HOH A 186 686 89 HOH HOH . J 6 HOH A 187 687 184 HOH HOH . J 6 HOH A 188 688 237 HOH HOH . J 6 HOH A 189 689 216 HOH HOH . J 6 HOH A 190 690 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 -12.143 -31.229 11.147 1 35.12 0 C1 EDO 408 A 1 HETATM 2 O O1 EDO . . . I 3 -10.72 -31.158 11.006 1 40.57 0 O1 EDO 408 A 1 HETATM 3 C C2 EDO . . . I 3 -12.871 -31.641 9.901 1 31.08 0 C2 EDO 408 A 1 HETATM 4 O O2 EDO . . . I 3 -12.466 -30.918 8.761 1 33.91 0 O2 EDO 408 A 1 HETATM 5 H H11 EDO . . . I 3 -12.475 -30.349 11.425 1 36.44 0 H11 EDO 408 A 1 HETATM 6 H H12 EDO . . . I 3 -12.357 -31.867 11.858 1 34.14 0 H12 EDO 408 A 1 HETATM 7 H HO1 EDO . . . I 3 -10.39 -30.864 11.721 0 30 0 HO1 EDO 408 A 1 HETATM 8 H H21 EDO . . . I 3 -13.832 -31.508 10.037 1 31.81 0 H21 EDO 408 A 1 HETATM 9 H H22 EDO . . . I 3 -12.716 -32.594 9.745 1 29.79 0 H22 EDO 408 A 1 HETATM 10 H HO2 EDO . . . I 3 -11.646 -31.081 8.602 1 33.81 0 HO2 EDO 408 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #