data_9J7D
#
_model_server_result.job_id            7yQq9rWVGu3Qnkn7TSx05Q 
_model_server_result.datetime_utc      '2025-06-18 12:40:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9j7d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    9J7D 
#
_exptl.entry_id    9J7D 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 G N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 264 A CYS 264 1_555 A SG CYS 275 A CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 264 B CYS 264 1_555 B SG CYS 275 B CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 468 n n 
CBA CAB Y01 sing 469 n n 
CBA CAN Y01 sing 470 n n 
CAN CAJ Y01 sing 471 n n 
CAJ CAO Y01 sing 472 n n 
CAO CBB Y01 sing 473 n n 
CBB CAC Y01 sing 474 n n 
CBB CBE Y01 sing 475 n n 
CBE CAP Y01 sing 476 n n 
CBE CBI Y01 sing 477 n n 
CAP CAQ Y01 sing 478 n n 
CAQ CBG Y01 sing 479 n n 
CBG CBI Y01 sing 480 n n 
CBG CBD Y01 sing 481 n n 
CBI CAE Y01 sing 482 n n 
CBI CAU Y01 sing 483 n n 
CAU CAS Y01 sing 484 n n 
CAS CBF Y01 sing 485 n n 
CBF CBD Y01 sing 486 n n 
CBF CBH Y01 sing 487 n n 
CBD CAK Y01 sing 488 n n 
CAK CAI Y01 sing 489 n n 
CAI CAZ Y01 doub 490 n n 
CAZ CAV Y01 sing 491 n n 
CAZ CBH Y01 sing 492 n n 
CAV CBC Y01 sing 493 n n 
CBH CAD Y01 sing 494 n n 
CBH CAT Y01 sing 495 n n 
CAT CAR Y01 sing 496 n n 
CAR CBC Y01 sing 497 n n 
CBC OAW Y01 sing 498 n n 
OAW CAY Y01 sing 499 n n 
CAY OAG Y01 doub 500 n n 
CAY CAM Y01 sing 501 n n 
CAM CAL Y01 sing 502 n n 
CAL CAX Y01 sing 503 n n 
CAX OAH Y01 sing 504 n n 
CAX OAF Y01 doub 505 n n 
CAA HAA1 Y01 sing 506 n n 
CAA HAA2 Y01 sing 507 n n 
CAA HAA3 Y01 sing 508 n n 
CBA HBA Y01 sing 509 n n 
CAB HAB1 Y01 sing 510 n n 
CAB HAB2 Y01 sing 511 n n 
CAB HAB3 Y01 sing 512 n n 
CAN HAN1 Y01 sing 513 n n 
CAN HAN2 Y01 sing 514 n n 
CAJ HAJ1 Y01 sing 515 n n 
CAJ HAJ2 Y01 sing 516 n n 
CAO HAO1 Y01 sing 517 n n 
CAO HAO2 Y01 sing 518 n n 
CBB HBB Y01 sing 519 n n 
CAC HAC1 Y01 sing 520 n n 
CAC HAC2 Y01 sing 521 n n 
CAC HAC3 Y01 sing 522 n n 
CBE HBE Y01 sing 523 n n 
CAP HAP1 Y01 sing 524 n n 
CAP HAP2 Y01 sing 525 n n 
CAQ HAQ1 Y01 sing 526 n n 
CAQ HAQ2 Y01 sing 527 n n 
CBG HBG Y01 sing 528 n n 
CBD HBD Y01 sing 529 n n 
CAE HAE1 Y01 sing 530 n n 
CAE HAE2 Y01 sing 531 n n 
CAE HAE3 Y01 sing 532 n n 
CAU HAU1 Y01 sing 533 n n 
CAU HAU2 Y01 sing 534 n n 
CAS HAS1 Y01 sing 535 n n 
CAS HAS2 Y01 sing 536 n n 
CBF HBF Y01 sing 537 n n 
CAK HAK1 Y01 sing 538 n n 
CAK HAK2 Y01 sing 539 n n 
CAI HAI Y01 sing 540 n n 
CAV HAV1 Y01 sing 541 n n 
CAV HAV2 Y01 sing 542 n n 
CBC HBC Y01 sing 543 n n 
CAD HAD1 Y01 sing 544 n n 
CAD HAD2 Y01 sing 545 n n 
CAD HAD3 Y01 sing 546 n n 
CAT HAT1 Y01 sing 547 n n 
CAT HAT2 Y01 sing 548 n n 
CAR HAR1 Y01 sing 549 n n 
CAR HAR2 Y01 sing 550 n n 
CAM HAM1 Y01 sing 551 n n 
CAM HAM2 Y01 sing 552 n n 
CAL HAL1 Y01 sing 553 n n 
CAL HAL2 Y01 sing 554 n n 
OAH HAH Y01 sing 555 n n 
#
_atom_sites.entry_id                     9J7D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 A 1 801 703 Y01 Y01 . 
D 3 C14 A 1 802 704 C14 C14 . 
E 2 Y01 A 1 803 701 Y01 Y01 . 
F 4 R16 A 1 804 702 R16 R16 . 
G 2 Y01 B 1 801 701 Y01 Y01 . 
H 4 R16 B 1 802 702 R16 R16 . 
I 2 Y01 B 1 803 703 Y01 Y01 . 
J 5 HOH A 1 901 3 HOH HOH . 
J 5 HOH A 2 902 4 HOH HOH . 
K 5 HOH B 1 901 2 HOH HOH . 
K 5 HOH B 2 902 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . C 2 187.067 165.629 150.455 1 75.03 ? CAA Y01 801 A 1 
HETATM 2 C CBA Y01 . . . C 2 186.906 164.134 150.712 1 85.7 ? CBA Y01 801 A 1 
HETATM 3 C CAB Y01 . . . C 2 187.729 163.326 149.714 1 82.34 ? CAB Y01 801 A 1 
HETATM 4 C CAN Y01 . . . C 2 185.443 163.691 150.659 1 83.08 ? CAN Y01 801 A 1 
HETATM 5 C CAJ Y01 . . . C 2 185.19 162.209 150.915 1 79.32 ? CAJ Y01 801 A 1 
HETATM 6 C CAO Y01 . . . C 2 185.581 161.772 152.325 1 80.37 ? CAO Y01 801 A 1 
HETATM 7 C CBB Y01 . . . C 2 184.451 161.655 153.366 1 81.48 ? CBB Y01 801 A 1 
HETATM 8 C CAC Y01 . . . C 2 183.096 162.044 152.777 1 85.25 ? CAC Y01 801 A 1 
HETATM 9 C CBE Y01 . . . C 2 184.432 160.26 154.015 1 79.76 ? CBE Y01 801 A 1 
HETATM 10 C CAP Y01 . . . C 2 185.707 159.432 153.697 1 79.72 ? CAP Y01 801 A 1 
HETATM 11 C CAQ Y01 . . . C 2 185.961 158.491 154.889 1 84.32 ? CAQ Y01 801 A 1 
HETATM 12 C CBG Y01 . . . C 2 184.77 158.714 155.809 1 83.08 ? CBG Y01 801 A 1 
HETATM 13 C CBI Y01 . . . C 2 184.31 160.159 155.557 1 84.81 ? CBI Y01 801 A 1 
HETATM 14 C CAE Y01 . . . C 2 185.221 161.201 156.212 1 80.29 ? CAE Y01 801 A 1 
HETATM 15 C CAU Y01 . . . C 2 182.904 160.215 156.153 1 82.03 ? CAU Y01 801 A 1 
HETATM 16 C CAS Y01 . . . C 2 182.924 159.91 157.654 1 81.08 ? CAS Y01 801 A 1 
HETATM 17 C CBF Y01 . . . C 2 183.611 158.593 158.044 1 79.64 ? CBF Y01 801 A 1 
HETATM 18 C CBD Y01 . . . C 2 184.925 158.366 157.28 1 75 ? CBD Y01 801 A 1 
HETATM 19 C CAK Y01 . . . C 2 185.356 156.916 157.469 1 76.97 ? CAK Y01 801 A 1 
HETATM 20 C CAI Y01 . . . C 2 185.286 156.52 158.906 1 79.41 ? CAI Y01 801 A 1 
HETATM 21 C CAZ Y01 . . . C 2 184.765 157.288 159.863 1 83.05 ? CAZ Y01 801 A 1 
HETATM 22 C CAV Y01 . . . C 2 185.003 156.954 161.314 1 78.94 ? CAV Y01 801 A 1 
HETATM 23 C CBH Y01 . . . C 2 183.846 158.458 159.568 1 81.24 ? CBH Y01 801 A 1 
HETATM 24 C CAD Y01 . . . C 2 184.448 159.75 160.143 1 80.12 ? CAD Y01 801 A 1 
HETATM 25 C CAT Y01 . . . C 2 182.534 158.124 160.299 1 79.1 ? CAT Y01 801 A 1 
HETATM 26 C CAR Y01 . . . C 2 182.717 158.003 161.807 1 77.9 ? CAR Y01 801 A 1 
HETATM 27 C CBC Y01 . . . C 2 183.761 156.971 162.206 1 79.57 ? CBC Y01 801 A 1 
HETATM 28 O OAW Y01 . . . C 2 184.164 157.332 163.538 1 82.38 ? OAW Y01 801 A 1 
HETATM 29 C CAY Y01 . . . C 2 183.575 156.781 164.596 1 80.13 ? CAY Y01 801 A 1 
HETATM 30 O OAG Y01 . . . C 2 182.578 157.23 165.106 1 81.19 ? OAG Y01 801 A 1 
HETATM 31 C CAM Y01 . . . C 2 184.319 155.558 165.057 1 79.73 ? CAM Y01 801 A 1 
HETATM 32 C CAL Y01 . . . C 2 183.572 154.742 166.093 1 81.37 ? CAL Y01 801 A 1 
HETATM 33 C CAX Y01 . . . C 2 183.889 155.093 167.559 1 84.15 ? CAX Y01 801 A 1 
HETATM 34 O OAH Y01 . . . C 2 185.065 154.889 167.92 1 83.76 ? OAH Y01 801 A 1 
HETATM 35 O OAF Y01 . . . C 2 182.965 155.544 168.265 1 82.28 ? OAF Y01 801 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#