data_9J7W
#
_model_server_result.job_id            XKQ8m01UUoD-Tv42BMjbig 
_model_server_result.datetime_utc      '2025-08-03 13:00:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9j7w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    9J7W 
#
_exptl.entry_id    9J7W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9J7W 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9J7W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 228 A LYS 254 1_555 D C15 RET . A RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 B NZ LYS 228 C LYS 254 1_555 F C15 RET . C RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 237 n n 
P O14 PC1 doub 238 n n 
P O13 PC1 sing 239 n n 
P O11 PC1 sing 240 n n 
O13 C11 PC1 sing 241 n n 
C11 C12 PC1 sing 242 n n 
C11 H111 PC1 sing 243 n n 
C11 H112 PC1 sing 244 n n 
C12 N PC1 sing 245 n n 
C12 H121 PC1 sing 246 n n 
C12 H122 PC1 sing 247 n n 
N C13 PC1 sing 248 n n 
N C14 PC1 sing 249 n n 
N C15 PC1 sing 250 n n 
C13 H131 PC1 sing 251 n n 
C13 H132 PC1 sing 252 n n 
C13 H133 PC1 sing 253 n n 
C14 H141 PC1 sing 254 n n 
C14 H142 PC1 sing 255 n n 
C14 H143 PC1 sing 256 n n 
C15 H151 PC1 sing 257 n n 
C15 H152 PC1 sing 258 n n 
C15 H153 PC1 sing 259 n n 
O11 C1 PC1 sing 260 n n 
C1 C2 PC1 sing 261 n n 
C1 H11 PC1 sing 262 n n 
C1 H12 PC1 sing 263 n n 
C2 O21 PC1 sing 264 n n 
C2 C3 PC1 sing 265 n n 
C2 H2 PC1 sing 266 n n 
O21 C21 PC1 sing 267 n n 
C21 O22 PC1 doub 268 n n 
C21 C22 PC1 sing 269 n n 
C22 C23 PC1 sing 270 n n 
C22 H221 PC1 sing 271 n n 
C22 H222 PC1 sing 272 n n 
C23 C24 PC1 sing 273 n n 
C23 H231 PC1 sing 274 n n 
C23 H232 PC1 sing 275 n n 
C24 C25 PC1 sing 276 n n 
C24 H241 PC1 sing 277 n n 
C24 H242 PC1 sing 278 n n 
C25 C26 PC1 sing 279 n n 
C25 H251 PC1 sing 280 n n 
C25 H252 PC1 sing 281 n n 
C26 C27 PC1 sing 282 n n 
C26 H261 PC1 sing 283 n n 
C26 H262 PC1 sing 284 n n 
C27 C28 PC1 sing 285 n n 
C27 H271 PC1 sing 286 n n 
C27 H272 PC1 sing 287 n n 
C28 C29 PC1 sing 288 n n 
C28 H281 PC1 sing 289 n n 
C28 H282 PC1 sing 290 n n 
C29 C2A PC1 sing 291 n n 
C29 H291 PC1 sing 292 n n 
C29 H292 PC1 sing 293 n n 
C2A C2B PC1 sing 294 n n 
C2A H2A1 PC1 sing 295 n n 
C2A H2A2 PC1 sing 296 n n 
C2B C2C PC1 sing 297 n n 
C2B H2B1 PC1 sing 298 n n 
C2B H2B2 PC1 sing 299 n n 
C2C C2D PC1 sing 300 n n 
C2C H2C1 PC1 sing 301 n n 
C2C H2C2 PC1 sing 302 n n 
C2D C2E PC1 sing 303 n n 
C2D H2D1 PC1 sing 304 n n 
C2D H2D2 PC1 sing 305 n n 
C2E C2F PC1 sing 306 n n 
C2E H2E1 PC1 sing 307 n n 
C2E H2E2 PC1 sing 308 n n 
C2F C2G PC1 sing 309 n n 
C2F H2F1 PC1 sing 310 n n 
C2F H2F2 PC1 sing 311 n n 
C2G C2H PC1 sing 312 n n 
C2G H2G1 PC1 sing 313 n n 
C2G H2G2 PC1 sing 314 n n 
C2H C2I PC1 sing 315 n n 
C2H H2H1 PC1 sing 316 n n 
C2H H2H2 PC1 sing 317 n n 
C2I H2I1 PC1 sing 318 n n 
C2I H2I2 PC1 sing 319 n n 
C2I H2I3 PC1 sing 320 n n 
C3 O31 PC1 sing 321 n n 
C3 H31 PC1 sing 322 n n 
C3 H32 PC1 sing 323 n n 
O31 C31 PC1 sing 324 n n 
C31 O32 PC1 doub 325 n n 
C31 C32 PC1 sing 326 n n 
C32 C33 PC1 sing 327 n n 
C32 H321 PC1 sing 328 n n 
C32 H322 PC1 sing 329 n n 
C33 C34 PC1 sing 330 n n 
C33 H331 PC1 sing 331 n n 
C33 H332 PC1 sing 332 n n 
C34 C35 PC1 sing 333 n n 
C34 H341 PC1 sing 334 n n 
C34 H342 PC1 sing 335 n n 
C35 C36 PC1 sing 336 n n 
C35 H351 PC1 sing 337 n n 
C35 H352 PC1 sing 338 n n 
C36 C37 PC1 sing 339 n n 
C36 H361 PC1 sing 340 n n 
C36 H362 PC1 sing 341 n n 
C37 C38 PC1 sing 342 n n 
C37 H371 PC1 sing 343 n n 
C37 H372 PC1 sing 344 n n 
C38 C39 PC1 sing 345 n n 
C38 H381 PC1 sing 346 n n 
C38 H382 PC1 sing 347 n n 
C39 C3A PC1 sing 348 n n 
C39 H391 PC1 sing 349 n n 
C39 H392 PC1 sing 350 n n 
C3A C3B PC1 sing 351 n n 
C3A H3A1 PC1 sing 352 n n 
C3A H3A2 PC1 sing 353 n n 
C3B C3C PC1 sing 354 n n 
C3B H3B1 PC1 sing 355 n n 
C3B H3B2 PC1 sing 356 n n 
C3C C3D PC1 sing 357 n n 
C3C H3C1 PC1 sing 358 n n 
C3C H3C2 PC1 sing 359 n n 
C3D C3E PC1 sing 360 n n 
C3D H3D1 PC1 sing 361 n n 
C3D H3D2 PC1 sing 362 n n 
C3E C3F PC1 sing 363 n n 
C3E H3E1 PC1 sing 364 n n 
C3E H3E2 PC1 sing 365 n n 
C3F C3G PC1 sing 366 n n 
C3F H3F1 PC1 sing 367 n n 
C3F H3F2 PC1 sing 368 n n 
C3G C3H PC1 sing 369 n n 
C3G H3G1 PC1 sing 370 n n 
C3G H3G2 PC1 sing 371 n n 
C3H C3I PC1 sing 372 n n 
C3H H3H1 PC1 sing 373 n n 
C3H H3H2 PC1 sing 374 n n 
C3I H3I1 PC1 sing 375 n n 
C3I H3I2 PC1 sing 376 n n 
C3I H3I3 PC1 sing 377 n n 
#
_atom_sites.entry_id                     9J7W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PC1 A 1 301 403 PC1 PC1 . 
D 3 RET A 1 302 301 RET CJJ . 
E 2 PC1 C 1 301 403 PC1 PC1 . 
F 3 RET C 1 302 301 RET CJJ . 
G 4 HOH A 1 401 3 HOH HOH . 
G 4 HOH A 2 402 6 HOH HOH . 
G 4 HOH A 3 403 10 HOH HOH . 
G 4 HOH A 4 404 16 HOH HOH . 
G 4 HOH A 5 405 401 HOH HOH . 
G 4 HOH A 6 406 11 HOH HOH . 
G 4 HOH A 7 407 8 HOH HOH . 
G 4 HOH A 8 408 15 HOH HOH . 
G 4 HOH A 9 409 14 HOH HOH . 
G 4 HOH A 10 410 18 HOH HOH . 
G 4 HOH A 11 411 17 HOH HOH . 
G 4 HOH A 12 412 402 HOH HOH . 
G 4 HOH A 13 413 7 HOH HOH . 
G 4 HOH A 14 414 12 HOH HOH . 
G 4 HOH A 15 415 5 HOH HOH . 
G 4 HOH A 16 416 1 HOH HOH . 
G 4 HOH A 17 417 2 HOH HOH . 
G 4 HOH A 18 418 4 HOH HOH . 
H 4 HOH C 1 401 3 HOH HOH . 
H 4 HOH C 2 402 6 HOH HOH . 
H 4 HOH C 3 403 10 HOH HOH . 
H 4 HOH C 4 404 16 HOH HOH . 
H 4 HOH C 5 405 401 HOH HOH . 
H 4 HOH C 6 406 11 HOH HOH . 
H 4 HOH C 7 407 8 HOH HOH . 
H 4 HOH C 8 408 15 HOH HOH . 
H 4 HOH C 9 409 14 HOH HOH . 
H 4 HOH C 10 410 18 HOH HOH . 
H 4 HOH C 11 411 17 HOH HOH . 
H 4 HOH C 12 412 402 HOH HOH . 
H 4 HOH C 13 413 7 HOH HOH . 
H 4 HOH C 14 414 12 HOH HOH . 
H 4 HOH C 15 415 5 HOH HOH . 
H 4 HOH C 16 416 1 HOH HOH . 
H 4 HOH C 17 417 2 HOH HOH . 
H 4 HOH C 18 418 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . C 2 121.103 131.008 124.529 1 46.39 ? O12 PC1 301 A 1 
HETATM 2 P P PC1 . . . C 2 120.549 132.185 125.255 1 46.39 ? P PC1 301 A 1 
HETATM 3 O O14 PC1 . . . C 2 119.141 132.251 125.742 1 46.39 ? O14 PC1 301 A 1 
HETATM 4 O O13 PC1 . . . C 2 121.503 132.516 126.564 1 46.39 ? O13 PC1 301 A 1 
HETATM 5 C C11 PC1 . . . C 2 120.919 132.715 127.827 1 46.39 ? C11 PC1 301 A 1 
HETATM 6 C C12 PC1 . . . C 2 121.656 133.905 128.422 1 46.39 ? C12 PC1 301 A 1 
HETATM 7 N N PC1 . . . C 2 120.881 134.738 129.402 1 46.39 ? N PC1 301 A 1 
HETATM 8 C C13 PC1 . . . C 2 121.788 135.573 130.239 1 46.39 ? C13 PC1 301 A 1 
HETATM 9 C C14 PC1 . . . C 2 119.994 135.646 128.622 1 46.39 ? C14 PC1 301 A 1 
HETATM 10 C C15 PC1 . . . C 2 120.029 133.897 130.288 1 46.39 ? C15 PC1 301 A 1 
HETATM 11 O O11 PC1 . . . C 2 120.865 133.484 124.301 1 46.39 ? O11 PC1 301 A 1 
HETATM 12 C C1 PC1 . . . C 2 121.995 133.487 123.457 1 46.39 ? C1 PC1 301 A 1 
HETATM 13 C C2 PC1 . . . C 2 121.57 133.961 122.084 1 46.39 ? C2 PC1 301 A 1 
HETATM 14 O O21 PC1 . . . C 2 120.337 133.355 121.693 1 46.39 ? O21 PC1 301 A 1 
HETATM 15 C C21 PC1 . . . C 2 119.369 134.101 121.169 1 46.39 ? C21 PC1 301 A 1 
HETATM 16 O O22 PC1 . . . C 2 119.329 135.303 121.242 1 46.39 ? O22 PC1 301 A 1 
HETATM 17 C C22 PC1 . . . C 2 118.353 133.238 120.479 1 46.39 ? C22 PC1 301 A 1 
HETATM 18 C C23 PC1 . . . C 2 117.17 134.004 119.917 1 46.39 ? C23 PC1 301 A 1 
HETATM 19 C C24 PC1 . . . C 2 116.665 133.359 118.635 1 46.39 ? C24 PC1 301 A 1 
HETATM 20 C C25 PC1 . . . C 2 117.579 133.618 117.445 1 46.39 ? C25 PC1 301 A 1 
HETATM 21 C C26 PC1 . . . C 2 116.97 133.163 116.126 1 46.39 ? C26 PC1 301 A 1 
HETATM 22 C C27 PC1 . . . C 2 115.821 134.04 115.644 1 46.39 ? C27 PC1 301 A 1 
HETATM 23 C C3 PC1 . . . C 2 122.576 133.589 121.019 1 46.39 ? C3 PC1 301 A 1 
HETATM 24 O O31 PC1 . . . C 2 121.893 133.558 119.769 1 46.39 ? O31 PC1 301 A 1 
HETATM 25 C C31 PC1 . . . C 2 122.126 134.536 118.9 1 46.39 ? C31 PC1 301 A 1 
HETATM 26 O O32 PC1 . . . C 2 122.265 135.69 119.223 1 46.39 ? O32 PC1 301 A 1 
HETATM 27 C C32 PC1 . . . C 2 122.201 134.011 117.494 1 46.39 ? C32 PC1 301 A 1 
HETATM 28 C C33 PC1 . . . C 2 122.948 134.923 116.53 1 46.39 ? C33 PC1 301 A 1 
HETATM 29 C C34 PC1 . . . C 2 123.199 134.248 115.187 1 46.39 ? C34 PC1 301 A 1 
HETATM 30 C C35 PC1 . . . C 2 121.949 134.082 114.334 1 46.39 ? C35 PC1 301 A 1 
HETATM 31 C C36 PC1 . . . C 2 121.832 135.126 113.229 1 46.39 ? C36 PC1 301 A 1 
HETATM 32 C C37 PC1 . . . C 2 122.849 134.954 112.108 1 46.39 ? C37 PC1 301 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#