data_9J7W
#
_model_server_result.job_id            U2zpqKylyUALyVl6uX6lJA 
_model_server_result.datetime_utc      '2025-08-04 06:28:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9j7w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    9J7W 
#
_exptl.entry_id    9J7W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9J7W 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9J7W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 228 A LYS 254 1_555 D C15 RET . A RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 B NZ LYS 228 C LYS 254 1_555 F C15 RET . C RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 418 n n 
C1 C6 RET sing 419 n n 
C1 C16 RET sing 420 n n 
C1 C17 RET sing 421 n n 
C2 C3 RET sing 422 n n 
C2 H21 RET sing 423 n n 
C2 H22 RET sing 424 n n 
C3 C4 RET sing 425 n n 
C3 H31 RET sing 426 n n 
C3 H32 RET sing 427 n n 
C4 C5 RET sing 428 n n 
C4 H41 RET sing 429 n n 
C4 H42 RET sing 430 n n 
C5 C6 RET doub 431 n n 
C5 C18 RET sing 432 n n 
C6 C7 RET sing 433 n n 
C7 C8 RET doub 434 e n 
C7 H7 RET sing 435 n n 
C8 C9 RET sing 436 n n 
C8 H8 RET sing 437 n n 
C9 C10 RET doub 438 e n 
C9 C19 RET sing 439 n n 
C10 C11 RET sing 440 n n 
C10 H10 RET sing 441 n n 
C11 C12 RET doub 442 e n 
C11 H11 RET sing 443 n n 
C12 C13 RET sing 444 n n 
C12 H12 RET sing 445 n n 
C13 C14 RET doub 446 e n 
C13 C20 RET sing 447 n n 
C14 C15 RET sing 448 n n 
C14 H14 RET sing 449 n n 
C15 O1 RET doub 450 n n 
C15 H15 RET sing 451 n n 
C16 H161 RET sing 452 n n 
C16 H162 RET sing 453 n n 
C16 H163 RET sing 454 n n 
C17 H171 RET sing 455 n n 
C17 H172 RET sing 456 n n 
C17 H173 RET sing 457 n n 
C18 H181 RET sing 458 n n 
C18 H182 RET sing 459 n n 
C18 H183 RET sing 460 n n 
C19 H191 RET sing 461 n n 
C19 H192 RET sing 462 n n 
C19 H193 RET sing 463 n n 
C20 H201 RET sing 464 n n 
C20 H202 RET sing 465 n n 
C20 H203 RET sing 466 n n 
#
_atom_sites.entry_id                     9J7W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PC1 A 1 301 403 PC1 PC1 . 
D 3 RET A 1 302 301 RET CJJ . 
E 2 PC1 C 1 301 403 PC1 PC1 . 
F 3 RET C 1 302 301 RET CJJ . 
G 4 HOH A 1 401 3 HOH HOH . 
G 4 HOH A 2 402 6 HOH HOH . 
G 4 HOH A 3 403 10 HOH HOH . 
G 4 HOH A 4 404 16 HOH HOH . 
G 4 HOH A 5 405 401 HOH HOH . 
G 4 HOH A 6 406 11 HOH HOH . 
G 4 HOH A 7 407 8 HOH HOH . 
G 4 HOH A 8 408 15 HOH HOH . 
G 4 HOH A 9 409 14 HOH HOH . 
G 4 HOH A 10 410 18 HOH HOH . 
G 4 HOH A 11 411 17 HOH HOH . 
G 4 HOH A 12 412 402 HOH HOH . 
G 4 HOH A 13 413 7 HOH HOH . 
G 4 HOH A 14 414 12 HOH HOH . 
G 4 HOH A 15 415 5 HOH HOH . 
G 4 HOH A 16 416 1 HOH HOH . 
G 4 HOH A 17 417 2 HOH HOH . 
G 4 HOH A 18 418 4 HOH HOH . 
H 4 HOH C 1 401 3 HOH HOH . 
H 4 HOH C 2 402 6 HOH HOH . 
H 4 HOH C 3 403 10 HOH HOH . 
H 4 HOH C 4 404 16 HOH HOH . 
H 4 HOH C 5 405 401 HOH HOH . 
H 4 HOH C 6 406 11 HOH HOH . 
H 4 HOH C 7 407 8 HOH HOH . 
H 4 HOH C 8 408 15 HOH HOH . 
H 4 HOH C 9 409 14 HOH HOH . 
H 4 HOH C 10 410 18 HOH HOH . 
H 4 HOH C 11 411 17 HOH HOH . 
H 4 HOH C 12 412 402 HOH HOH . 
H 4 HOH C 13 413 7 HOH HOH . 
H 4 HOH C 14 414 12 HOH HOH . 
H 4 HOH C 15 415 5 HOH HOH . 
H 4 HOH C 16 416 1 HOH HOH . 
H 4 HOH C 17 417 2 HOH HOH . 
H 4 HOH C 18 418 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . D 3 112.801 125.651 107.303 1 31.97 ? C1 RET 302 A 1 
HETATM 2 C C2 RET . . . D 3 111.967 126.211 106.15 1 31.97 ? C2 RET 302 A 1 
HETATM 3 C C3 RET . . . D 3 112.012 125.362 104.94 1 31.97 ? C3 RET 302 A 1 
HETATM 4 C C4 RET . . . D 3 113.442 125.257 104.435 1 31.97 ? C4 RET 302 A 1 
HETATM 5 C C5 RET . . . D 3 114.458 125.033 105.518 1 31.97 ? C5 RET 302 A 1 
HETATM 6 C C6 RET . . . D 3 114.157 125.156 106.829 1 31.97 ? C6 RET 302 A 1 
HETATM 7 C C7 RET . . . D 3 115.078 124.777 107.875 1 31.97 ? C7 RET 302 A 1 
HETATM 8 C C8 RET . . . D 3 116.149 123.947 107.783 1 31.97 ? C8 RET 302 A 1 
HETATM 9 C C9 RET . . . D 3 116.981 123.583 108.834 1 31.97 ? C9 RET 302 A 1 
HETATM 10 C C10 RET . . . D 3 118.004 122.635 108.667 1 31.97 ? C10 RET 302 A 1 
HETATM 11 C C11 RET . . . D 3 118.932 122.167 109.573 1 31.97 ? C11 RET 302 A 1 
HETATM 12 C C12 RET . . . D 3 119.915 121.245 109.293 1 31.97 ? C12 RET 302 A 1 
HETATM 13 C C13 RET . . . D 3 120.916 120.736 110.131 1 31.97 ? C13 RET 302 A 1 
HETATM 14 C C14 RET . . . D 3 121.8 119.769 109.66 1 31.97 ? C14 RET 302 A 1 
HETATM 15 C C15 RET . . . D 3 122.713 119.032 110.395 1 31.97 ? C15 RET 302 A 1 
HETATM 16 C C16 RET . . . D 3 112.033 124.485 107.943 1 31.97 ? C16 RET 302 A 1 
HETATM 17 C C17 RET . . . D 3 112.972 126.755 108.358 1 31.97 ? C17 RET 302 A 1 
HETATM 18 C C18 RET . . . D 3 115.813 124.689 104.968 1 31.97 ? C18 RET 302 A 1 
HETATM 19 C C19 RET . . . D 3 116.797 124.181 110.18 1 31.97 ? C19 RET 302 A 1 
HETATM 20 C C20 RET . . . D 3 120.992 121.279 111.508 1 31.97 ? C20 RET 302 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           760 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           20 
#