data_9J8F # _model_server_result.job_id W_mhV4-G2uUJnQJVkew2Pw _model_server_result.datetime_utc '2024-10-18 21:20:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9j8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 9J8F # _exptl.entry_id 9J8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9J8F _cell.length_a 56.472 _cell.length_b 56.472 _cell.length_c 200.285 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9J8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 9J8F _atom_sites.fract_transf_matrix[1][1] 0.017708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P33 A 1 401 1 P33 LIG . D 3 1PE B 1 401 1 1PE LIG . E 4 HOH A 1 501 60 HOH HOH . E 4 HOH A 2 502 70 HOH HOH . E 4 HOH A 3 503 65 HOH HOH . E 4 HOH A 4 504 8 HOH HOH . E 4 HOH A 5 505 19 HOH HOH . E 4 HOH A 6 506 6 HOH HOH . E 4 HOH A 7 507 82 HOH HOH . E 4 HOH A 8 508 9 HOH HOH . E 4 HOH A 9 509 47 HOH HOH . E 4 HOH A 10 510 62 HOH HOH . E 4 HOH A 11 511 25 HOH HOH . E 4 HOH A 12 512 83 HOH HOH . E 4 HOH A 13 513 69 HOH HOH . E 4 HOH A 14 514 20 HOH HOH . E 4 HOH A 15 515 31 HOH HOH . E 4 HOH A 16 516 12 HOH HOH . E 4 HOH A 17 517 21 HOH HOH . E 4 HOH A 18 518 73 HOH HOH . E 4 HOH A 19 519 23 HOH HOH . E 4 HOH A 20 520 88 HOH HOH . E 4 HOH A 21 521 15 HOH HOH . E 4 HOH A 22 522 18 HOH HOH . E 4 HOH A 23 523 35 HOH HOH . E 4 HOH A 24 524 118 HOH HOH . E 4 HOH A 25 525 119 HOH HOH . E 4 HOH A 26 526 26 HOH HOH . E 4 HOH A 27 527 94 HOH HOH . E 4 HOH A 28 528 45 HOH HOH . E 4 HOH A 29 529 22 HOH HOH . E 4 HOH A 30 530 123 HOH HOH . E 4 HOH A 31 531 75 HOH HOH . E 4 HOH A 32 532 86 HOH HOH . E 4 HOH A 33 533 120 HOH HOH . E 4 HOH A 34 534 122 HOH HOH . E 4 HOH A 35 535 89 HOH HOH . E 4 HOH A 36 536 96 HOH HOH . E 4 HOH A 37 537 95 HOH HOH . E 4 HOH A 38 538 64 HOH HOH . E 4 HOH A 39 539 87 HOH HOH . E 4 HOH A 40 540 38 HOH HOH . E 4 HOH A 41 541 121 HOH HOH . E 4 HOH A 42 542 107 HOH HOH . E 4 HOH A 43 543 124 HOH HOH . E 4 HOH A 44 544 93 HOH HOH . E 4 HOH A 45 545 92 HOH HOH . E 4 HOH A 46 546 90 HOH HOH . E 4 HOH A 47 547 91 HOH HOH . E 4 HOH A 48 548 108 HOH HOH . F 4 HOH B 1 501 7 HOH HOH . F 4 HOH B 2 502 58 HOH HOH . F 4 HOH B 3 503 5 HOH HOH . F 4 HOH B 4 504 3 HOH HOH . F 4 HOH B 5 505 11 HOH HOH . F 4 HOH B 6 506 74 HOH HOH . F 4 HOH B 7 507 33 HOH HOH . F 4 HOH B 8 508 43 HOH HOH . F 4 HOH B 9 509 128 HOH HOH . F 4 HOH B 10 510 103 HOH HOH . F 4 HOH B 11 511 44 HOH HOH . F 4 HOH B 12 512 46 HOH HOH . F 4 HOH B 13 513 4 HOH HOH . F 4 HOH B 14 514 37 HOH HOH . F 4 HOH B 15 515 61 HOH HOH . F 4 HOH B 16 516 16 HOH HOH . F 4 HOH B 17 517 116 HOH HOH . F 4 HOH B 18 518 55 HOH HOH . F 4 HOH B 19 519 13 HOH HOH . F 4 HOH B 20 520 79 HOH HOH . F 4 HOH B 21 521 29 HOH HOH . F 4 HOH B 22 522 67 HOH HOH . F 4 HOH B 23 523 17 HOH HOH . F 4 HOH B 24 524 42 HOH HOH . F 4 HOH B 25 525 32 HOH HOH . F 4 HOH B 26 526 80 HOH HOH . F 4 HOH B 27 527 127 HOH HOH . F 4 HOH B 28 528 27 HOH HOH . F 4 HOH B 29 529 24 HOH HOH . F 4 HOH B 30 530 41 HOH HOH . F 4 HOH B 31 531 81 HOH HOH . F 4 HOH B 32 532 114 HOH HOH . F 4 HOH B 33 533 105 HOH HOH . F 4 HOH B 34 534 14 HOH HOH . F 4 HOH B 35 535 28 HOH HOH . F 4 HOH B 36 536 40 HOH HOH . F 4 HOH B 37 537 34 HOH HOH . F 4 HOH B 38 538 72 HOH HOH . F 4 HOH B 39 539 77 HOH HOH . F 4 HOH B 40 540 84 HOH HOH . F 4 HOH B 41 541 57 HOH HOH . F 4 HOH B 42 542 126 HOH HOH . F 4 HOH B 43 543 100 HOH HOH . F 4 HOH B 44 544 112 HOH HOH . F 4 HOH B 45 545 66 HOH HOH . F 4 HOH B 46 546 117 HOH HOH . F 4 HOH B 47 547 106 HOH HOH . F 4 HOH B 48 548 104 HOH HOH . F 4 HOH B 49 549 110 HOH HOH . F 4 HOH B 50 550 101 HOH HOH . F 4 HOH B 51 551 97 HOH HOH . F 4 HOH B 52 552 111 HOH HOH . F 4 HOH B 53 553 125 HOH HOH . F 4 HOH B 54 554 109 HOH HOH . F 4 HOH B 55 555 102 HOH HOH . F 4 HOH B 56 556 85 HOH HOH . F 4 HOH B 57 557 113 HOH HOH . F 4 HOH B 58 558 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 3 13.319 -41.014 25.838 1 59.25 ? OH2 1PE 401 B 1 HETATM 2 C C12 1PE . . . D 3 14.193 -39.916 26.051 1 61.73 ? C12 1PE 401 B 1 HETATM 3 C C22 1PE . . . D 3 14.361 -39.645 27.51 1 55.35 ? C22 1PE 401 B 1 HETATM 4 O OH3 1PE . . . D 3 13.113 -39.373 28.137 1 57.27 ? OH3 1PE 401 B 1 HETATM 5 C C13 1PE . . . D 3 13.774 -40.206 30.284 1 44.8 ? C13 1PE 401 B 1 HETATM 6 C C23 1PE . . . D 3 13.24 -39.042 29.513 1 49.27 ? C23 1PE 401 B 1 HETATM 7 O OH4 1PE . . . D 3 14.547 -39.734 31.373 1 42.3 ? OH4 1PE 401 B 1 HETATM 8 C C14 1PE . . . D 3 14.449 -38.373 33.337 1 43.54 ? C14 1PE 401 B 1 HETATM 9 C C24 1PE . . . D 3 13.743 -39.373 32.484 1 45.29 ? C24 1PE 401 B 1 HETATM 10 O OH5 1PE . . . D 3 13.5 -37.551 33.999 1 39.33 ? OH5 1PE 401 B 1 HETATM 11 C C15 1PE . . . D 3 13.117 -38.33 36.234 1 42.73 ? C15 1PE 401 B 1 HETATM 12 C C25 1PE . . . D 3 13.818 -37.336 35.366 1 45.33 ? C25 1PE 401 B 1 HETATM 13 O OH6 1PE . . . D 3 14.037 -38.934 37.135 1 40.56 ? OH6 1PE 401 B 1 HETATM 14 C C16 1PE . . . D 3 14.7 -38.37 39.355 1 45.77 ? C16 1PE 401 B 1 HETATM 15 C C26 1PE . . . D 3 14.764 -37.989 37.908 1 46.49 ? C26 1PE 401 B 1 HETATM 16 O OH7 1PE . . . D 3 13.895 -37.465 40.093 1 46.49 ? OH7 1PE 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #