data_9JCO # _model_server_result.job_id WneGiPZKE5BDSCODayN5ug _model_server_result.datetime_utc '2025-07-16 09:49:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 9JCO # _exptl.entry_id 9JCO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JCO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 E SG CYS 9 R CYS 9 1_555 E SG CYS 258 R CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 E SG CYS 90 R CYS 90 1_555 E SG CYS 168 R CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 111 n n C1 C10 CLR sing 112 n n C1 H11 CLR sing 113 n n C1 H12 CLR sing 114 n n C2 C3 CLR sing 115 n n C2 H21 CLR sing 116 n n C2 H22 CLR sing 117 n n C3 C4 CLR sing 118 n n C3 O1 CLR sing 119 n n C3 H3 CLR sing 120 n n C4 C5 CLR sing 121 n n C4 H41 CLR sing 122 n n C4 H42 CLR sing 123 n n C5 C6 CLR doub 124 n n C5 C10 CLR sing 125 n n C6 C7 CLR sing 126 n n C6 H6 CLR sing 127 n n C7 C8 CLR sing 128 n n C7 H71 CLR sing 129 n n C7 H72 CLR sing 130 n n C8 C9 CLR sing 131 n n C8 C14 CLR sing 132 n n C8 H8 CLR sing 133 n n C9 C10 CLR sing 134 n n C9 C11 CLR sing 135 n n C9 H9 CLR sing 136 n n C10 C19 CLR sing 137 n n C11 C12 CLR sing 138 n n C11 H111 CLR sing 139 n n C11 H112 CLR sing 140 n n C12 C13 CLR sing 141 n n C12 H121 CLR sing 142 n n C12 H122 CLR sing 143 n n C13 C14 CLR sing 144 n n C13 C17 CLR sing 145 n n C13 C18 CLR sing 146 n n C14 C15 CLR sing 147 n n C14 H14 CLR sing 148 n n C15 C16 CLR sing 149 n n C15 H151 CLR sing 150 n n C15 H152 CLR sing 151 n n C16 C17 CLR sing 152 n n C16 H161 CLR sing 153 n n C16 H162 CLR sing 154 n n C17 C20 CLR sing 155 n n C17 H17 CLR sing 156 n n C18 H181 CLR sing 157 n n C18 H182 CLR sing 158 n n C18 H183 CLR sing 159 n n C19 H191 CLR sing 160 n n C19 H192 CLR sing 161 n n C19 H193 CLR sing 162 n n C20 C21 CLR sing 163 n n C20 C22 CLR sing 164 n n C20 H20 CLR sing 165 n n C21 H211 CLR sing 166 n n C21 H212 CLR sing 167 n n C21 H213 CLR sing 168 n n C22 C23 CLR sing 169 n n C22 H221 CLR sing 170 n n C22 H222 CLR sing 171 n n C23 C24 CLR sing 172 n n C23 H231 CLR sing 173 n n C23 H232 CLR sing 174 n n C24 C25 CLR sing 175 n n C24 H241 CLR sing 176 n n C24 H242 CLR sing 177 n n C25 C26 CLR sing 178 n n C25 C27 CLR sing 179 n n C25 H25 CLR sing 180 n n C26 H261 CLR sing 181 n n C26 H262 CLR sing 182 n n C26 H263 CLR sing 183 n n C27 H271 CLR sing 184 n n C27 H272 CLR sing 185 n n C27 H273 CLR sing 186 n n O1 H1 CLR sing 187 n n # _atom_sites.entry_id 9JCO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 401 1002 CLR CLR . G 6 CLR R 1 402 1003 CLR CLR . H 7 A1L35 R 1 403 3 A1L35 LIG . I 7 A1L35 R 1 404 4 A1L35 LIG . J 8 HOH A 1 401 7 HOH HOH . K 8 HOH R 1 501 1 HOH HOH . K 8 HOH R 2 502 9 HOH HOH . K 8 HOH R 3 503 15 HOH HOH . K 8 HOH R 4 504 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 6 110.168 75.973 93.5 1 55.72 ? C1 CLR 401 R 1 HETATM 2 C C2 CLR . . . F 6 111.049 76.661 94.534 1 54.75 ? C2 CLR 401 R 1 HETATM 3 C C3 CLR . . . F 6 112.462 76.879 94.024 1 57.36 ? C3 CLR 401 R 1 HETATM 4 C C4 CLR . . . F 6 112.45 77.846 92.862 1 56.34 ? C4 CLR 401 R 1 HETATM 5 C C5 CLR . . . F 6 111.466 77.191 91.776 1 55.97 ? C5 CLR 401 R 1 HETATM 6 C C6 CLR . . . F 6 111.885 77.053 90.418 1 55.85 ? C6 CLR 401 R 1 HETATM 7 C C7 CLR . . . F 6 110.943 76.417 89.361 1 56.37 ? C7 CLR 401 R 1 HETATM 8 C C8 CLR . . . F 6 109.506 76.34 89.784 1 58.06 ? C8 CLR 401 R 1 HETATM 9 C C9 CLR . . . F 6 109.391 75.719 91.14 1 58.22 ? C9 CLR 401 R 1 HETATM 10 C C10 CLR . . . F 6 110.001 76.685 92.241 1 56.43 ? C10 CLR 401 R 1 HETATM 11 C C11 CLR . . . F 6 108 75.355 91.483 1 56.53 ? C11 CLR 401 R 1 HETATM 12 C C12 CLR . . . F 6 107.188 74.612 90.489 1 54.75 ? C12 CLR 401 R 1 HETATM 13 C C13 CLR . . . F 6 107.241 75.304 89.067 1 57.64 ? C13 CLR 401 R 1 HETATM 14 C C14 CLR . . . F 6 108.767 75.428 88.749 1 55.96 ? C14 CLR 401 R 1 HETATM 15 C C15 CLR . . . F 6 108.808 75.911 87.315 1 57.55 ? C15 CLR 401 R 1 HETATM 16 C C16 CLR . . . F 6 107.525 75.122 86.727 1 59.36 ? C16 CLR 401 R 1 HETATM 17 C C17 CLR . . . F 6 106.769 74.521 87.932 1 59.27 ? C17 CLR 401 R 1 HETATM 18 C C18 CLR . . . F 6 106.538 76.706 89.128 1 52.87 ? C18 CLR 401 R 1 HETATM 19 C C19 CLR . . . F 6 109.104 77.968 92.507 1 55.84 ? C19 CLR 401 R 1 HETATM 20 C C20 CLR . . . F 6 105.214 74.577 87.689 1 59.79 ? C20 CLR 401 R 1 HETATM 21 C C21 CLR . . . F 6 104.471 74.015 88.883 1 57.83 ? C21 CLR 401 R 1 HETATM 22 C C22 CLR . . . F 6 104.827 73.749 86.477 1 55.29 ? C22 CLR 401 R 1 HETATM 23 C C23 CLR . . . F 6 103.576 74.39 85.804 1 55.72 ? C23 CLR 401 R 1 HETATM 24 C C24 CLR . . . F 6 103.177 73.569 84.54 1 58.43 ? C24 CLR 401 R 1 HETATM 25 C C25 CLR . . . F 6 101.842 72.762 84.823 1 57.72 ? C25 CLR 401 R 1 HETATM 26 C C26 CLR . . . F 6 101.278 72.225 83.498 1 55.62 ? C26 CLR 401 R 1 HETATM 27 C C27 CLR . . . F 6 102.143 71.587 85.762 1 57.66 ? C27 CLR 401 R 1 HETATM 28 O O1 CLR . . . F 6 113.256 77.413 95.065 1 57.42 ? O1 CLR 401 R 1 HETATM 29 H H11 CLR . . . F 6 109.194 75.822 93.941 1 54.36 ? H11 CLR 401 R 1 HETATM 30 H H12 CLR . . . F 6 110.606 74.995 93.283 1 54.77 ? H12 CLR 401 R 1 HETATM 31 H H21 CLR . . . F 6 111.09 76.047 95.422 1 54.16 ? H21 CLR 401 R 1 HETATM 32 H H22 CLR . . . F 6 110.611 77.629 94.788 1 53.41 ? H22 CLR 401 R 1 HETATM 33 H H3 CLR . . . F 6 112.881 75.922 93.695 1 54.47 ? H3 CLR 401 R 1 HETATM 34 H H41 CLR . . . F 6 113.448 77.828 92.431 1 54.87 ? H41 CLR 401 R 1 HETATM 35 H H42 CLR . . . F 6 111.968 78.753 93.216 1 53.88 ? H42 CLR 401 R 1 HETATM 36 H H6 CLR . . . F 6 112.873 77.396 90.122 1 54.71 ? H6 CLR 401 R 1 HETATM 37 H H71 CLR . . . F 6 111.004 77.007 88.455 1 54.65 ? H71 CLR 401 R 1 HETATM 38 H H72 CLR . . . F 6 111.29 75.422 89.151 1 54.65 ? H72 CLR 401 R 1 HETATM 39 H H8 CLR . . . F 6 109.087 77.344 89.773 1 54.24 ? H8 CLR 401 R 1 HETATM 40 H H9 CLR . . . F 6 109.984 74.8 91.134 1 55.05 ? H9 CLR 401 R 1 HETATM 41 H H111 CLR . . . F 6 107.446 76.256 91.724 1 54.23 ? H111 CLR 401 R 1 HETATM 42 H H112 CLR . . . F 6 108.038 74.737 92.381 1 54.75 ? H112 CLR 401 R 1 HETATM 43 H H121 CLR . . . F 6 106.161 74.583 90.838 1 54.61 ? H121 CLR 401 R 1 HETATM 44 H H122 CLR . . . F 6 107.574 73.588 90.404 1 54.34 ? H122 CLR 401 R 1 HETATM 45 H H14 CLR . . . F 6 109.21 74.431 88.79 1 54.46 ? H14 CLR 401 R 1 HETATM 46 H H151 CLR . . . F 6 108.668 76.982 87.259 1 54.42 ? H151 CLR 401 R 1 HETATM 47 H H152 CLR . . . F 6 109.725 75.596 86.819 1 54.64 ? H152 CLR 401 R 1 HETATM 48 H H161 CLR . . . F 6 106.875 75.817 86.191 1 54.11 ? H161 CLR 401 R 1 HETATM 49 H H162 CLR . . . F 6 107.856 74.322 86.059 1 54.69 ? H162 CLR 401 R 1 HETATM 50 H H17 CLR . . . F 6 107.075 73.489 88.062 1 54.64 ? H17 CLR 401 R 1 HETATM 51 H H181 CLR . . . F 6 107.026 77.352 89.868 1 53.17 ? H181 CLR 401 R 1 HETATM 52 H H182 CLR . . . F 6 105.502 76.582 89.421 1 53.04 ? H182 CLR 401 R 1 HETATM 53 H H183 CLR . . . F 6 106.577 77.186 88.153 1 52.86 ? H183 CLR 401 R 1 HETATM 54 H H191 CLR . . . F 6 109.731 78.772 92.9 1 53.68 ? H191 CLR 401 R 1 HETATM 55 H H192 CLR . . . F 6 108.329 77.727 93.24 1 53.71 ? H192 CLR 401 R 1 HETATM 56 H H193 CLR . . . F 6 108.63 78.303 91.579 1 52.68 ? H193 CLR 401 R 1 HETATM 57 H H20 CLR . . . F 6 104.902 75.588 87.516 1 54.17 ? H20 CLR 401 R 1 HETATM 58 H H211 CLR . . . F 6 105.067 73.24 89.345 1 54.83 ? H211 CLR 401 R 1 HETATM 59 H H212 CLR . . . F 6 103.523 73.593 88.556 1 55.13 ? H212 CLR 401 R 1 HETATM 60 H H213 CLR . . . F 6 104.28 74.8 89.599 1 54.17 ? H213 CLR 401 R 1 HETATM 61 H H221 CLR . . . F 6 104.587 72.74 86.791 1 54.5 ? H221 CLR 401 R 1 HETATM 62 H H222 CLR . . . F 6 105.642 73.713 85.755 1 54.19 ? H222 CLR 401 R 1 HETATM 63 H H231 CLR . . . F 6 103.808 75.408 85.511 1 53.63 ? H231 CLR 401 R 1 HETATM 64 H H232 CLR . . . F 6 102.741 74.397 86.516 1 54.11 ? H232 CLR 401 R 1 HETATM 65 H H241 CLR . . . F 6 103.979 72.869 84.292 1 55.08 ? H241 CLR 401 R 1 HETATM 66 H H242 CLR . . . F 6 103.019 74.245 83.706 1 53.98 ? H242 CLR 401 R 1 HETATM 67 H H25 CLR . . . F 6 101.114 73.415 85.284 1 54.43 ? H25 CLR 401 R 1 HETATM 68 H H261 CLR . . . F 6 100.354 71.673 83.693 1 54.43 ? H261 CLR 401 R 1 HETATM 69 H H262 CLR . . . F 6 102.001 71.567 83.039 1 54.47 ? H262 CLR 401 R 1 HETATM 70 H H263 CLR . . . F 6 101.068 73.058 82.829 1 53.94 ? H263 CLR 401 R 1 HETATM 71 H H271 CLR . . . F 6 103.044 71.078 85.428 1 54.89 ? H271 CLR 401 R 1 HETATM 72 H H272 CLR . . . F 6 101.306 70.889 85.752 1 55.02 ? H272 CLR 401 R 1 HETATM 73 H H273 CLR . . . F 6 102.291 71.962 86.777 1 54.42 ? H273 CLR 401 R 1 HETATM 74 H H1 CLR . . . F 6 113.804 76.743 95.411 1 54.89 ? H1 CLR 401 R 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 74 #