data_9JCO # _model_server_result.job_id NQbfrn54FCsEzTr0nl4gZQ _model_server_result.datetime_utc '2025-07-17 02:29:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 9JCO # _exptl.entry_id 9JCO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JCO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 E SG CYS 9 R CYS 9 1_555 E SG CYS 258 R CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 E SG CYS 90 R CYS 90 1_555 E SG CYS 168 R CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 111 n n C1 C10 CLR sing 112 n n C1 H11 CLR sing 113 n n C1 H12 CLR sing 114 n n C2 C3 CLR sing 115 n n C2 H21 CLR sing 116 n n C2 H22 CLR sing 117 n n C3 C4 CLR sing 118 n n C3 O1 CLR sing 119 n n C3 H3 CLR sing 120 n n C4 C5 CLR sing 121 n n C4 H41 CLR sing 122 n n C4 H42 CLR sing 123 n n C5 C6 CLR doub 124 n n C5 C10 CLR sing 125 n n C6 C7 CLR sing 126 n n C6 H6 CLR sing 127 n n C7 C8 CLR sing 128 n n C7 H71 CLR sing 129 n n C7 H72 CLR sing 130 n n C8 C9 CLR sing 131 n n C8 C14 CLR sing 132 n n C8 H8 CLR sing 133 n n C9 C10 CLR sing 134 n n C9 C11 CLR sing 135 n n C9 H9 CLR sing 136 n n C10 C19 CLR sing 137 n n C11 C12 CLR sing 138 n n C11 H111 CLR sing 139 n n C11 H112 CLR sing 140 n n C12 C13 CLR sing 141 n n C12 H121 CLR sing 142 n n C12 H122 CLR sing 143 n n C13 C14 CLR sing 144 n n C13 C17 CLR sing 145 n n C13 C18 CLR sing 146 n n C14 C15 CLR sing 147 n n C14 H14 CLR sing 148 n n C15 C16 CLR sing 149 n n C15 H151 CLR sing 150 n n C15 H152 CLR sing 151 n n C16 C17 CLR sing 152 n n C16 H161 CLR sing 153 n n C16 H162 CLR sing 154 n n C17 C20 CLR sing 155 n n C17 H17 CLR sing 156 n n C18 H181 CLR sing 157 n n C18 H182 CLR sing 158 n n C18 H183 CLR sing 159 n n C19 H191 CLR sing 160 n n C19 H192 CLR sing 161 n n C19 H193 CLR sing 162 n n C20 C21 CLR sing 163 n n C20 C22 CLR sing 164 n n C20 H20 CLR sing 165 n n C21 H211 CLR sing 166 n n C21 H212 CLR sing 167 n n C21 H213 CLR sing 168 n n C22 C23 CLR sing 169 n n C22 H221 CLR sing 170 n n C22 H222 CLR sing 171 n n C23 C24 CLR sing 172 n n C23 H231 CLR sing 173 n n C23 H232 CLR sing 174 n n C24 C25 CLR sing 175 n n C24 H241 CLR sing 176 n n C24 H242 CLR sing 177 n n C25 C26 CLR sing 178 n n C25 C27 CLR sing 179 n n C25 H25 CLR sing 180 n n C26 H261 CLR sing 181 n n C26 H262 CLR sing 182 n n C26 H263 CLR sing 183 n n C27 H271 CLR sing 184 n n C27 H272 CLR sing 185 n n C27 H273 CLR sing 186 n n O1 H1 CLR sing 187 n n # _atom_sites.entry_id 9JCO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 401 1002 CLR CLR . G 6 CLR R 1 402 1003 CLR CLR . H 7 A1L35 R 1 403 3 A1L35 LIG . I 7 A1L35 R 1 404 4 A1L35 LIG . J 8 HOH A 1 401 7 HOH HOH . K 8 HOH R 1 501 1 HOH HOH . K 8 HOH R 2 502 9 HOH HOH . K 8 HOH R 3 503 15 HOH HOH . K 8 HOH R 4 504 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 6 82.686 94.479 90.341 1 54.05 ? C1 CLR 402 R 1 HETATM 2 C C2 CLR . . . G 6 82.501 94.963 91.778 1 55.88 ? C2 CLR 402 R 1 HETATM 3 C C3 CLR . . . G 6 83.236 96.251 92.131 1 57.93 ? C3 CLR 402 R 1 HETATM 4 C C4 CLR . . . G 6 84.568 96.366 91.423 1 56.81 ? C4 CLR 402 R 1 HETATM 5 C C5 CLR . . . G 6 84.25 96.312 89.852 1 52.87 ? C5 CLR 402 R 1 HETATM 6 C C6 CLR . . . G 6 85.1 96.943 88.895 1 50.01 ? C6 CLR 402 R 1 HETATM 7 C C7 CLR . . . G 6 84.786 96.867 87.371 1 52.62 ? C7 CLR 402 R 1 HETATM 8 C C8 CLR . . . G 6 83.625 95.994 86.972 1 53.62 ? C8 CLR 402 R 1 HETATM 9 C C9 CLR . . . G 6 83.408 94.877 87.948 1 54.4 ? C9 CLR 402 R 1 HETATM 10 C C10 CLR . . . G 6 82.966 95.491 89.336 1 54.88 ? C10 CLR 402 R 1 HETATM 11 C C11 CLR . . . G 6 82.441 93.864 87.477 1 55.07 ? C11 CLR 402 R 1 HETATM 12 C C12 CLR . . . G 6 82.561 93.355 86.086 1 53.04 ? C12 CLR 402 R 1 HETATM 13 C C13 CLR . . . G 6 82.756 94.53 85.047 1 54.66 ? C13 CLR 402 R 1 HETATM 14 C C14 CLR . . . G 6 83.96 95.368 85.581 1 51.64 ? C14 CLR 402 R 1 HETATM 15 C C15 CLR . . . G 6 84.251 96.36 84.472 1 53.99 ? C15 CLR 402 R 1 HETATM 16 C C16 CLR . . . G 6 83.833 95.482 83.177 1 52.18 ? C16 CLR 402 R 1 HETATM 17 C C17 CLR . . . G 6 83.258 94.155 83.736 1 52.03 ? C17 CLR 402 R 1 HETATM 18 C C18 CLR . . . G 6 81.432 95.368 84.95 1 55.72 ? C18 CLR 402 R 1 HETATM 19 C C19 CLR . . . G 6 81.721 96.468 89.199 1 52.39 ? C19 CLR 402 R 1 HETATM 20 C C20 CLR . . . G 6 82.179 93.431 82.836 1 53.23 ? C20 CLR 402 R 1 HETATM 21 C C21 CLR . . . G 6 82.875 92.321 82.072 1 54.84 ? C21 CLR 402 R 1 HETATM 22 C C22 CLR . . . G 6 81.489 94.344 81.835 1 55.11 ? C22 CLR 402 R 1 HETATM 23 C C23 CLR . . . G 6 80.301 93.601 81.152 1 54.1 ? C23 CLR 402 R 1 HETATM 24 C C24 CLR . . . G 6 79.439 94.626 80.353 1 55.05 ? C24 CLR 402 R 1 HETATM 25 C C25 CLR . . . G 6 78.058 93.961 79.949 1 56.12 ? C25 CLR 402 R 1 HETATM 26 C C26 CLR . . . G 6 77.144 95.022 79.315 1 52.98 ? C26 CLR 402 R 1 HETATM 27 C C27 CLR . . . G 6 78.31 92.837 78.936 1 54.06 ? C27 CLR 402 R 1 HETATM 28 O O1 CLR . . . G 6 82.434 97.362 91.782 1 57.26 ? O1 CLR 402 R 1 HETATM 29 H H11 CLR . . . G 6 81.781 93.963 90.055 1 52.78 ? H11 CLR 402 R 1 HETATM 30 H H12 CLR . . . G 6 83.51 93.761 90.333 1 51.85 ? H12 CLR 402 R 1 HETATM 31 H H21 CLR . . . G 6 82.842 94.185 92.445 1 52.71 ? H21 CLR 402 R 1 HETATM 32 H H22 CLR . . . G 6 81.435 95.124 91.948 1 52.86 ? H22 CLR 402 R 1 HETATM 33 H H3 CLR . . . G 6 83.413 96.266 93.213 1 52.25 ? H3 CLR 402 R 1 HETATM 34 H H41 CLR . . . G 6 85.118 95.457 91.656 1 52.25 ? H41 CLR 402 R 1 HETATM 35 H H42 CLR . . . G 6 84.951 97.361 91.633 1 52.2 ? H42 CLR 402 R 1 HETATM 36 H H6 CLR . . . G 6 85.974 97.493 89.235 1 50.51 ? H6 CLR 402 R 1 HETATM 37 H H71 CLR . . . G 6 84.584 97.872 87.021 1 51.71 ? H71 CLR 402 R 1 HETATM 38 H H72 CLR . . . G 6 85.664 96.503 86.871 1 50.95 ? H72 CLR 402 R 1 HETATM 39 H H8 CLR . . . G 6 82.741 96.62 86.879 1 52.56 ? H8 CLR 402 R 1 HETATM 40 H H9 CLR . . . G 6 84.367 94.373 88.097 1 52.06 ? H9 CLR 402 R 1 HETATM 41 H H111 CLR . . . G 6 81.436 94.257 87.599 1 53.03 ? H111 CLR 402 R 1 HETATM 42 H H112 CLR . . . G 6 82.539 92.997 88.131 1 52.82 ? H112 CLR 402 R 1 HETATM 43 H H121 CLR . . . G 6 81.659 92.805 85.832 1 52.35 ? H121 CLR 402 R 1 HETATM 44 H H122 CLR . . . G 6 83.425 92.681 86.028 1 51.97 ? H122 CLR 402 R 1 HETATM 45 H H14 CLR . . . G 6 84.822 94.709 85.695 1 51.26 ? H14 CLR 402 R 1 HETATM 46 H H151 CLR . . . G 6 83.628 97.241 84.564 1 52.68 ? H151 CLR 402 R 1 HETATM 47 H H152 CLR . . . G 6 85.308 96.62 84.446 1 51.11 ? H152 CLR 402 R 1 HETATM 48 H H161 CLR . . . G 6 83.101 96.048 82.602 1 52.39 ? H161 CLR 402 R 1 HETATM 49 H H162 CLR . . . G 6 84.716 95.277 82.566 1 50.74 ? H162 CLR 402 R 1 HETATM 50 H H17 CLR . . . G 6 84.09 93.476 83.884 1 51.2 ? H17 CLR 402 R 1 HETATM 51 H H181 CLR . . . G 6 81.102 95.67 85.953 1 52.63 ? H181 CLR 402 R 1 HETATM 52 H H182 CLR . . . G 6 80.649 94.766 84.503 1 52.65 ? H182 CLR 402 R 1 HETATM 53 H H183 CLR . . . G 6 81.589 96.258 84.345 1 53.11 ? H183 CLR 402 R 1 HETATM 54 H H191 CLR . . . G 6 82.076 97.501 89.164 1 52.45 ? H191 CLR 402 R 1 HETATM 55 H H192 CLR . . . G 6 81.055 96.345 90.057 1 52.27 ? H192 CLR 402 R 1 HETATM 56 H H193 CLR . . . G 6 81.161 96.249 88.283 1 52.39 ? H193 CLR 402 R 1 HETATM 57 H H20 CLR . . . G 6 81.436 92.99 83.472 1 52.51 ? H20 CLR 402 R 1 HETATM 58 H H211 CLR . . . G 6 82.138 91.668 81.625 1 52.69 ? H211 CLR 402 R 1 HETATM 59 H H212 CLR . . . G 6 83.496 91.74 82.75 1 52.04 ? H212 CLR 402 R 1 HETATM 60 H H213 CLR . . . G 6 83.493 92.75 81.297 1 51.76 ? H213 CLR 402 R 1 HETATM 61 H H221 CLR . . . G 6 82.2 94.646 81.076 1 52.91 ? H221 CLR 402 R 1 HETATM 62 H H222 CLR . . . G 6 81.104 95.228 82.34 1 52.66 ? H222 CLR 402 R 1 HETATM 63 H H231 CLR . . . G 6 79.688 93.124 81.908 1 52.8 ? H231 CLR 402 R 1 HETATM 64 H H232 CLR . . . G 6 80.688 92.841 80.46 1 52.43 ? H232 CLR 402 R 1 HETATM 65 H H241 CLR . . . G 6 79.976 94.928 79.45 1 52.93 ? H241 CLR 402 R 1 HETATM 66 H H242 CLR . . . G 6 79.252 95.499 80.97 1 52.7 ? H242 CLR 402 R 1 HETATM 67 H H25 CLR . . . G 6 77.581 93.554 80.829 1 52.92 ? H25 CLR 402 R 1 HETATM 68 H H261 CLR . . . G 6 76.974 95.832 80.031 1 52.28 ? H261 CLR 402 R 1 HETATM 69 H H262 CLR . . . G 6 77.614 95.419 78.428 1 52.66 ? H262 CLR 402 R 1 HETATM 70 H H263 CLR . . . G 6 76.19 94.568 79.049 1 52.99 ? H263 CLR 402 R 1 HETATM 71 H H271 CLR . . . G 6 77.379 92.589 78.431 1 52.71 ? H271 CLR 402 R 1 HETATM 72 H H272 CLR . . . G 6 78.687 91.956 79.456 1 52.67 ? H272 CLR 402 R 1 HETATM 73 H H273 CLR . . . G 6 79.046 93.168 78.201 1 52.66 ? H273 CLR 402 R 1 HETATM 74 H H1 CLR . . . G 6 82.977 98.054 91.476 1 52.74 ? H1 CLR 402 R 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 535 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 74 #