data_9JCO # _model_server_result.job_id vUgPUXuUXdNDlgVgPusITA _model_server_result.datetime_utc '2025-07-18 00:42:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":404}' # _entry.id 9JCO # _exptl.entry_id 9JCO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 300.266 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[(2~{R})-3-acetyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JCO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 E SG CYS 9 R CYS 9 1_555 E SG CYS 258 R CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 E SG CYS 90 R CYS 90 1_555 E SG CYS 168 R CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H23 N O7 P 1' _chem_comp.formula_weight 300.266 _chem_comp.id A1L35 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[(2~{R})-3-acetyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 A1L35 sing 1 n n C02 O03 A1L35 doub 2 n n C02 O04 A1L35 sing 3 n n O04 C05 A1L35 sing 4 n n C05 C06 A1L35 sing 5 n n O19 C06 A1L35 sing 6 n n O10 P09 A1L35 doub 7 n n C06 C07 A1L35 sing 8 n n C07 O08 A1L35 sing 9 n n P09 O08 A1L35 sing 10 n n P09 O11 A1L35 sing 11 n n P09 O12 A1L35 sing 12 n n C13 O12 A1L35 sing 13 n n C13 C14 A1L35 sing 14 n n C18 N15 A1L35 sing 15 n n C17 N15 A1L35 sing 16 n n N15 C14 A1L35 sing 17 n n N15 C16 A1L35 sing 18 n n C13 H1 A1L35 sing 19 n n C13 H2 A1L35 sing 20 n n C17 H3 A1L35 sing 21 n n C17 H4 A1L35 sing 22 n n C17 H5 A1L35 sing 23 n n C01 H6 A1L35 sing 24 n n C01 H7 A1L35 sing 25 n n C01 H8 A1L35 sing 26 n n C05 H9 A1L35 sing 27 n n C05 H10 A1L35 sing 28 n n C06 H11 A1L35 sing 29 n n C07 H12 A1L35 sing 30 n n C07 H13 A1L35 sing 31 n n C14 H14 A1L35 sing 32 n n C14 H15 A1L35 sing 33 n n C16 H16 A1L35 sing 34 n n C16 H17 A1L35 sing 35 n n C16 H18 A1L35 sing 36 n n C18 H19 A1L35 sing 37 n n C18 H20 A1L35 sing 38 n n C18 H21 A1L35 sing 39 n n O11 H22 A1L35 sing 40 n n O19 H23 A1L35 sing 41 n n # _atom_sites.entry_id 9JCO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 401 1002 CLR CLR . G 6 CLR R 1 402 1003 CLR CLR . H 7 A1L35 R 1 403 3 A1L35 LIG . I 7 A1L35 R 1 404 4 A1L35 LIG . J 8 HOH A 1 401 7 HOH HOH . K 8 HOH R 1 501 1 HOH HOH . K 8 HOH R 2 502 9 HOH HOH . K 8 HOH R 3 503 15 HOH HOH . K 8 HOH R 4 504 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 A1L35 . . . I 7 111.159 98.213 92.035 1 20 ? C13 A1L35 404 R 1 HETATM 2 C C17 A1L35 . . . I 7 113.77 97.132 91.74 1 20 ? C17 A1L35 404 R 1 HETATM 3 C C01 A1L35 . . . I 7 102.265 101.121 87.589 1 20 ? C01 A1L35 404 R 1 HETATM 4 C C02 A1L35 . . . I 7 103.249 102.027 88.324 1 20 ? C02 A1L35 404 R 1 HETATM 5 C C05 A1L35 . . . I 7 105.133 100.815 88.867 1 20 ? C05 A1L35 404 R 1 HETATM 6 C C06 A1L35 . . . I 7 105.916 100.275 90.051 1 20 ? C06 A1L35 404 R 1 HETATM 7 C C07 A1L35 . . . I 7 107.278 99.767 89.607 1 20 ? C07 A1L35 404 R 1 HETATM 8 C C14 A1L35 . . . I 7 111.457 96.726 92.191 1 20 ? C14 A1L35 404 R 1 HETATM 9 C C16 A1L35 . . . I 7 113.031 96.789 93.985 1 20 ? C16 A1L35 404 R 1 HETATM 10 C C18 A1L35 . . . I 7 113.079 95.021 92.429 1 20 ? C18 A1L35 404 R 1 HETATM 11 N N15 A1L35 . . . I 7 112.824 96.436 92.592 1 20 1 N15 A1L35 404 R 1 HETATM 12 O O03 A1L35 . . . I 7 103.38 103.168 88.027 1 20 ? O03 A1L35 404 R 1 HETATM 13 O O04 A1L35 . . . I 7 104.02 101.495 89.355 1 20 ? O04 A1L35 404 R 1 HETATM 14 O O08 A1L35 . . . I 7 108.133 99.748 90.711 1 20 ? O08 A1L35 404 R 1 HETATM 15 O O10 A1L35 . . . I 7 109.191 97.536 90.018 1 20 ? O10 A1L35 404 R 1 HETATM 16 O O11 A1L35 . . . I 7 107.474 97.517 91.758 1 20 -1 O11 A1L35 404 R 1 HETATM 17 O O12 A1L35 . . . I 7 109.817 98.413 92.358 1 20 ? O12 A1L35 404 R 1 HETATM 18 O O19 A1L35 . . . I 7 105.187 99.206 90.589 1 20 ? O19 A1L35 404 R 1 HETATM 19 P P09 A1L35 . . . I 7 108.654 98.274 91.21 1 20 ? P09 A1L35 404 R 1 HETATM 20 H H1 A1L35 . . . I 7 111.348 98.522 91.013 1 20 ? H1 A1L35 404 R 1 HETATM 21 H H2 A1L35 . . . I 7 111.772 98.799 92.709 1 20 ? H2 A1L35 404 R 1 HETATM 22 H H3 A1L35 . . . I 7 113.411 97.11 90.715 1 20 ? H3 A1L35 404 R 1 HETATM 23 H H4 A1L35 . . . I 7 113.884 98.161 92.069 1 20 ? H4 A1L35 404 R 1 HETATM 24 H H5 A1L35 . . . I 7 114.731 96.63 91.793 1 20 ? H5 A1L35 404 R 1 HETATM 25 H H6 A1L35 . . . I 7 101.437 101.71 87.208 1 20 ? H6 A1L35 404 R 1 HETATM 26 H H7 A1L35 . . . I 7 102.774 100.628 86.765 1 20 ? H7 A1L35 404 R 1 HETATM 27 H H8 A1L35 . . . I 7 101.887 100.369 88.277 1 20 ? H8 A1L35 404 R 1 HETATM 28 H H9 A1L35 . . . I 7 104.813 99.992 88.238 1 20 ? H9 A1L35 404 R 1 HETATM 29 H H10 A1L35 . . . I 7 105.755 101.494 88.294 1 20 ? H10 A1L35 404 R 1 HETATM 30 H H11 A1L35 . . . I 7 106.038 101.05 90.796 1 20 ? H11 A1L35 404 R 1 HETATM 31 H H12 A1L35 . . . I 7 107.161 98.771 89.196 1 20 ? H12 A1L35 404 R 1 HETATM 32 H H13 A1L35 . . . I 7 107.679 100.428 88.846 1 20 ? H13 A1L35 404 R 1 HETATM 33 H H14 A1L35 . . . I 7 110.781 96.317 92.934 1 20 ? H14 A1L35 404 R 1 HETATM 34 H H15 A1L35 . . . I 7 111.276 96.237 91.243 1 20 ? H15 A1L35 404 R 1 HETATM 35 H H16 A1L35 . . . I 7 113.205 97.856 94.073 1 20 ? H16 A1L35 404 R 1 HETATM 36 H H17 A1L35 . . . I 7 112.147 96.522 94.557 1 20 ? H17 A1L35 404 R 1 HETATM 37 H H18 A1L35 . . . I 7 113.888 96.245 94.372 1 20 ? H18 A1L35 404 R 1 HETATM 38 H H19 A1L35 . . . I 7 112.955 94.743 91.386 1 20 ? H19 A1L35 404 R 1 HETATM 39 H H20 A1L35 . . . I 7 114.088 94.791 92.755 1 20 ? H20 A1L35 404 R 1 HETATM 40 H H21 A1L35 . . . I 7 112.382 94.467 93.034 1 20 ? H21 A1L35 404 R 1 HETATM 41 H H23 A1L35 . . . I 7 105.776 98.583 90.983 1 20 ? H23 A1L35 404 R 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #