data_9JCP
#
_model_server_result.job_id            73zcl8FiQ6uLHRHziDNvMg 
_model_server_result.datetime_utc      '2025-07-15 00:45:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9jcp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":403}' 
#
_entry.id    9JCP 
#
_exptl.entry_id    9JCP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              300.266 
_entity.id                          7 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[[(2~{R})-3-acetyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9JCP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9JCP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 22 N CYS 22 1_555 C SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf2 C SG CYS 99 N CYS 99 1_555 C SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf3 D SG CYS 9 R CYS 9 1_555 D SG CYS 258 R CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 D SG CYS 90 R CYS 90 1_555 D SG CYS 168 R CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C10 H23 N O7 P 1' 
_chem_comp.formula_weight    300.266 
_chem_comp.id                A1L35 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[[(2~{R})-3-acetyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 A1L35 sing 1 n n 
C02 O03 A1L35 doub 2 n n 
C02 O04 A1L35 sing 3 n n 
O04 C05 A1L35 sing 4 n n 
C05 C06 A1L35 sing 5 n n 
O19 C06 A1L35 sing 6 n n 
O10 P09 A1L35 doub 7 n n 
C06 C07 A1L35 sing 8 n n 
C07 O08 A1L35 sing 9 n n 
P09 O08 A1L35 sing 10 n n 
P09 O11 A1L35 sing 11 n n 
P09 O12 A1L35 sing 12 n n 
C13 O12 A1L35 sing 13 n n 
C13 C14 A1L35 sing 14 n n 
C18 N15 A1L35 sing 15 n n 
C17 N15 A1L35 sing 16 n n 
N15 C14 A1L35 sing 17 n n 
N15 C16 A1L35 sing 18 n n 
C13 H1 A1L35 sing 19 n n 
C13 H2 A1L35 sing 20 n n 
C17 H3 A1L35 sing 21 n n 
C17 H4 A1L35 sing 22 n n 
C17 H5 A1L35 sing 23 n n 
C01 H6 A1L35 sing 24 n n 
C01 H7 A1L35 sing 25 n n 
C01 H8 A1L35 sing 26 n n 
C05 H9 A1L35 sing 27 n n 
C05 H10 A1L35 sing 28 n n 
C06 H11 A1L35 sing 29 n n 
C07 H12 A1L35 sing 30 n n 
C07 H13 A1L35 sing 31 n n 
C14 H14 A1L35 sing 32 n n 
C14 H15 A1L35 sing 33 n n 
C16 H16 A1L35 sing 34 n n 
C16 H17 A1L35 sing 35 n n 
C16 H18 A1L35 sing 36 n n 
C18 H19 A1L35 sing 37 n n 
C18 H20 A1L35 sing 38 n n 
C18 H21 A1L35 sing 39 n n 
O11 H22 A1L35 sing 40 n n 
O19 H23 A1L35 sing 41 n n 
#
_atom_sites.entry_id                     9JCP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 CLR R 1 401 401 CLR CLR . 
G 7 A1L35 R 1 402 402 A1L35 LIG . 
H 7 A1L35 R 1 403 403 A1L35 LIG . 
I 8 HOH R 1 501 11 HOH HOH . 
I 8 HOH R 2 502 8 HOH HOH . 
I 8 HOH R 3 503 10 HOH HOH . 
I 8 HOH R 4 504 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 A1L35 . . . H 7 110.18 98.854 88.438 1 34.48 ? C13 A1L35 403 R 1 
HETATM 2 C C17 A1L35 . . . H 7 112.042 98.458 90.877 1 32.16 ? C17 A1L35 403 R 1 
HETATM 3 C C01 A1L35 . . . H 7 102.783 104.037 83.111 1 38.57 ? C01 A1L35 403 R 1 
HETATM 4 C C02 A1L35 . . . H 7 104.265 104.24 82.801 1 41.64 ? C02 A1L35 403 R 1 
HETATM 5 C C05 A1L35 . . . H 7 105.189 102.648 84.278 1 39.05 ? C05 A1L35 403 R 1 
HETATM 6 C C06 A1L35 . . . H 7 106.432 102.426 85.138 1 40.3 ? C06 A1L35 403 R 1 
HETATM 7 C C07 A1L35 . . . H 7 106.228 101.325 86.176 1 36.31 ? C07 A1L35 403 R 1 
HETATM 8 C C14 A1L35 . . . H 7 111.67 99.158 88.608 1 37.07 ? C14 A1L35 403 R 1 
HETATM 9 C C16 A1L35 . . . H 7 112.059 96.832 89.142 1 37.19 ? C16 A1L35 403 R 1 
HETATM 10 C C18 A1L35 . . . H 7 113.796 98.414 89.307 1 42.12 ? C18 A1L35 403 R 1 
HETATM 11 N N15 A1L35 . . . H 7 112.366 98.214 89.479 1 39.9 ? N15 A1L35 403 R 1 
HETATM 12 O O03 A1L35 . . . H 7 104.591 104.658 81.741 1 41.53 ? O03 A1L35 403 R 1 
HETATM 13 O O04 A1L35 . . . H 7 105.242 103.946 83.761 1 40.37 ? O04 A1L35 403 R 1 
HETATM 14 O O08 A1L35 . . . H 7 107.38 101.246 86.963 1 34.58 ? O08 A1L35 403 R 1 
HETATM 15 O O10 A1L35 . . . H 7 108.267 99.117 85.808 1 39.07 ? O10 A1L35 403 R 1 
HETATM 16 O O11 A1L35 . . . H 7 107.228 98.906 88.035 1 39.77 ? O11 A1L35 403 R 1 
HETATM 17 O O12 A1L35 . . . H 7 109.571 99.973 87.862 1 38.32 ? O12 A1L35 403 R 1 
HETATM 18 O O19 A1L35 . . . H 7 106.718 103.619 85.817 1 37.62 ? O19 A1L35 403 R 1 
HETATM 19 P P09 A1L35 . . . H 7 108.096 99.775 87.156 1 46.41 ? P09 A1L35 403 R 1 
HETATM 20 H H1 A1L35 . . . H 7 109.719 98.65 89.398 1 34.95 ? H1 A1L35 403 R 1 
HETATM 21 H H2 A1L35 . . . H 7 110.05 97.999 87.783 1 35.54 ? H2 A1L35 403 R 1 
HETATM 22 H H3 A1L35 . . . H 7 112.619 97.781 91.498 1 35.48 ? H3 A1L35 403 R 1 
HETATM 23 H H4 A1L35 . . . H 7 112.293 99.481 91.134 1 36.23 ? H4 A1L35 403 R 1 
HETATM 24 H H5 A1L35 . . . H 7 110.987 98.289 91.054 1 34.98 ? H5 A1L35 403 R 1 
HETATM 25 H H6 A1L35 . . . H 7 102.66 103.7 84.135 1 37.35 ? H6 A1L35 403 R 1 
HETATM 26 H H7 A1L35 . . . H 7 102.256 104.977 82.981 1 37.18 ? H7 A1L35 403 R 1 
HETATM 27 H H8 A1L35 . . . H 7 102.37 103.296 82.434 1 37 ? H8 A1L35 403 R 1 
HETATM 28 H H9 A1L35 . . . H 7 105.166 101.928 83.467 1 36.28 ? H9 A1L35 403 R 1 
HETATM 29 H H10 A1L35 . . . H 7 104.306 102.532 84.896 1 36.88 ? H10 A1L35 403 R 1 
HETATM 30 H H11 A1L35 . . . H 7 107.268 102.169 84.499 1 36.96 ? H11 A1L35 403 R 1 
HETATM 31 H H12 A1L35 . . . H 7 106.06 100.376 85.677 1 35.73 ? H12 A1L35 403 R 1 
HETATM 32 H H13 A1L35 . . . H 7 105.374 101.564 86.802 1 37.06 ? H13 A1L35 403 R 1 
HETATM 33 H H14 A1L35 . . . H 7 112.136 99.139 87.631 1 36.65 ? H14 A1L35 403 R 1 
HETATM 34 H H15 A1L35 . . . H 7 111.776 100.154 89.02 1 36.55 ? H15 A1L35 403 R 1 
HETATM 35 H H16 A1L35 . . . H 7 112.686 96.174 89.733 1 36.22 ? H16 A1L35 403 R 1 
HETATM 36 H H17 A1L35 . . . H 7 111.02 96.612 89.359 1 35.94 ? H17 A1L35 403 R 1 
HETATM 37 H H18 A1L35 . . . H 7 112.257 96.662 88.089 1 35.5 ? H18 A1L35 403 R 1 
HETATM 38 H H19 A1L35 . . . H 7 114.338 97.736 89.958 1 37.05 ? H19 A1L35 403 R 1 
HETATM 39 H H20 A1L35 . . . H 7 114.071 98.218 88.276 1 36.48 ? H20 A1L35 403 R 1 
HETATM 40 H H21 A1L35 . . . H 7 114.051 99.437 89.56 1 37.68 ? H21 A1L35 403 R 1 
HETATM 41 H H23 A1L35 . . . H 7 107.479 103.499 86.359 1 36.65 ? H23 A1L35 403 R 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           41 
#