data_9JCQ
#
_model_server_result.job_id            rHvbSEygg2y3xSvIAN40SQ 
_model_server_result.datetime_utc      '2025-07-16 23:58:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9jcq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1001}' 
#
_entry.id    9JCQ 
#
_exptl.entry_id    9JCQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              300.266 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[[(2~{R})-3-acetyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9JCQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9JCQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 126 B CYS 126 1_555 B SG CYS 154 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 E SG CYS 9 D CYS 9 1_555 E SG CYS 258 D CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 E SG CYS 90 D CYS 90 1_555 E SG CYS 168 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C10 H23 N O7 P 1' 
_chem_comp.formula_weight    300.266 
_chem_comp.id                A1L35 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[[(2~{R})-3-acetyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 A1L35 sing 1 n n 
C02 O03 A1L35 doub 2 n n 
C02 O04 A1L35 sing 3 n n 
O04 C05 A1L35 sing 4 n n 
C05 C06 A1L35 sing 5 n n 
O19 C06 A1L35 sing 6 n n 
O10 P09 A1L35 doub 7 n n 
C06 C07 A1L35 sing 8 n n 
C07 O08 A1L35 sing 9 n n 
P09 O08 A1L35 sing 10 n n 
P09 O11 A1L35 sing 11 n n 
P09 O12 A1L35 sing 12 n n 
C13 O12 A1L35 sing 13 n n 
C13 C14 A1L35 sing 14 n n 
C18 N15 A1L35 sing 15 n n 
C17 N15 A1L35 sing 16 n n 
N15 C14 A1L35 sing 17 n n 
N15 C16 A1L35 sing 18 n n 
C13 H1 A1L35 sing 19 n n 
C13 H2 A1L35 sing 20 n n 
C17 H3 A1L35 sing 21 n n 
C17 H4 A1L35 sing 22 n n 
C17 H5 A1L35 sing 23 n n 
C01 H6 A1L35 sing 24 n n 
C01 H7 A1L35 sing 25 n n 
C01 H8 A1L35 sing 26 n n 
C05 H9 A1L35 sing 27 n n 
C05 H10 A1L35 sing 28 n n 
C06 H11 A1L35 sing 29 n n 
C07 H12 A1L35 sing 30 n n 
C07 H13 A1L35 sing 31 n n 
C14 H14 A1L35 sing 32 n n 
C14 H15 A1L35 sing 33 n n 
C16 H16 A1L35 sing 34 n n 
C16 H17 A1L35 sing 35 n n 
C16 H18 A1L35 sing 36 n n 
C18 H19 A1L35 sing 37 n n 
C18 H20 A1L35 sing 38 n n 
C18 H21 A1L35 sing 39 n n 
O11 H22 A1L35 sing 40 n n 
O19 H23 A1L35 sing 41 n n 
#
_atom_sites.entry_id                     9JCQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 A1L35 D 1 1001 1001 A1L35 LIG . 
G 6 A1L35 D 1 1002 1002 A1L35 LIG . 
H 7 CLR D 1 1003 401 CLR CLR . 
I 7 CLR D 1 1004 402 CLR CLR . 
J 8 HOH D 1 1101 3 HOH HOH . 
J 8 HOH D 2 1102 1 HOH HOH . 
J 8 HOH D 3 1103 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 A1L35 . . . F 6 108.65 112.767 89.947 1 56.6 ? C13 A1L35 1001 D 1 
HETATM 2 C C17 A1L35 . . . F 6 107.182 112.808 87.217 1 55.96 ? C17 A1L35 1001 D 1 
HETATM 3 C C01 A1L35 . . . F 6 108.802 116.439 100.171 1 55.59 ? C01 A1L35 1001 D 1 
HETATM 4 C C02 A1L35 . . . F 6 108.128 115.212 99.561 1 59.62 ? C02 A1L35 1001 D 1 
HETATM 5 C C05 A1L35 . . . F 6 108.61 114.482 97.386 1 57.77 ? C05 A1L35 1001 D 1 
HETATM 6 C C06 A1L35 . . . F 6 108.027 114.469 95.975 1 59.04 ? C06 A1L35 1001 D 1 
HETATM 7 C C07 A1L35 . . . F 6 108.936 113.764 94.97 1 59.25 ? C07 A1L35 1001 D 1 
HETATM 8 C C14 A1L35 . . . F 6 107.959 111.65 89.164 1 60.16 ? C14 A1L35 1001 D 1 
HETATM 9 C C16 A1L35 . . . F 6 109.466 112.15 87.368 1 60.12 ? C16 A1L35 1001 D 1 
HETATM 10 C C18 A1L35 . . . F 6 107.788 110.518 87.108 1 57.67 ? C18 A1L35 1001 D 1 
HETATM 11 N N15 A1L35 . . . F 6 108.101 111.797 87.721 1 62.59 ? N15 A1L35 1001 D 1 
HETATM 12 O O03 A1L35 . . . F 6 107.922 114.256 100.229 1 61.01 ? O03 A1L35 1001 D 1 
HETATM 13 O O04 A1L35 . . . F 6 107.753 115.217 98.213 1 57.78 ? O04 A1L35 1001 D 1 
HETATM 14 O O08 A1L35 . . . F 6 108.177 113.432 93.843 1 60.03 ? O08 A1L35 1001 D 1 
HETATM 15 O O10 A1L35 . . . F 6 110.281 113.526 92.356 1 63.65 ? O10 A1L35 1001 D 1 
HETATM 16 O O11 A1L35 . . . F 6 108.532 115.233 92.032 1 60.95 ? O11 A1L35 1001 D 1 
HETATM 17 O O12 A1L35 . . . F 6 108.074 112.828 91.221 1 56.69 ? O12 A1L35 1001 D 1 
HETATM 18 O O19 A1L35 . . . F 6 107.868 115.797 95.559 1 55.98 ? O19 A1L35 1001 D 1 
HETATM 19 P P09 A1L35 . . . F 6 108.793 113.782 92.356 1 72.83 ? P09 A1L35 1001 D 1 
HETATM 20 H H1 A1L35 . . . F 6 108.519 113.72 89.447 1 55.77 ? H1 A1L35 1001 D 1 
HETATM 21 H H2 A1L35 . . . F 6 109.708 112.547 90.043 1 55.28 ? H2 A1L35 1001 D 1 
HETATM 22 H H3 A1L35 . . . F 6 106.177 112.594 87.565 1 55.1 ? H3 A1L35 1001 D 1 
HETATM 23 H H4 A1L35 . . . F 6 107.478 113.79 87.571 1 55.67 ? H4 A1L35 1001 D 1 
HETATM 24 H H5 A1L35 . . . F 6 107.196 112.804 86.131 1 55.31 ? H5 A1L35 1001 D 1 
HETATM 25 H H6 A1L35 . . . F 6 109.879 116.343 100.081 1 54.71 ? H6 A1L35 1001 D 1 
HETATM 26 H H7 A1L35 . . . F 6 108.532 116.515 101.22 1 54.29 ? H7 A1L35 1001 D 1 
HETATM 27 H H8 A1L35 . . . F 6 108.473 117.331 99.647 1 55.17 ? H8 A1L35 1001 D 1 
HETATM 28 H H9 A1L35 . . . F 6 109.591 114.947 97.372 1 55.29 ? H9 A1L35 1001 D 1 
HETATM 29 H H10 A1L35 . . . F 6 108.693 113.466 97.756 1 54.28 ? H10 A1L35 1001 D 1 
HETATM 30 H H11 A1L35 . . . F 6 107.062 113.979 95.99 1 55.36 ? H11 A1L35 1001 D 1 
HETATM 31 H H12 A1L35 . . . F 6 109.745 114.427 94.682 1 55.89 ? H12 A1L35 1001 D 1 
HETATM 32 H H13 A1L35 . . . F 6 109.343 112.863 95.416 1 54.72 ? H13 A1L35 1001 D 1 
HETATM 33 H H14 A1L35 . . . F 6 108.391 110.7 89.461 1 55.47 ? H14 A1L35 1001 D 1 
HETATM 34 H H15 A1L35 . . . F 6 106.904 111.646 89.419 1 55.66 ? H15 A1L35 1001 D 1 
HETATM 35 H H16 A1L35 . . . F 6 109.62 113.218 87.495 1 56.07 ? H16 A1L35 1001 D 1 
HETATM 36 H H17 A1L35 . . . F 6 110.159 111.606 88.002 1 54.74 ? H17 A1L35 1001 D 1 
HETATM 37 H H18 A1L35 . . . F 6 109.647 111.884 86.331 1 55.24 ? H18 A1L35 1001 D 1 
HETATM 38 H H19 A1L35 . . . F 6 107.589 110.654 86.049 1 54.79 ? H19 A1L35 1001 D 1 
HETATM 39 H H20 A1L35 . . . F 6 106.914 110.088 87.589 1 55.37 ? H20 A1L35 1001 D 1 
HETATM 40 H H21 A1L35 . . . F 6 108.633 109.846 87.229 1 54.21 ? H21 A1L35 1001 D 1 
HETATM 41 H H23 A1L35 . . . F 6 107.024 115.899 95.147 1 55.21 ? H23 A1L35 1001 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           41 
#