data_9JCQ # _model_server_result.job_id 5Lxy0q8pfoOwmcr5_UFtIw _model_server_result.datetime_utc '2025-07-14 19:43:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1004}' # _entry.id 9JCQ # _exptl.entry_id 9JCQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JCQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 126 1_555 B SG CYS 154 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 E SG CYS 9 D CYS 9 1_555 E SG CYS 258 D CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 E SG CYS 90 D CYS 90 1_555 E SG CYS 168 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 111 n n C1 C10 CLR sing 112 n n C1 H11 CLR sing 113 n n C1 H12 CLR sing 114 n n C2 C3 CLR sing 115 n n C2 H21 CLR sing 116 n n C2 H22 CLR sing 117 n n C3 C4 CLR sing 118 n n C3 O1 CLR sing 119 n n C3 H3 CLR sing 120 n n C4 C5 CLR sing 121 n n C4 H41 CLR sing 122 n n C4 H42 CLR sing 123 n n C5 C6 CLR doub 124 n n C5 C10 CLR sing 125 n n C6 C7 CLR sing 126 n n C6 H6 CLR sing 127 n n C7 C8 CLR sing 128 n n C7 H71 CLR sing 129 n n C7 H72 CLR sing 130 n n C8 C9 CLR sing 131 n n C8 C14 CLR sing 132 n n C8 H8 CLR sing 133 n n C9 C10 CLR sing 134 n n C9 C11 CLR sing 135 n n C9 H9 CLR sing 136 n n C10 C19 CLR sing 137 n n C11 C12 CLR sing 138 n n C11 H111 CLR sing 139 n n C11 H112 CLR sing 140 n n C12 C13 CLR sing 141 n n C12 H121 CLR sing 142 n n C12 H122 CLR sing 143 n n C13 C14 CLR sing 144 n n C13 C17 CLR sing 145 n n C13 C18 CLR sing 146 n n C14 C15 CLR sing 147 n n C14 H14 CLR sing 148 n n C15 C16 CLR sing 149 n n C15 H151 CLR sing 150 n n C15 H152 CLR sing 151 n n C16 C17 CLR sing 152 n n C16 H161 CLR sing 153 n n C16 H162 CLR sing 154 n n C17 C20 CLR sing 155 n n C17 H17 CLR sing 156 n n C18 H181 CLR sing 157 n n C18 H182 CLR sing 158 n n C18 H183 CLR sing 159 n n C19 H191 CLR sing 160 n n C19 H192 CLR sing 161 n n C19 H193 CLR sing 162 n n C20 C21 CLR sing 163 n n C20 C22 CLR sing 164 n n C20 H20 CLR sing 165 n n C21 H211 CLR sing 166 n n C21 H212 CLR sing 167 n n C21 H213 CLR sing 168 n n C22 C23 CLR sing 169 n n C22 H221 CLR sing 170 n n C22 H222 CLR sing 171 n n C23 C24 CLR sing 172 n n C23 H231 CLR sing 173 n n C23 H232 CLR sing 174 n n C24 C25 CLR sing 175 n n C24 H241 CLR sing 176 n n C24 H242 CLR sing 177 n n C25 C26 CLR sing 178 n n C25 C27 CLR sing 179 n n C25 H25 CLR sing 180 n n C26 H261 CLR sing 181 n n C26 H262 CLR sing 182 n n C26 H263 CLR sing 183 n n C27 H271 CLR sing 184 n n C27 H272 CLR sing 185 n n C27 H273 CLR sing 186 n n O1 H1 CLR sing 187 n n # _atom_sites.entry_id 9JCQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 A1L35 D 1 1001 1001 A1L35 LIG . G 6 A1L35 D 1 1002 1002 A1L35 LIG . H 7 CLR D 1 1003 401 CLR CLR . I 7 CLR D 1 1004 402 CLR CLR . J 8 HOH D 1 1101 3 HOH HOH . J 8 HOH D 2 1102 1 HOH HOH . J 8 HOH D 3 1103 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . I 7 121.84 90.879 101.201 1 58.43 ? C1 CLR 1004 D 1 HETATM 2 C C2 CLR . . . I 7 122.839 91.354 102.26 1 55.91 ? C2 CLR 1004 D 1 HETATM 3 C C3 CLR . . . I 7 123.858 92.315 101.7 1 58.51 ? C3 CLR 1004 D 1 HETATM 4 C C4 CLR . . . I 7 123.146 93.48 101.047 1 58.39 ? C4 CLR 1004 D 1 HETATM 5 C C5 CLR . . . I 7 122.198 93.001 99.973 1 59.11 ? C5 CLR 1004 D 1 HETATM 6 C C6 CLR . . . I 7 122.335 93.405 98.723 1 58.36 ? C6 CLR 1004 D 1 HETATM 7 C C7 CLR . . . I 7 121.351 93.157 97.628 1 57.97 ? C7 CLR 1004 D 1 HETATM 8 C C8 CLR . . . I 7 120.096 92.432 98.095 1 55.48 ? C8 CLR 1004 D 1 HETATM 9 C C9 CLR . . . I 7 120.428 91.399 99.183 1 58.44 ? C9 CLR 1004 D 1 HETATM 10 C C10 CLR . . . I 7 121.132 92.012 100.422 1 60.53 ? C10 CLR 1004 D 1 HETATM 11 C C11 CLR . . . I 7 119.187 90.568 99.545 1 59.15 ? C11 CLR 1004 D 1 HETATM 12 C C12 CLR . . . I 7 118.54 89.898 98.326 1 58.59 ? C12 CLR 1004 D 1 HETATM 13 C C13 CLR . . . I 7 118.191 90.912 97.232 1 60.36 ? C13 CLR 1004 D 1 HETATM 14 C C14 CLR . . . I 7 119.478 91.697 96.919 1 57.08 ? C14 CLR 1004 D 1 HETATM 15 C C15 CLR . . . I 7 119.138 92.485 95.659 1 59.58 ? C15 CLR 1004 D 1 HETATM 16 C C16 CLR . . . I 7 118.234 91.524 94.866 1 59.49 ? C16 CLR 1004 D 1 HETATM 17 C C17 CLR . . . I 7 117.895 90.343 95.814 1 59.8 ? C17 CLR 1004 D 1 HETATM 18 C C18 CLR . . . I 7 117.045 91.831 97.686 1 60 ? C18 CLR 1004 D 1 HETATM 19 C C19 CLR . . . I 7 120.144 92.748 101.343 1 60.11 ? C19 CLR 1004 D 1 HETATM 20 C C20 CLR . . . I 7 116.516 89.739 95.503 1 59.43 ? C20 CLR 1004 D 1 HETATM 21 C C21 CLR . . . I 7 116.257 88.429 96.242 1 56.78 ? C21 CLR 1004 D 1 HETATM 22 C C22 CLR . . . I 7 116.359 89.548 93.988 1 59.83 ? C22 CLR 1004 D 1 HETATM 23 C C23 CLR . . . I 7 114.96 89.24 93.525 1 60.91 ? C23 CLR 1004 D 1 HETATM 24 C C24 CLR . . . I 7 114.881 88.949 92.048 1 61.46 ? C24 CLR 1004 D 1 HETATM 25 C C25 CLR . . . I 7 113.477 88.712 91.494 1 62.45 ? C25 CLR 1004 D 1 HETATM 26 C C26 CLR . . . I 7 112.656 89.992 91.491 1 59.35 ? C26 CLR 1004 D 1 HETATM 27 C C27 CLR . . . I 7 113.529 88.109 90.101 1 60.02 ? C27 CLR 1004 D 1 HETATM 28 O O1 CLR . . . I 7 124.71 92.803 102.744 1 58.79 ? O1 CLR 1004 D 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #