data_9JD2 # _model_server_result.job_id fPjJmD3BgAmsF9YKFJnr6Q _model_server_result.datetime_utc '2024-11-22 10:42:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 9JD2 # _exptl.entry_id 9JD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9JD2 _cell.length_a 79.048 _cell.length_b 79.048 _cell.length_c 233.48 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -39.524 -68.457576 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 39.524 -68.457576 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 143 A CYS 143 1_555 A SG CYS 210 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 205 A CYS 205 1_555 A SG CYS 266 A CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 264 A CYS 264 1_555 A SG CYS 267 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 297 n n P O2 PO4 sing 298 n n P O3 PO4 sing 299 n n P O4 PO4 sing 300 n n # _atom_sites.entry_id 9JD2 _atom_sites.fract_transf_matrix[1][1] 0.012651 _atom_sites.fract_transf_matrix[1][2] 0.007304 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 400 400 PO4 PO4 . C 3 MTA A 1 401 401 MTA MTA . D 4 HOH A 1 501 29 HOH HOH . D 4 HOH A 2 502 24 HOH HOH . D 4 HOH A 3 503 44 HOH HOH . D 4 HOH A 4 504 42 HOH HOH . D 4 HOH A 5 505 43 HOH HOH . D 4 HOH A 6 506 33 HOH HOH . D 4 HOH A 7 507 46 HOH HOH . D 4 HOH A 8 508 41 HOH HOH . D 4 HOH A 9 509 21 HOH HOH . D 4 HOH A 10 510 25 HOH HOH . D 4 HOH A 11 511 38 HOH HOH . D 4 HOH A 12 512 16 HOH HOH . D 4 HOH A 13 513 30 HOH HOH . D 4 HOH A 14 514 22 HOH HOH . D 4 HOH A 15 515 12 HOH HOH . D 4 HOH A 16 516 47 HOH HOH . D 4 HOH A 17 517 31 HOH HOH . D 4 HOH A 18 518 39 HOH HOH . D 4 HOH A 19 519 32 HOH HOH . D 4 HOH A 20 520 8 HOH HOH . D 4 HOH A 21 521 17 HOH HOH . D 4 HOH A 22 522 45 HOH HOH . D 4 HOH A 23 523 14 HOH HOH . D 4 HOH A 24 524 15 HOH HOH . D 4 HOH A 25 525 7 HOH HOH . D 4 HOH A 26 526 19 HOH HOH . D 4 HOH A 27 527 37 HOH HOH . D 4 HOH A 28 528 11 HOH HOH . D 4 HOH A 29 529 20 HOH HOH . D 4 HOH A 30 530 4 HOH HOH . D 4 HOH A 31 531 18 HOH HOH . D 4 HOH A 32 532 13 HOH HOH . D 4 HOH A 33 533 23 HOH HOH . D 4 HOH A 34 534 3 HOH HOH . D 4 HOH A 35 535 5 HOH HOH . D 4 HOH A 36 536 1 HOH HOH . D 4 HOH A 37 537 9 HOH HOH . D 4 HOH A 38 538 10 HOH HOH . D 4 HOH A 39 539 26 HOH HOH . D 4 HOH A 40 540 34 HOH HOH . D 4 HOH A 41 541 35 HOH HOH . D 4 HOH A 42 542 6 HOH HOH . D 4 HOH A 43 543 2 HOH HOH . D 4 HOH A 44 544 36 HOH HOH . D 4 HOH A 45 545 27 HOH HOH . D 4 HOH A 46 546 28 HOH HOH . D 4 HOH A 47 547 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 10.455 -28.384 -21.299 1 18.6 ? P PO4 400 A 1 HETATM 2 O O1 PO4 . . . B 2 10.882 -28.728 -22.757 1 19.87 ? O1 PO4 400 A 1 HETATM 3 O O2 PO4 . . . B 2 10.663 -29.651 -20.51 1 25.17 ? O2 PO4 400 A 1 HETATM 4 O O3 PO4 . . . B 2 11.324 -27.258 -20.794 1 17.53 ? O3 PO4 400 A 1 HETATM 5 O O4 PO4 . . . B 2 8.98 -27.992 -21.285 1 25.34 ? O4 PO4 400 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #