data_9JD3 # _model_server_result.job_id MkyosktlKNdaHsZ1opCCTw _model_server_result.datetime_utc '2025-07-20 17:04:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":706}' # _entry.id 9JD3 # _exptl.entry_id 9JD3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 142.282 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JD3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 N N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 162 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 162 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 171 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 171 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 160 n n C1 H11 D10 sing 161 n n C1 H12 D10 sing 162 n n C1 H13 D10 sing 163 n n C2 C3 D10 sing 164 n n C2 H21 D10 sing 165 n n C2 H22 D10 sing 166 n n C3 C4 D10 sing 167 n n C3 H31 D10 sing 168 n n C3 H32 D10 sing 169 n n C4 C5 D10 sing 170 n n C4 H41 D10 sing 171 n n C4 H42 D10 sing 172 n n C5 C6 D10 sing 173 n n C5 H51 D10 sing 174 n n C5 H52 D10 sing 175 n n C6 C7 D10 sing 176 n n C6 H61 D10 sing 177 n n C6 H62 D10 sing 178 n n C7 C8 D10 sing 179 n n C7 H71 D10 sing 180 n n C7 H72 D10 sing 181 n n C8 C9 D10 sing 182 n n C8 H81 D10 sing 183 n n C8 H82 D10 sing 184 n n C9 C10 D10 sing 185 n n C9 H91 D10 sing 186 n n C9 H92 D10 sing 187 n n C10 H101 D10 sing 188 n n C10 H102 D10 sing 189 n n C10 H103 D10 sing 190 n n # _atom_sites.entry_id 9JD3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D12 A 1 701 601 D12 D12 . C 3 LNK A 1 702 602 LNK LNK . D 4 OCT A 1 703 603 OCT OCT . E 4 OCT A 1 704 604 OCT OCT . F 4 OCT A 1 705 605 OCT OCT . G 5 D10 A 1 706 606 D10 D10 . H 6 HEX A 1 707 607 HEX HEX . I 6 HEX A 1 708 608 HEX HEX . J 6 HEX A 1 709 609 HEX HEX . K 6 HEX A 1 710 610 HEX HEX . L 4 OCT A 1 711 611 OCT OCT . M 2 D12 A 1 712 612 D12 D12 . N 5 D10 A 1 713 613 D10 D10 . O 2 D12 A 1 714 614 D12 D12 . P 6 HEX A 1 715 615 HEX HEX . Q 6 HEX A 1 716 616 HEX HEX . R 6 HEX A 1 717 617 HEX HEX . S 7 CLR A 1 718 618 CLR CLR . T 8 CL A 1 719 701 CL CL . U 9 NAG A 1 720 702 NAG NAG . V 10 HOH A 1 801 623 HOH HOH . V 10 HOH A 2 802 622 HOH HOH . V 10 HOH A 3 803 621 HOH HOH . V 10 HOH A 4 804 627 HOH HOH . V 10 HOH A 5 805 625 HOH HOH . V 10 HOH A 6 806 624 HOH HOH . V 10 HOH A 7 807 626 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . G 5 123.33 103.39 132.43 1 74.17 ? C1 D10 706 A 1 HETATM 2 C C2 D10 . . . G 5 121.822 103.59 132.383 1 79.58 ? C2 D10 706 A 1 HETATM 3 C C3 D10 . . . G 5 121.229 103.926 133.745 1 78.85 ? C3 D10 706 A 1 HETATM 4 C C4 D10 . . . G 5 119.735 103.649 133.827 1 76.29 ? C4 D10 706 A 1 HETATM 5 C C5 D10 . . . G 5 119.246 103.421 135.251 1 71.49 ? C5 D10 706 A 1 HETATM 6 C C6 D10 . . . G 5 117.897 102.717 135.319 1 75.34 ? C6 D10 706 A 1 HETATM 7 C C7 D10 . . . G 5 116.851 103.318 134.388 1 78.27 ? C7 D10 706 A 1 HETATM 8 C C8 D10 . . . G 5 115.424 102.969 134.791 1 78.37 ? C8 D10 706 A 1 HETATM 9 C C9 D10 . . . G 5 114.391 103.308 133.725 1 75.36 ? C9 D10 706 A 1 HETATM 10 C C10 D10 . . . G 5 114.553 104.718 133.177 1 71.85 ? C10 D10 706 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #