data_9JD3 # _model_server_result.job_id WIdxnV7IKquCGZIwA_DJUA _model_server_result.datetime_utc '2025-07-20 20:45:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":710}' # _entry.id 9JD3 # _exptl.entry_id 9JD3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 86.175 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JD3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 P N N ? 6 Q N N ? 6 R N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 162 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 162 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 171 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 171 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14' _chem_comp.formula_weight 86.175 _chem_comp.id HEX _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HEX sing 274 n n C1 H11 HEX sing 275 n n C1 H12 HEX sing 276 n n C1 H13 HEX sing 277 n n C2 C3 HEX sing 278 n n C2 H21 HEX sing 279 n n C2 H22 HEX sing 280 n n C3 C4 HEX sing 281 n n C3 H31 HEX sing 282 n n C3 H32 HEX sing 283 n n C4 C5 HEX sing 284 n n C4 H41 HEX sing 285 n n C4 H42 HEX sing 286 n n C5 C6 HEX sing 287 n n C5 H51 HEX sing 288 n n C5 H52 HEX sing 289 n n C6 H61 HEX sing 290 n n C6 H62 HEX sing 291 n n C6 H63 HEX sing 292 n n # _atom_sites.entry_id 9JD3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D12 A 1 701 601 D12 D12 . C 3 LNK A 1 702 602 LNK LNK . D 4 OCT A 1 703 603 OCT OCT . E 4 OCT A 1 704 604 OCT OCT . F 4 OCT A 1 705 605 OCT OCT . G 5 D10 A 1 706 606 D10 D10 . H 6 HEX A 1 707 607 HEX HEX . I 6 HEX A 1 708 608 HEX HEX . J 6 HEX A 1 709 609 HEX HEX . K 6 HEX A 1 710 610 HEX HEX . L 4 OCT A 1 711 611 OCT OCT . M 2 D12 A 1 712 612 D12 D12 . N 5 D10 A 1 713 613 D10 D10 . O 2 D12 A 1 714 614 D12 D12 . P 6 HEX A 1 715 615 HEX HEX . Q 6 HEX A 1 716 616 HEX HEX . R 6 HEX A 1 717 617 HEX HEX . S 7 CLR A 1 718 618 CLR CLR . T 8 CL A 1 719 701 CL CL . U 9 NAG A 1 720 702 NAG NAG . V 10 HOH A 1 801 623 HOH HOH . V 10 HOH A 2 802 622 HOH HOH . V 10 HOH A 3 803 621 HOH HOH . V 10 HOH A 4 804 627 HOH HOH . V 10 HOH A 5 805 625 HOH HOH . V 10 HOH A 6 806 624 HOH HOH . V 10 HOH A 7 807 626 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HEX . . . K 6 130.663 112.885 101.131 1 76.57 ? C1 HEX 710 A 1 HETATM 2 C C2 HEX . . . K 6 131.875 113.499 100.444 1 78.85 ? C2 HEX 710 A 1 HETATM 3 C C3 HEX . . . K 6 132.924 112.461 100.07 1 79.75 ? C3 HEX 710 A 1 HETATM 4 C C4 HEX . . . K 6 132.506 111.572 98.906 1 81.48 ? C4 HEX 710 A 1 HETATM 5 C C5 HEX . . . K 6 133.301 110.276 98.818 1 82.72 ? C5 HEX 710 A 1 HETATM 6 C C6 HEX . . . K 6 132.93 109.282 99.91 1 79.66 ? C6 HEX 710 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 1025 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #