data_9JD3 # _model_server_result.job_id YYunIy3tnCfIVn_-LhWg-A _model_server_result.datetime_utc '2025-07-20 16:59:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":718}' # _entry.id 9JD3 # _exptl.entry_id 9JD3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JD3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 162 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 162 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 171 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 171 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 9JD3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D12 A 1 701 601 D12 D12 . C 3 LNK A 1 702 602 LNK LNK . D 4 OCT A 1 703 603 OCT OCT . E 4 OCT A 1 704 604 OCT OCT . F 4 OCT A 1 705 605 OCT OCT . G 5 D10 A 1 706 606 D10 D10 . H 6 HEX A 1 707 607 HEX HEX . I 6 HEX A 1 708 608 HEX HEX . J 6 HEX A 1 709 609 HEX HEX . K 6 HEX A 1 710 610 HEX HEX . L 4 OCT A 1 711 611 OCT OCT . M 2 D12 A 1 712 612 D12 D12 . N 5 D10 A 1 713 613 D10 D10 . O 2 D12 A 1 714 614 D12 D12 . P 6 HEX A 1 715 615 HEX HEX . Q 6 HEX A 1 716 616 HEX HEX . R 6 HEX A 1 717 617 HEX HEX . S 7 CLR A 1 718 618 CLR CLR . T 8 CL A 1 719 701 CL CL . U 9 NAG A 1 720 702 NAG NAG . V 10 HOH A 1 801 623 HOH HOH . V 10 HOH A 2 802 622 HOH HOH . V 10 HOH A 3 803 621 HOH HOH . V 10 HOH A 4 804 627 HOH HOH . V 10 HOH A 5 805 625 HOH HOH . V 10 HOH A 6 806 624 HOH HOH . V 10 HOH A 7 807 626 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . S 7 143.186 146.43 132.165 1 111.25 ? C1 CLR 718 A 1 HETATM 2 C C2 CLR . . . S 7 142.478 146.436 130.817 1 107.56 ? C2 CLR 718 A 1 HETATM 3 C C3 CLR . . . S 7 142.871 147.66 130.016 1 110.13 ? C3 CLR 718 A 1 HETATM 4 C C4 CLR . . . S 7 144.387 147.715 129.848 1 110.41 ? C4 CLR 718 A 1 HETATM 5 C C5 CLR . . . S 7 145.111 147.619 131.164 1 112.32 ? C5 CLR 718 A 1 HETATM 6 C C6 CLR . . . S 7 146.182 148.372 131.406 1 111.26 ? C6 CLR 718 A 1 HETATM 7 C C7 CLR . . . S 7 147.074 148.231 132.596 1 110.42 ? C7 CLR 718 A 1 HETATM 8 C C8 CLR . . . S 7 146.847 146.933 133.365 1 111.13 ? C8 CLR 718 A 1 HETATM 9 C C9 CLR . . . S 7 145.346 146.633 133.457 1 113.7 ? C9 CLR 718 A 1 HETATM 10 C C10 CLR . . . S 7 144.724 146.453 132.052 1 116.39 ? C10 CLR 718 A 1 HETATM 11 C C11 CLR . . . S 7 145.072 145.46 134.403 1 110.02 ? C11 CLR 718 A 1 HETATM 12 C C12 CLR . . . S 7 145.752 145.59 135.768 1 110.76 ? C12 CLR 718 A 1 HETATM 13 C C13 CLR . . . S 7 147.266 145.791 135.654 1 116.2 ? C13 CLR 718 A 1 HETATM 14 C C14 CLR . . . S 7 147.442 147.031 134.759 1 115.26 ? C14 CLR 718 A 1 HETATM 15 C C15 CLR . . . S 7 148.919 147.379 134.869 1 114.02 ? C15 CLR 718 A 1 HETATM 16 C C16 CLR . . . S 7 149.241 147.059 136.34 1 113.76 ? C16 CLR 718 A 1 HETATM 17 C C17 CLR . . . S 7 148.02 146.294 136.928 1 114.35 ? C17 CLR 718 A 1 HETATM 18 C C18 CLR . . . S 7 147.933 144.568 135.012 1 111.91 ? C18 CLR 718 A 1 HETATM 19 C C19 CLR . . . S 7 145.214 145.167 131.378 1 115.3 ? C19 CLR 718 A 1 HETATM 20 C C20 CLR . . . S 7 148.475 145.4 138.11 1 111.86 ? C20 CLR 718 A 1 HETATM 21 C C21 CLR . . . S 7 149.855 144.763 137.917 1 110.86 ? C21 CLR 718 A 1 HETATM 22 C C22 CLR . . . S 7 147.428 144.343 138.509 1 111.25 ? C22 CLR 718 A 1 HETATM 23 C C23 CLR . . . S 7 147.979 143.069 139.142 1 112.88 ? C23 CLR 718 A 1 HETATM 24 C C24 CLR . . . S 7 146.884 142.205 139.756 1 112.57 ? C24 CLR 718 A 1 HETATM 25 C C25 CLR . . . S 7 146.287 142.746 141.055 1 114.34 ? C25 CLR 718 A 1 HETATM 26 C C26 CLR . . . S 7 147.391 142.974 142.083 1 110.9 ? C26 CLR 718 A 1 HETATM 27 C C27 CLR . . . S 7 145.223 141.813 141.628 1 111.93 ? C27 CLR 718 A 1 HETATM 28 O O1 CLR . . . S 7 142.207 147.605 128.773 1 112.81 ? O1 CLR 718 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #