data_9JD3 # _model_server_result.job_id FszTW1hdvHi4GfUsQq2Qiw _model_server_result.datetime_utc '2025-07-20 16:59:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9jd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":720}' # _entry.id 9JD3 # _exptl.entry_id 9JD3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 9 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9JD3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9JD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 162 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 162 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 171 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 171 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 417 n n C1 O1 NAG sing 418 n n C1 O5 NAG sing 419 n n C1 H1 NAG sing 420 n n C2 C3 NAG sing 421 n n C2 N2 NAG sing 422 n n C2 H2 NAG sing 423 n n C3 C4 NAG sing 424 n n C3 O3 NAG sing 425 n n C3 H3 NAG sing 426 n n C4 C5 NAG sing 427 n n C4 O4 NAG sing 428 n n C4 H4 NAG sing 429 n n C5 C6 NAG sing 430 n n C5 O5 NAG sing 431 n n C5 H5 NAG sing 432 n n C6 O6 NAG sing 433 n n C6 H61 NAG sing 434 n n C6 H62 NAG sing 435 n n C7 C8 NAG sing 436 n n C7 N2 NAG sing 437 n n C7 O7 NAG doub 438 n n C8 H81 NAG sing 439 n n C8 H82 NAG sing 440 n n C8 H83 NAG sing 441 n n N2 HN2 NAG sing 442 n n O1 HO1 NAG sing 443 n n O3 HO3 NAG sing 444 n n O4 HO4 NAG sing 445 n n O6 HO6 NAG sing 446 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9JD3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D12 A 1 701 601 D12 D12 . C 3 LNK A 1 702 602 LNK LNK . D 4 OCT A 1 703 603 OCT OCT . E 4 OCT A 1 704 604 OCT OCT . F 4 OCT A 1 705 605 OCT OCT . G 5 D10 A 1 706 606 D10 D10 . H 6 HEX A 1 707 607 HEX HEX . I 6 HEX A 1 708 608 HEX HEX . J 6 HEX A 1 709 609 HEX HEX . K 6 HEX A 1 710 610 HEX HEX . L 4 OCT A 1 711 611 OCT OCT . M 2 D12 A 1 712 612 D12 D12 . N 5 D10 A 1 713 613 D10 D10 . O 2 D12 A 1 714 614 D12 D12 . P 6 HEX A 1 715 615 HEX HEX . Q 6 HEX A 1 716 616 HEX HEX . R 6 HEX A 1 717 617 HEX HEX . S 7 CLR A 1 718 618 CLR CLR . T 8 CL A 1 719 701 CL CL . U 9 NAG A 1 720 702 NAG NAG . V 10 HOH A 1 801 623 HOH HOH . V 10 HOH A 2 802 622 HOH HOH . V 10 HOH A 3 803 621 HOH HOH . V 10 HOH A 4 804 627 HOH HOH . V 10 HOH A 5 805 625 HOH HOH . V 10 HOH A 6 806 624 HOH HOH . V 10 HOH A 7 807 626 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . U 9 157.068 123.072 116.947 1 30 ? C1 NAG 720 A 1 HETATM 2 C C2 NAG . . . U 9 158.112 123.597 117.936 1 30 ? C2 NAG 720 A 1 HETATM 3 C C3 NAG . . . U 9 158.124 122.753 119.214 1 30 ? C3 NAG 720 A 1 HETATM 4 C C4 NAG . . . U 9 156.714 122.563 119.766 1 30 ? C4 NAG 720 A 1 HETATM 5 C C5 NAG . . . U 9 155.809 122.064 118.651 1 30 ? C5 NAG 720 A 1 HETATM 6 C C6 NAG . . . U 9 154.393 121.827 119.143 1 30 ? C6 NAG 720 A 1 HETATM 7 C C7 NAG . . . U 9 159.958 124.662 116.715 1 30 ? C7 NAG 720 A 1 HETATM 8 C C8 NAG . . . U 9 161.27 124.445 116.016 1 30 ? C8 NAG 720 A 1 HETATM 9 N N2 NAG . . . U 9 159.437 123.6 117.341 1 30 ? N2 NAG 720 A 1 HETATM 10 O O3 NAG . . . U 9 158.985 123.379 120.174 1 30 ? O3 NAG 720 A 1 HETATM 11 O O4 NAG . . . U 9 156.667 121.533 120.761 1 30 ? O4 NAG 720 A 1 HETATM 12 O O5 NAG . . . U 9 155.8 123.001 117.581 1 30 ? O5 NAG 720 A 1 HETATM 13 O O6 NAG . . . U 9 153.849 123.089 119.503 1 30 ? O6 NAG 720 A 1 HETATM 14 O O7 NAG . . . U 9 159.406 125.754 116.706 1 30 ? O7 NAG 720 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #